Wall clock time and date at job start Tue Mar 31 2020 19:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 N 1.46506 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00032 * 263.30306 * 4 3 2 6 6 O 1.21691 * 119.99813 * 174.21423 * 5 4 3 7 7 C 1.46772 * 120.00213 * 354.21789 * 5 4 3 8 8 C 1.41490 * 126.51622 * 26.93928 * 7 5 4 9 9 N 1.30287 * 108.18766 * 179.81737 * 8 7 5 10 10 N 1.39900 * 109.23126 * 0.44920 * 9 8 7 11 11 C 1.46494 * 125.74720 * 179.72965 * 10 9 8 12 12 C 1.34840 * 108.50487 * 359.71324 * 10 9 8 13 13 N 1.38014 * 126.44673 * 179.97438 * 12 10 9 14 14 C 1.46507 * 119.99864 * 83.31096 * 4 3 2 15 15 C 1.53033 * 109.45640 * 239.99680 * 14 4 3 16 16 C 1.53193 * 109.31090 * 178.61342 * 15 14 4 17 17 N 1.46925 * 108.89381 * 54.56505 * 16 15 14 18 18 C 1.36938 * 120.62952 * 126.46344 * 17 16 15 19 19 H 1.08001 * 119.99752 * 323.00668 * 18 17 16 20 20 C 1.38808 * 119.99950 * 143.01240 * 18 17 16 21 21 N 1.31622 * 120.00125 * 359.29125 * 20 18 17 22 22 Si 1.86804 * 120.00061 * 179.29025 * 20 18 17 23 23 H 1.48501 * 109.46886 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46793 * 119.99968 * 22 20 18 25 25 H 1.48497 * 109.47243 * 240.00031 * 22 20 18 26 26 C 1.46958 * 118.71357 * 306.63827 * 17 16 15 27 27 C 1.53040 * 109.46161 * 119.92855 * 14 4 3 28 28 H 1.08997 * 109.47080 * 299.99913 * 1 2 3 29 29 H 1.08995 * 109.47447 * 59.99878 * 1 2 3 30 30 H 1.09005 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47080 * 240.00087 * 2 1 3 32 32 H 1.08995 * 109.47447 * 120.00122 * 2 1 3 33 33 H 1.08997 * 109.47139 * 60.00123 * 3 2 1 34 34 H 1.09002 * 109.47435 * 300.00100 * 3 2 1 35 35 H 1.07996 * 125.90609 * 359.97438 * 8 7 5 36 36 H 1.09006 * 109.47272 * 269.97887 * 11 10 9 37 37 H 1.09005 * 109.46980 * 29.97763 * 11 10 9 38 38 H 1.09000 * 109.47598 * 149.97723 * 11 10 9 39 39 H 0.96998 * 120.00191 * 180.02562 * 13 12 10 40 40 H 0.97003 * 120.00008 * 359.97438 * 13 12 10 41 41 H 1.09002 * 109.44566 * 359.96019 * 14 4 3 42 42 H 1.09006 * 109.49986 * 58.66422 * 15 14 4 43 43 H 1.09000 * 109.49911 * 298.56841 * 15 14 4 44 44 H 1.09010 * 109.58942 * 174.42370 * 16 15 14 45 45 H 1.09000 * 109.58754 * 294.69953 * 16 15 14 46 46 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.47005 * 293.57699 * 26 17 16 48 48 H 1.09003 * 109.71162 * 173.28426 * 26 17 16 49 49 H 1.08997 * 109.49755 * 301.33739 * 27 14 4 50 50 H 1.08996 * 109.49273 * 61.43150 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.5784 1.1583 6 8 5.3916 1.4732 1.1728 7 6 3.4517 1.8533 2.4030 8 6 2.1134 1.4965 2.6922 9 7 1.8333 1.9100 3.8955 10 7 2.9527 2.5537 4.4338 11 6 3.0330 3.1612 5.7645 12 6 3.9453 2.5204 3.5218 13 7 5.2119 3.0484 3.6689 14 6 4.2370 1.2949 -1.2611 15 6 5.1167 0.0444 -1.1963 16 6 5.8540 -0.1260 -2.5282 17 7 6.5863 1.1119 -2.8284 18 6 7.9273 1.0799 -3.1038 19 1 8.5705 0.3908 -2.5768 20 6 8.4599 1.9333 -4.0603 21 7 7.6739 2.7635 -4.7124 22 14 10.2924 1.9036 -4.4220 23 1 10.9506 0.8893 -3.5598 24 1 10.5095 1.5567 -5.8494 25 1 10.8737 3.2414 -4.1436 26 6 5.8526 2.3852 -2.8234 27 6 5.1153 2.5274 -1.4880 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.4413 0.9699 2.0309 36 1 2.7262 4.2055 5.7062 37 1 2.3739 2.6264 6.4484 38 1 4.0587 3.1036 6.1289 39 1 5.8563 2.9712 2.9480 40 1 5.4575 3.4975 4.4929 41 1 3.5279 1.1978 -2.0833 42 1 4.4929 -0.8302 -1.0113 43 1 5.8422 0.1514 -0.3899 44 1 6.5558 -0.9568 -2.4539 45 1 5.1338 -0.3261 -3.3216 46 1 8.0461 3.3601 -5.3806 47 1 5.1320 2.3925 -3.6411 48 1 6.5515 3.2128 -2.9447 49 1 4.4905 3.4202 -1.5107 50 1 5.8408 2.6110 -0.6789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713853708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:27 Heat of formation + Delta-G solvation = 76.797620 kcal Electronic energy + Delta-G solvation = -30756.057341 eV Core-core repulsion = 26821.059647 eV Total energy + Delta-G solvation = -3934.997694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51764 -39.51932 -36.75214 -36.18314 -34.80831 -33.53764 -32.93596 -31.89738 -30.02795 -29.52258 -28.51409 -27.24623 -26.13497 -24.83537 -22.75895 -22.05217 -21.93388 -21.47069 -20.79739 -19.44020 -18.77233 -17.65544 -17.00902 -16.49421 -16.13311 -15.89961 -15.62172 -15.02498 -14.74908 -14.49523 -14.25539 -13.74252 -13.50277 -13.44627 -13.29446 -13.14136 -13.02446 -12.88171 -12.75817 -12.42589 -12.29678 -12.02408 -11.73357 -11.42722 -11.32001 -11.23112 -11.04013 -10.84649 -10.79448 -10.71199 -10.67154 -10.14683 -9.98990 -9.93798 -9.61355 -9.41816 -9.09483 -8.97253 -8.39106 -8.13295 -7.81168 -6.38620 -5.68614 -3.20762 1.83397 2.09946 2.27365 3.38668 3.43364 3.49903 3.52981 3.54061 3.68018 4.27389 4.57463 4.75816 4.81515 4.88416 4.94431 5.03852 5.07754 5.23927 5.29991 5.39619 5.41582 5.51543 5.60390 5.61985 5.69054 5.80570 5.87818 5.94013 6.01263 6.03525 6.17755 6.28693 6.34205 6.45005 6.52331 6.57990 6.73124 6.78436 6.91868 6.98866 7.15116 7.22071 7.28413 7.34816 7.56152 7.71358 7.83351 7.91219 7.98197 8.64547 8.75418 9.36402 9.95588 10.57482 11.39360 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003354 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.385428 B = 8346.224900 C = 9699.320759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.151 4.151 3 C 0.090 3.910 4 N -0.605 5.605 5 C 0.600 3.400 6 O -0.544 6.544 7 C -0.363 4.363 8 C 0.094 3.906 9 N -0.312 5.312 10 N -0.403 5.403 11 C 0.103 3.897 12 C 0.428 3.572 13 N -0.832 5.832 14 C 0.164 3.836 15 C -0.147 4.147 16 C 0.151 3.849 17 N -0.590 5.590 18 C -0.247 4.247 19 H 0.061 0.939 20 C 0.007 3.993 21 N -0.906 5.906 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.178 3.822 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.200 0.800 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.431 0.569 40 H 0.398 0.602 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.014 0.986 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 0.459 18.279 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C -0.034 4.034 4 N -0.336 5.336 5 C 0.390 3.610 6 O -0.423 6.423 7 C -0.383 4.383 8 C -0.094 4.094 9 N -0.131 5.131 10 N -0.192 5.192 11 C -0.039 4.039 12 C 0.194 3.806 13 N -0.381 5.381 14 C 0.062 3.938 15 C -0.187 4.187 16 C 0.024 3.976 17 N -0.313 5.313 18 C -0.377 4.377 19 H 0.079 0.921 20 C -0.191 4.191 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.052 3.948 27 C -0.192 4.192 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.216 0.784 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.267 0.733 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.106 0.894 49 H 0.060 0.940 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.939 0.624 19.155 24.300 hybrid contribution 1.703 0.207 -0.743 1.870 sum -13.235 0.830 18.412 22.690 Atomic orbital electron populations 1.21754 0.95255 1.02022 1.01985 1.22071 0.95850 0.97699 1.03296 1.22110 0.80858 0.96632 1.03766 1.47983 1.05724 1.72805 1.07069 1.16964 0.86275 0.75903 0.81875 1.90735 1.13726 1.51723 1.86133 1.19426 0.97320 1.23728 0.97827 1.24414 0.94569 0.97206 0.93224 1.77106 1.05997 1.18289 1.11732 1.48127 1.08787 1.48750 1.13537 1.21771 1.03457 0.98472 0.80172 1.17994 0.83020 0.91009 0.88602 1.41689 1.10401 1.63530 1.22462 1.21035 0.92932 0.96897 0.82887 1.22475 0.99362 0.95083 1.01748 1.20872 0.94086 0.90438 0.92233 1.43931 1.05725 1.00126 1.81525 1.19183 0.83562 1.20491 1.14483 0.92127 1.25328 0.97880 0.99704 0.96203 1.69944 1.33596 1.24681 1.26805 0.86219 0.85408 0.77399 0.77793 1.20221 1.21632 1.21734 1.20742 0.94004 0.90489 0.89582 1.22625 0.98880 0.94772 1.02970 0.92628 0.92335 0.92397 0.90913 0.91479 0.88970 0.90812 0.78367 0.90880 0.88862 0.90215 0.73309 0.77316 0.90886 0.93842 0.89590 0.92890 0.96901 0.93771 0.96803 0.89400 0.93999 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.82 37.16 0.36 -0.80 16 2 C -0.15 -1.51 5.31 -26.73 -0.14 -1.65 16 3 C 0.09 1.04 4.84 -4.04 -0.02 1.02 16 4 N -0.60 -9.34 2.43 -167.55 -0.41 -9.74 16 5 C 0.60 10.06 6.99 -12.81 -0.09 9.97 16 6 O -0.54 -10.82 11.93 5.20 0.06 -10.76 16 7 C -0.36 -5.19 5.74 -104.82 -0.60 -5.79 16 8 C 0.09 1.16 9.47 -16.97 -0.16 1.00 16 9 N -0.31 -3.91 12.47 30.88 0.38 -3.52 16 10 N -0.40 -4.41 4.00 -66.82 -0.27 -4.68 16 11 C 0.10 0.62 11.25 59.84 0.67 1.30 16 12 C 0.43 5.34 7.97 -153.78 -1.23 4.11 16 13 N -0.83 -8.45 9.02 31.40 0.28 -8.17 16 14 C 0.16 2.99 2.50 -67.89 -0.17 2.82 16 15 C -0.15 -2.89 5.26 -26.61 -0.14 -3.03 16 16 C 0.15 3.38 6.51 -3.71 -0.02 3.36 16 17 N -0.59 -15.56 2.98 -172.29 -0.51 -16.08 16 18 C -0.25 -7.09 9.53 -15.06 -0.14 -7.23 16 19 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 20 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 21 N -0.91 -26.83 10.97 55.49 0.61 -26.22 16 22 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.18 4.45 5.21 -3.69 -0.02 4.43 16 27 C -0.15 -3.20 5.27 -26.61 -0.14 -3.34 16 28 H 0.05 0.38 7.56 -51.93 -0.39 -0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.70 7.26 -51.93 -0.38 0.33 16 33 H 0.09 0.99 4.10 -51.93 -0.21 0.78 16 34 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.20 2.02 3.39 -52.49 -0.18 1.85 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.31 7.46 -51.93 -0.39 -0.08 16 39 H 0.43 5.19 7.51 -40.82 -0.31 4.89 16 40 H 0.40 2.57 8.04 -40.82 -0.33 2.25 16 41 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.93 6.02 -51.93 -0.31 1.61 16 44 H 0.05 1.18 7.93 -51.92 -0.41 0.77 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 2.46 6.25 -51.93 -0.32 2.14 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 1.72 6.41 -51.93 -0.33 1.38 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -34.67 382.86 -8.78 -43.45 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.74 Total: 6.36 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.93 Total: 6.29 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: 0.09 Total: -68.40 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.06 Total: -10.76 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.67 -8.78 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713853708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.246 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds