Wall clock time and date at job start Tue Mar 31 2020 19:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 N 1.46506 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00032 * 263.30306 * 4 3 2 6 6 O 1.21691 * 119.99813 * 174.21423 * 5 4 3 7 7 C 1.46772 * 120.00213 * 354.21789 * 5 4 3 8 8 C 1.41490 * 126.51622 * 26.93928 * 7 5 4 9 9 N 1.30287 * 108.18766 * 179.81737 * 8 7 5 10 10 N 1.39900 * 109.23126 * 0.44920 * 9 8 7 11 11 C 1.46494 * 125.74720 * 179.72965 * 10 9 8 12 12 C 1.34840 * 108.50487 * 359.71324 * 10 9 8 13 13 N 1.38014 * 126.44673 * 179.97438 * 12 10 9 14 14 C 1.46507 * 119.99864 * 83.31096 * 4 3 2 15 15 C 1.53033 * 109.45640 * 239.99680 * 14 4 3 16 16 C 1.53193 * 109.31090 * 178.61342 * 15 14 4 17 17 N 1.46925 * 108.89381 * 54.56505 * 16 15 14 18 18 C 1.36938 * 120.62952 * 126.46344 * 17 16 15 19 19 H 1.08001 * 119.99752 * 323.00668 * 18 17 16 20 20 C 1.38808 * 119.99950 * 143.01240 * 18 17 16 21 21 N 1.31622 * 120.00125 * 359.29125 * 20 18 17 22 22 Si 1.86804 * 120.00061 * 179.29025 * 20 18 17 23 23 H 1.48501 * 109.46886 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46793 * 119.99968 * 22 20 18 25 25 H 1.48497 * 109.47243 * 240.00031 * 22 20 18 26 26 C 1.46958 * 118.71357 * 306.63827 * 17 16 15 27 27 C 1.53040 * 109.46161 * 119.92855 * 14 4 3 28 28 H 1.08997 * 109.47080 * 299.99913 * 1 2 3 29 29 H 1.08995 * 109.47447 * 59.99878 * 1 2 3 30 30 H 1.09005 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47080 * 240.00087 * 2 1 3 32 32 H 1.08995 * 109.47447 * 120.00122 * 2 1 3 33 33 H 1.08997 * 109.47139 * 60.00123 * 3 2 1 34 34 H 1.09002 * 109.47435 * 300.00100 * 3 2 1 35 35 H 1.07996 * 125.90609 * 359.97438 * 8 7 5 36 36 H 1.09006 * 109.47272 * 269.97887 * 11 10 9 37 37 H 1.09005 * 109.46980 * 29.97763 * 11 10 9 38 38 H 1.09000 * 109.47598 * 149.97723 * 11 10 9 39 39 H 0.96998 * 120.00191 * 180.02562 * 13 12 10 40 40 H 0.97003 * 120.00008 * 359.97438 * 13 12 10 41 41 H 1.09002 * 109.44566 * 359.96019 * 14 4 3 42 42 H 1.09006 * 109.49986 * 58.66422 * 15 14 4 43 43 H 1.09000 * 109.49911 * 298.56841 * 15 14 4 44 44 H 1.09010 * 109.58942 * 174.42370 * 16 15 14 45 45 H 1.09000 * 109.58754 * 294.69953 * 16 15 14 46 46 H 0.97003 * 119.99978 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.47005 * 293.57699 * 26 17 16 48 48 H 1.09003 * 109.71162 * 173.28426 * 26 17 16 49 49 H 1.08997 * 109.49755 * 301.33739 * 27 14 4 50 50 H 1.08996 * 109.49273 * 61.43150 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.5784 1.1583 6 8 5.3916 1.4732 1.1728 7 6 3.4517 1.8533 2.4030 8 6 2.1134 1.4965 2.6922 9 7 1.8333 1.9100 3.8955 10 7 2.9527 2.5537 4.4338 11 6 3.0330 3.1612 5.7645 12 6 3.9453 2.5204 3.5218 13 7 5.2119 3.0484 3.6689 14 6 4.2370 1.2949 -1.2611 15 6 5.1167 0.0444 -1.1963 16 6 5.8540 -0.1260 -2.5282 17 7 6.5863 1.1119 -2.8284 18 6 7.9273 1.0799 -3.1038 19 1 8.5705 0.3908 -2.5768 20 6 8.4599 1.9333 -4.0603 21 7 7.6739 2.7635 -4.7124 22 14 10.2924 1.9036 -4.4220 23 1 10.9506 0.8893 -3.5598 24 1 10.5095 1.5567 -5.8494 25 1 10.8737 3.2414 -4.1436 26 6 5.8526 2.3852 -2.8234 27 6 5.1153 2.5274 -1.4880 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.4413 0.9699 2.0309 36 1 2.7262 4.2055 5.7062 37 1 2.3739 2.6264 6.4484 38 1 4.0587 3.1036 6.1289 39 1 5.8563 2.9712 2.9480 40 1 5.4575 3.4975 4.4929 41 1 3.5279 1.1978 -2.0833 42 1 4.4929 -0.8302 -1.0113 43 1 5.8422 0.1514 -0.3899 44 1 6.5558 -0.9568 -2.4539 45 1 5.1338 -0.3261 -3.3216 46 1 8.0461 3.3601 -5.3806 47 1 5.1320 2.3925 -3.6411 48 1 6.5515 3.2128 -2.9447 49 1 4.4905 3.4202 -1.5107 50 1 5.8408 2.6110 -0.6789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713853708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:26 Heat of formation + Delta-G solvation = 54.248767 kcal Electronic energy + Delta-G solvation = -30757.035132 eV Core-core repulsion = 26821.059647 eV Total energy + Delta-G solvation = -3935.975485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46502 -40.81042 -38.45190 -37.32058 -35.73333 -35.02186 -33.82906 -33.41081 -31.73196 -31.31469 -29.58179 -28.09437 -27.19704 -26.52108 -24.25486 -23.77611 -23.03236 -22.43180 -21.92018 -20.93925 -20.06045 -18.81763 -18.49203 -17.75180 -17.25789 -16.92773 -16.77876 -16.52634 -16.02937 -15.72198 -15.47473 -15.27671 -15.19201 -14.78240 -14.58678 -14.31389 -14.07809 -13.97273 -13.82052 -13.64950 -13.46129 -13.24850 -12.94500 -12.84856 -12.72550 -12.60292 -12.50455 -12.25904 -12.18498 -12.08269 -11.93369 -11.80821 -11.77034 -11.54847 -11.34632 -11.16796 -10.56503 -10.37489 -9.90367 -9.45404 -8.80186 -8.50180 -7.85751 -5.42214 0.88500 1.26705 1.31646 1.45499 1.45874 1.57599 2.18619 2.50586 2.51786 2.76753 3.30334 3.53495 3.74301 3.88278 4.02585 4.07761 4.09349 4.25403 4.30041 4.39450 4.41690 4.43226 4.51142 4.57583 4.60495 4.66110 4.66518 4.75553 4.77239 4.90787 4.94107 5.03116 5.05739 5.17240 5.23851 5.28254 5.33000 5.37592 5.51827 5.56417 5.56753 5.61487 5.67146 5.77790 5.91829 6.22104 6.47436 6.51625 6.69335 6.89370 7.19976 7.50024 7.87222 8.43140 9.19714 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003354 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.385428 B = 8346.224900 C = 9699.320759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.087 3.913 4 N -0.602 5.602 5 C 0.594 3.406 6 O -0.585 6.585 7 C -0.393 4.393 8 C 0.100 3.900 9 N -0.323 5.323 10 N -0.399 5.399 11 C 0.091 3.909 12 C 0.424 3.576 13 N -0.822 5.822 14 C 0.174 3.826 15 C -0.131 4.131 16 C 0.149 3.851 17 N -0.610 5.610 18 C -0.266 4.266 19 H 0.054 0.946 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.289 1.289 26 C 0.188 3.812 27 C -0.136 4.136 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.216 0.784 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.424 0.576 40 H 0.415 0.585 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.022 0.978 46 H 0.251 0.749 47 H 0.003 0.997 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.330 0.317 19.860 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C -0.035 4.035 4 N -0.332 5.332 5 C 0.386 3.614 6 O -0.467 6.467 7 C -0.412 4.412 8 C -0.089 4.089 9 N -0.142 5.142 10 N -0.188 5.188 11 C -0.049 4.049 12 C 0.188 3.812 13 N -0.371 5.371 14 C 0.071 3.929 15 C -0.171 4.171 16 C 0.023 3.977 17 N -0.333 5.333 18 C -0.396 4.396 19 H 0.072 0.928 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.215 1.215 26 C 0.062 3.938 27 C -0.176 4.176 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.257 0.743 40 H 0.247 0.753 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.602 0.484 20.798 26.616 hybrid contribution 2.190 0.277 -1.141 2.484 sum -14.412 0.761 19.657 24.386 Atomic orbital electron populations 1.21726 0.93160 1.02785 1.02865 1.21998 0.97551 0.96182 1.02567 1.22373 0.78228 0.98091 1.04848 1.47908 1.07260 1.72447 1.05626 1.17369 0.85951 0.75187 0.82848 1.90715 1.15544 1.53591 1.86825 1.19359 0.98381 1.25899 0.97579 1.24597 0.93934 0.96966 0.93392 1.77049 1.06887 1.18519 1.11756 1.48426 1.07743 1.48153 1.14479 1.22196 1.05405 0.99178 0.78121 1.18102 0.83796 0.90640 0.88672 1.41659 1.09482 1.63000 1.22966 1.20726 0.92807 0.94516 0.84867 1.22247 0.99015 0.96966 0.98849 1.20979 0.94079 0.88799 0.93854 1.44172 1.05528 1.01685 1.81955 1.19415 0.84932 1.20557 1.14702 0.92815 1.26056 1.02253 0.99398 0.96116 1.70105 1.35302 1.25143 1.27172 0.85187 0.80235 0.77382 0.77546 1.19430 1.21240 1.21531 1.20486 0.92984 0.89033 0.91306 1.22345 0.98654 0.97076 0.99506 0.91426 0.91810 0.91726 0.91937 0.91950 0.87836 0.89770 0.76757 0.89308 0.87854 0.87907 0.74269 0.75279 0.89378 0.91334 0.92348 0.93374 0.96017 0.93979 0.97943 0.93094 0.92521 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.82 71.98 0.71 -1.13 16 2 C -0.14 -2.56 5.31 30.59 0.16 -2.40 16 3 C 0.09 1.83 4.84 86.38 0.42 2.24 16 4 N -0.60 -18.06 2.43 -802.23 -1.95 -20.01 16 5 C 0.59 19.84 6.99 86.47 0.60 20.44 16 6 O -0.58 -23.83 11.93 -4.32 -0.05 -23.88 16 7 C -0.39 -10.84 5.74 -19.99 -0.11 -10.95 16 8 C 0.10 2.28 9.47 85.72 0.81 3.09 16 9 N -0.32 -7.40 12.47 -56.22 -0.70 -8.10 16 10 N -0.40 -7.88 4.00 -365.31 -1.46 -9.34 16 11 C 0.09 0.85 11.25 127.77 1.44 2.28 16 12 C 0.42 10.04 7.97 132.69 1.06 11.10 16 13 N -0.82 -15.94 9.02 -54.58 -0.49 -16.44 16 14 C 0.17 6.24 2.50 45.01 0.11 6.36 16 15 C -0.13 -5.15 5.26 30.67 0.16 -4.99 16 16 C 0.15 6.75 6.51 86.36 0.56 7.32 16 17 N -0.61 -33.06 2.98 -699.00 -2.09 -35.14 16 18 C -0.27 -15.66 9.53 84.03 0.80 -14.85 16 19 H 0.05 3.17 7.83 -2.91 -0.02 3.15 16 20 C -0.04 -2.48 5.23 84.86 0.44 -2.03 16 21 N -0.93 -56.60 10.97 21.65 0.24 -56.37 16 22 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 C 0.19 9.72 5.21 86.36 0.45 10.17 16 27 C -0.14 -5.80 5.27 30.67 0.16 -5.64 16 28 H 0.07 0.69 7.56 -2.39 -0.02 0.67 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.18 7.26 -2.39 -0.02 1.16 16 33 H 0.10 1.99 4.10 -2.39 -0.01 1.98 16 34 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 35 H 0.22 3.88 3.39 -2.91 -0.01 3.87 16 36 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.48 7.46 -2.39 -0.02 0.46 16 39 H 0.42 10.25 7.51 -92.71 -0.70 9.56 16 40 H 0.42 4.68 8.04 -92.71 -0.75 3.94 16 41 H 0.09 2.93 7.88 -2.39 -0.02 2.92 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.06 2.67 6.02 -2.39 -0.01 2.66 16 44 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.05 2.99 6.25 -2.39 -0.01 2.97 16 49 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.05 2.37 6.41 -2.39 -0.02 2.35 16 Total: -1.00 -77.21 382.86 2.84 -74.37 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.46 Total: 25.18 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 7.78 Total: 21.00 kcal Atomic # 7 Polarization: -138.95 SS G_CDS: -6.45 Total: -145.39 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.21 2.84 -74.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713853708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.615 kcal (2) G-P(sol) polarization free energy of solvation -77.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds