Wall clock time and date at job start Tue Mar 31 2020 19:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.53002 * 109.46591 * 240.00211 * 2 1 3 5 5 N 1.46493 * 109.47420 * 120.00906 * 2 1 3 6 6 C 1.34808 * 126.59945 * 75.28437 * 5 2 1 7 7 C 1.36600 * 106.84160 * 180.13347 * 6 5 2 8 8 C 1.47521 * 125.77124 * 179.90182 * 7 6 5 9 9 O 1.21595 * 120.00124 * 359.71789 * 8 7 6 10 10 N 1.34773 * 120.00091 * 179.72047 * 8 7 6 11 11 C 1.46502 * 120.00060 * 185.12811 * 10 8 7 12 12 C 1.52996 * 109.47170 * 298.25416 * 11 10 8 13 13 C 1.53002 * 109.47046 * 58.25763 * 11 10 8 14 14 N 1.46506 * 109.47159 * 59.99916 * 13 11 10 15 15 C 1.36938 * 119.99630 * 179.72994 * 14 13 11 16 16 H 1.08005 * 120.00014 * 0.27047 * 15 14 13 17 17 C 1.38811 * 119.99904 * 180.27543 * 15 14 13 18 18 N 1.31616 * 120.00288 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47214 * 89.99909 * 19 17 15 21 21 H 1.48497 * 109.47337 * 210.00053 * 19 17 15 22 22 H 1.48507 * 109.47127 * 330.00393 * 19 17 15 23 23 C 1.53006 * 109.47184 * 178.25504 * 11 10 8 24 24 C 1.52993 * 117.49974 * 132.05584 * 23 11 10 25 25 C 1.53001 * 117.49758 * 63.39083 * 23 11 10 26 26 N 1.34403 * 108.45831 * 359.64070 * 7 6 5 27 27 N 1.28764 * 109.51994 * 0.22235 * 26 7 6 28 28 H 1.09001 * 109.46551 * 299.99547 * 1 2 3 29 29 H 1.08994 * 109.47216 * 59.99596 * 1 2 3 30 30 H 1.08999 * 109.46753 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46587 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47417 * 300.00280 * 3 2 1 33 33 H 1.09005 * 109.46677 * 60.00454 * 3 2 1 34 34 H 1.08997 * 109.47897 * 299.99975 * 4 2 1 35 35 H 1.09004 * 109.47264 * 60.00105 * 4 2 1 36 36 H 1.09005 * 109.46916 * 179.97438 * 4 2 1 37 37 H 1.07996 * 126.58255 * 359.97438 * 6 5 2 38 38 H 0.97006 * 120.00062 * 5.12826 * 10 8 7 39 39 H 1.09007 * 109.46915 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47412 * 300.00046 * 12 11 10 41 41 H 1.08998 * 109.47299 * 60.00081 * 12 11 10 42 42 H 1.08998 * 109.46855 * 299.99571 * 13 11 10 43 43 H 1.08999 * 109.46967 * 179.97438 * 13 11 10 44 44 H 0.96999 * 119.99710 * 359.97438 * 14 13 11 45 45 H 0.96998 * 120.00241 * 180.02562 * 18 17 15 46 46 H 1.09001 * 115.54825 * 277.72806 * 23 11 10 47 47 H 1.09003 * 117.50039 * 359.97438 * 24 23 11 48 48 H 1.08994 * 117.50152 * 145.02619 * 24 23 11 49 49 H 1.09000 * 117.49805 * 214.98050 * 25 23 11 50 50 H 1.08999 * 117.49762 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0185 -0.6908 1.1960 6 6 2.0272 -2.0220 1.4080 7 6 2.5636 -2.2217 2.6483 8 6 2.7662 -3.5297 3.2998 9 8 2.4395 -4.5513 2.7271 10 7 3.3134 -3.5922 4.5299 11 6 3.6182 -4.8932 5.1307 12 6 2.3251 -5.6939 5.2966 13 6 4.5809 -5.6612 4.2228 14 7 5.8191 -4.8944 4.0639 15 6 6.8369 -5.3896 3.2932 16 1 6.7251 -6.3433 2.7989 17 6 8.0123 -4.6657 3.1473 18 7 8.9908 -5.1418 2.4069 19 14 8.2054 -3.0159 4.0018 20 1 8.7922 -3.2224 5.3503 21 1 9.1018 -2.1449 3.2000 22 1 6.8754 -2.3686 4.1348 23 6 4.2672 -4.6829 6.5003 24 6 3.7214 -5.4994 7.6734 25 6 3.4283 -3.9997 7.5821 26 7 2.8809 -1.0254 3.1724 27 7 2.5714 -0.0946 2.3383 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2495 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 1.6751 -2.7843 0.7288 38 1 3.5053 -2.7759 5.0175 39 1 2.5521 -6.6620 5.7432 40 1 1.6393 -5.1467 5.9435 41 1 1.8628 -5.8437 4.3210 42 1 4.1185 -5.8110 3.2471 43 1 4.8080 -6.6289 4.6700 44 1 5.9192 -4.0377 4.5076 45 1 9.8123 -4.6362 2.3053 46 1 5.3370 -4.4746 6.4866 47 1 2.8997 -6.1860 7.4697 48 1 4.4320 -5.8279 8.4318 49 1 3.9463 -3.3423 8.2804 50 1 2.4140 -3.7004 7.3183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714165874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:41 Heat of formation + Delta-G solvation = 103.075433 kcal Electronic energy + Delta-G solvation = -30369.222810 eV Core-core repulsion = 26435.364608 eV Total energy + Delta-G solvation = -3933.858202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24806 -39.97913 -37.88855 -37.42609 -34.75418 -33.49502 -32.10140 -31.52773 -30.71973 -29.61643 -27.96677 -27.87997 -26.08286 -24.32181 -23.67331 -22.84585 -22.20400 -21.77706 -20.75640 -19.72798 -18.83230 -17.73943 -17.57430 -16.63358 -16.10958 -15.65949 -15.23617 -14.81537 -14.70116 -14.63645 -14.54099 -14.24944 -14.00726 -13.77789 -13.07579 -13.01299 -12.87617 -12.74076 -12.70615 -12.33169 -12.31292 -12.24276 -12.18125 -11.98285 -11.83092 -11.66387 -11.50651 -11.17077 -11.08966 -10.91738 -10.81781 -10.72026 -10.36154 -10.22944 -10.13395 -9.85678 -9.53307 -9.48625 -9.21262 -8.75688 -8.60414 -7.07697 -5.66921 -2.99903 1.18434 1.87663 1.90540 3.27271 3.43333 3.49094 3.51260 3.63046 3.90797 4.07343 4.19090 4.26926 4.30972 4.68180 4.70342 4.77944 4.89224 4.96931 5.02760 5.05052 5.12751 5.14516 5.16158 5.19748 5.29347 5.30134 5.36904 5.37635 5.50950 5.64073 5.65376 5.66761 5.74054 5.77632 5.89978 5.96552 6.01972 6.03935 6.17867 6.23590 6.38491 6.40326 6.54037 6.62554 6.87471 7.07419 7.80065 8.07072 8.11504 8.51782 8.54625 9.32800 10.05390 10.26459 11.52007 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.004194 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.448649 B = 6675.174768 C = 8248.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.170 3.830 3 C -0.149 4.149 4 C -0.165 4.165 5 N -0.353 5.353 6 C 0.092 3.908 7 C -0.094 4.094 8 C 0.613 3.387 9 O -0.532 6.532 10 N -0.699 5.699 11 C 0.199 3.801 12 C -0.163 4.163 13 C 0.149 3.851 14 N -0.751 5.751 15 C -0.233 4.233 16 H 0.089 0.911 17 C 0.003 3.997 18 N -0.938 5.938 19 Si 0.877 3.123 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.275 1.275 23 C -0.155 4.155 24 C -0.169 4.169 25 C -0.182 4.182 26 N -0.207 5.207 27 N -0.068 5.068 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.200 0.800 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.034 0.966 44 H 0.359 0.641 45 H 0.257 0.743 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.178 10.274 -0.935 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.223 4.223 5 N -0.140 5.140 6 C -0.064 4.064 7 C -0.233 4.233 8 C 0.397 3.603 9 O -0.409 6.409 10 N -0.349 5.349 11 C 0.113 3.887 12 C -0.221 4.221 13 C 0.021 3.979 14 N -0.396 5.396 15 C -0.363 4.363 16 H 0.107 0.893 17 C -0.192 4.192 18 N -0.586 5.586 19 Si 0.708 3.292 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.201 1.201 23 C -0.174 4.174 24 C -0.206 4.206 25 C -0.219 4.219 26 N -0.080 5.080 27 N -0.047 5.047 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.217 0.783 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.192 0.808 45 H 0.067 0.933 46 H 0.134 0.866 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.889 10.722 -0.858 23.496 hybrid contribution 0.316 0.809 0.158 0.883 sum -20.573 11.531 -0.700 23.594 Atomic orbital electron populations 1.22276 0.91994 1.03634 1.03873 1.21062 0.95039 0.94121 0.81033 1.21993 1.02763 0.92267 1.03630 1.22319 1.03062 1.01294 0.95623 1.50768 1.42457 1.05236 1.15508 1.23210 0.98549 0.86835 0.97854 1.21576 1.12037 0.93915 0.95801 1.16596 0.77169 0.85608 0.80955 1.90733 1.51651 1.34078 1.64396 1.45746 1.62691 1.09508 1.16959 1.20130 0.94739 0.82886 0.90905 1.22290 0.96576 0.99676 1.03543 1.21042 0.85924 0.93428 0.97512 1.42629 1.14575 1.22090 1.60340 1.19072 0.92024 1.03886 1.21290 0.89281 1.24611 0.96426 0.98088 1.00117 1.69698 1.06181 1.39034 1.43732 0.86635 0.77469 0.85631 0.79477 1.21153 1.21933 1.20130 1.22539 1.00018 1.05748 0.89077 1.23071 1.03483 0.94042 0.99989 1.22973 1.01077 0.95624 1.02253 1.74629 1.12480 0.98140 1.22759 1.81912 1.15790 1.17116 0.89891 0.91316 0.89733 0.91364 0.91112 0.90227 0.90698 0.91033 0.89483 0.90892 0.78320 0.76159 0.91407 0.92857 0.90032 0.92939 0.94772 0.80756 0.93279 0.86563 0.88021 0.88771 0.88885 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.74 37.16 0.32 -0.60 16 2 C 0.17 1.34 1.25 -131.82 -0.16 1.17 16 3 C -0.15 -1.09 8.11 37.16 0.30 -0.79 16 4 C -0.16 -1.09 8.30 37.16 0.31 -0.78 16 5 N -0.35 -4.21 3.44 -48.36 -0.17 -4.38 16 6 C 0.09 1.20 10.43 -16.84 -0.18 1.03 16 7 C -0.09 -1.52 6.99 -83.55 -0.58 -2.11 16 8 C 0.61 10.88 7.22 -12.48 -0.09 10.79 16 9 O -0.53 -10.28 13.10 5.28 0.07 -10.21 16 10 N -0.70 -11.73 4.72 -48.64 -0.23 -11.96 16 11 C 0.20 3.29 0.54 -131.82 -0.07 3.22 16 12 C -0.16 -2.31 7.06 37.16 0.26 -2.05 16 13 C 0.15 3.14 4.94 -4.04 -0.02 3.12 16 14 N -0.75 -18.70 4.83 -59.90 -0.29 -18.99 16 15 C -0.23 -6.89 10.47 -15.06 -0.16 -7.05 16 16 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.94 -30.50 13.97 55.49 0.78 -29.72 16 19 Si 0.88 23.24 27.73 -169.99 -4.71 18.52 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 23 C -0.16 -2.34 4.86 -90.62 -0.44 -2.78 16 24 C -0.17 -2.05 9.63 -26.69 -0.26 -2.31 16 25 C -0.18 -2.18 9.72 -26.69 -0.26 -2.44 16 26 N -0.21 -3.45 12.05 32.85 0.40 -3.05 16 27 N -0.07 -1.01 12.91 60.35 0.78 -0.23 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 34 H 0.07 0.45 7.43 -51.93 -0.39 0.06 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.20 2.06 7.62 -52.49 -0.40 1.66 16 38 H 0.40 6.44 8.08 -40.82 -0.33 6.11 16 39 H 0.07 0.87 6.81 -51.93 -0.35 0.52 16 40 H 0.05 0.67 7.00 -51.93 -0.36 0.30 16 41 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 42 H 0.05 1.22 6.22 -51.93 -0.32 0.90 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.36 8.79 4.49 -40.82 -0.18 8.61 16 45 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 46 H 0.12 2.03 7.09 -51.93 -0.37 1.67 16 47 H 0.10 1.13 5.88 -51.93 -0.31 0.83 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.09 1.06 7.39 -51.93 -0.38 0.68 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -36.01 397.23 -6.47 -42.48 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.95 Total: 13.14 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.12 Total: -1.59 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 1.26 Total: -68.33 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.01 -6.47 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714165874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.556 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds