Wall clock time and date at job start Tue Mar 31 2020 19:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 C 1.53002 * 109.46591 * 240.00211 * 2 1 3 5 5 N 1.46493 * 109.47420 * 120.00906 * 2 1 3 6 6 C 1.34808 * 126.59945 * 75.28437 * 5 2 1 7 7 C 1.36600 * 106.84160 * 180.13347 * 6 5 2 8 8 C 1.47521 * 125.77124 * 179.90182 * 7 6 5 9 9 O 1.21595 * 120.00124 * 359.71789 * 8 7 6 10 10 N 1.34773 * 120.00091 * 179.72047 * 8 7 6 11 11 C 1.46502 * 120.00060 * 185.12811 * 10 8 7 12 12 C 1.52996 * 109.47170 * 298.25416 * 11 10 8 13 13 C 1.53002 * 109.47046 * 58.25763 * 11 10 8 14 14 N 1.46506 * 109.47159 * 59.99916 * 13 11 10 15 15 C 1.36938 * 119.99630 * 179.72994 * 14 13 11 16 16 H 1.08005 * 120.00014 * 0.27047 * 15 14 13 17 17 C 1.38811 * 119.99904 * 180.27543 * 15 14 13 18 18 N 1.31616 * 120.00288 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47214 * 89.99909 * 19 17 15 21 21 H 1.48497 * 109.47337 * 210.00053 * 19 17 15 22 22 H 1.48507 * 109.47127 * 330.00393 * 19 17 15 23 23 C 1.53006 * 109.47184 * 178.25504 * 11 10 8 24 24 C 1.52993 * 117.49974 * 132.05584 * 23 11 10 25 25 C 1.53001 * 117.49758 * 63.39083 * 23 11 10 26 26 N 1.34403 * 108.45831 * 359.64070 * 7 6 5 27 27 N 1.28764 * 109.51994 * 0.22235 * 26 7 6 28 28 H 1.09001 * 109.46551 * 299.99547 * 1 2 3 29 29 H 1.08994 * 109.47216 * 59.99596 * 1 2 3 30 30 H 1.08999 * 109.46753 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46587 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47417 * 300.00280 * 3 2 1 33 33 H 1.09005 * 109.46677 * 60.00454 * 3 2 1 34 34 H 1.08997 * 109.47897 * 299.99975 * 4 2 1 35 35 H 1.09004 * 109.47264 * 60.00105 * 4 2 1 36 36 H 1.09005 * 109.46916 * 179.97438 * 4 2 1 37 37 H 1.07996 * 126.58255 * 359.97438 * 6 5 2 38 38 H 0.97006 * 120.00062 * 5.12826 * 10 8 7 39 39 H 1.09007 * 109.46915 * 179.97438 * 12 11 10 40 40 H 1.09001 * 109.47412 * 300.00046 * 12 11 10 41 41 H 1.08998 * 109.47299 * 60.00081 * 12 11 10 42 42 H 1.08998 * 109.46855 * 299.99571 * 13 11 10 43 43 H 1.08999 * 109.46967 * 179.97438 * 13 11 10 44 44 H 0.96999 * 119.99710 * 359.97438 * 14 13 11 45 45 H 0.96998 * 120.00241 * 180.02562 * 18 17 15 46 46 H 1.09001 * 115.54825 * 277.72806 * 23 11 10 47 47 H 1.09003 * 117.50039 * 359.97438 * 24 23 11 48 48 H 1.08994 * 117.50152 * 145.02619 * 24 23 11 49 49 H 1.09000 * 117.49805 * 214.98050 * 25 23 11 50 50 H 1.08999 * 117.49762 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0185 -0.6908 1.1960 6 6 2.0272 -2.0220 1.4080 7 6 2.5636 -2.2217 2.6483 8 6 2.7662 -3.5297 3.2998 9 8 2.4395 -4.5513 2.7271 10 7 3.3134 -3.5922 4.5299 11 6 3.6182 -4.8932 5.1307 12 6 2.3251 -5.6939 5.2966 13 6 4.5809 -5.6612 4.2228 14 7 5.8191 -4.8944 4.0639 15 6 6.8369 -5.3896 3.2932 16 1 6.7251 -6.3433 2.7989 17 6 8.0123 -4.6657 3.1473 18 7 8.9908 -5.1418 2.4069 19 14 8.2054 -3.0159 4.0018 20 1 8.7922 -3.2224 5.3503 21 1 9.1018 -2.1449 3.2000 22 1 6.8754 -2.3686 4.1348 23 6 4.2672 -4.6829 6.5003 24 6 3.7214 -5.4994 7.6734 25 6 3.4283 -3.9997 7.5821 26 7 2.8809 -1.0254 3.1724 27 7 2.5714 -0.0946 2.3383 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2495 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 1.6751 -2.7843 0.7288 38 1 3.5053 -2.7759 5.0175 39 1 2.5521 -6.6620 5.7432 40 1 1.6393 -5.1467 5.9435 41 1 1.8628 -5.8437 4.3210 42 1 4.1185 -5.8110 3.2471 43 1 4.8080 -6.6289 4.6700 44 1 5.9192 -4.0377 4.5076 45 1 9.8123 -4.6362 2.3053 46 1 5.3370 -4.4746 6.4866 47 1 2.8997 -6.1860 7.4697 48 1 4.4320 -5.8279 8.4318 49 1 3.9463 -3.3423 8.2804 50 1 2.4140 -3.7004 7.3183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714165874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:40 Heat of formation + Delta-G solvation = 77.299375 kcal Electronic energy + Delta-G solvation = -30370.340544 eV Core-core repulsion = 26435.364608 eV Total energy + Delta-G solvation = -3934.975936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.32131 -41.29002 -39.01046 -38.28302 -36.51419 -35.05629 -33.47661 -32.99780 -32.23691 -30.89990 -28.49169 -28.43358 -27.78477 -25.63488 -24.71418 -24.17864 -23.74652 -23.11129 -21.78833 -20.76773 -20.34042 -19.65508 -18.72466 -17.56534 -17.12581 -16.96884 -16.65105 -16.54910 -15.82436 -15.76742 -15.69335 -15.41405 -15.08512 -14.98424 -14.73543 -14.42457 -13.91296 -13.83880 -13.67877 -13.44058 -13.39542 -13.31775 -13.22060 -13.13284 -12.89604 -12.80980 -12.48606 -12.38754 -12.33839 -12.31443 -12.10197 -12.01886 -11.97301 -11.85851 -11.28952 -11.28441 -11.11647 -10.98114 -10.76635 -10.37692 -9.96591 -9.26988 -8.05591 -5.36297 0.14292 0.64022 1.02718 1.29982 1.33202 1.39865 2.03669 2.33847 2.42866 2.98695 3.18363 3.23181 3.26598 3.53966 3.62400 3.68984 3.74055 3.74597 3.87002 3.93869 4.14195 4.18070 4.18526 4.36242 4.48757 4.54049 4.57787 4.61734 4.64921 4.74791 4.76513 4.78438 4.80211 4.87874 4.89354 4.98548 5.04104 5.04331 5.10651 5.16998 5.23122 5.26759 5.33045 5.44265 5.53483 5.61687 5.73628 6.18317 6.51179 6.90944 7.05443 7.21532 7.82044 8.03175 9.16551 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.004194 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.448649 B = 6675.174768 C = 8248.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 C -0.148 4.148 4 C -0.164 4.164 5 N -0.338 5.338 6 C 0.102 3.898 7 C -0.123 4.123 8 C 0.607 3.393 9 O -0.556 6.556 10 N -0.697 5.697 11 C 0.207 3.793 12 C -0.154 4.154 13 C 0.148 3.852 14 N -0.747 5.747 15 C -0.226 4.226 16 H 0.054 0.946 17 C -0.059 4.059 18 N -0.983 5.983 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.296 1.296 22 H -0.262 1.262 23 C -0.185 4.185 24 C -0.155 4.155 25 C -0.159 4.159 26 N -0.229 5.229 27 N -0.084 5.084 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.225 0.775 38 H 0.408 0.592 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.033 0.967 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.105 0.895 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 11.951 -0.216 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.077 3.923 3 C -0.205 4.205 4 C -0.222 4.222 5 N -0.125 5.125 6 C -0.056 4.056 7 C -0.263 4.263 8 C 0.392 3.608 9 O -0.434 6.434 10 N -0.347 5.347 11 C 0.121 3.879 12 C -0.212 4.212 13 C 0.021 3.979 14 N -0.393 5.393 15 C -0.357 4.357 16 H 0.072 0.928 17 C -0.250 4.250 18 N -0.634 5.634 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.223 1.223 22 H -0.188 1.188 23 C -0.204 4.204 24 C -0.192 4.192 25 C -0.196 4.196 26 N -0.102 5.102 27 N -0.064 5.064 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.241 0.759 38 H 0.243 0.757 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.198 0.802 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.134 0.866 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.322 12.428 -0.112 26.426 hybrid contribution 1.008 0.241 -0.199 1.055 sum -22.314 12.669 -0.311 25.661 Atomic orbital electron populations 1.22287 0.89807 1.04207 1.04913 1.21619 0.96644 0.94211 0.79849 1.22028 1.01511 0.92135 1.04821 1.22369 1.01750 1.01981 0.96054 1.51164 1.40722 1.04969 1.15606 1.23571 0.97171 0.87741 0.97125 1.21594 1.14118 0.93368 0.97194 1.16883 0.76805 0.85998 0.81106 1.90713 1.52775 1.34974 1.64948 1.45793 1.62232 1.09763 1.16890 1.19999 0.94685 0.82588 0.90586 1.22217 0.95403 1.00329 1.03213 1.21121 0.85317 0.93914 0.97579 1.42555 1.14782 1.22462 1.59457 1.19037 0.93296 1.02570 1.20834 0.92819 1.25359 0.96130 1.02152 1.01395 1.69869 1.06885 1.40878 1.45765 0.85527 0.77799 0.80626 0.78609 1.19649 1.22328 1.18761 1.22327 0.98929 1.09920 0.89215 1.23210 1.03497 0.94565 0.97932 1.23054 1.00869 0.95790 0.99922 1.74586 1.13422 0.98405 1.23791 1.81812 1.16445 1.17229 0.90890 0.92278 0.86663 0.91051 0.93070 0.86896 0.91650 0.90528 0.86325 0.92970 0.75879 0.75685 0.89954 0.90486 0.91836 0.95333 0.94922 0.80239 0.93399 0.89241 0.86619 0.87909 0.87698 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.74 71.98 0.63 -0.72 16 2 C 0.16 2.16 1.25 3.61 0.00 2.17 16 3 C -0.15 -1.90 8.11 71.98 0.58 -1.31 16 4 C -0.16 -1.79 8.30 71.98 0.60 -1.20 16 5 N -0.34 -7.75 3.44 -306.90 -1.06 -8.81 16 6 C 0.10 2.59 10.43 83.85 0.87 3.47 16 7 C -0.12 -3.98 6.99 40.82 0.29 -3.70 16 8 C 0.61 21.68 7.22 86.69 0.63 22.30 16 9 O -0.56 -21.81 13.10 -4.01 -0.05 -21.86 16 10 N -0.70 -23.14 4.72 -426.05 -2.01 -25.15 16 11 C 0.21 6.72 0.54 3.60 0.00 6.72 16 12 C -0.15 -4.13 7.06 71.98 0.51 -3.62 16 13 C 0.15 6.37 4.94 86.38 0.43 6.80 16 14 N -0.75 -37.87 4.83 -343.44 -1.66 -39.53 16 15 C -0.23 -13.83 10.47 84.03 0.88 -12.95 16 16 H 0.05 3.60 8.06 -2.91 -0.02 3.58 16 17 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.98 -65.70 13.97 21.65 0.30 -65.40 16 19 Si 0.95 48.75 27.73 68.60 1.90 50.66 16 20 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 22 H -0.26 -12.80 6.52 99.48 0.65 -12.16 16 23 C -0.18 -5.29 4.86 -10.79 -0.05 -5.34 16 24 C -0.15 -3.31 9.63 30.62 0.29 -3.02 16 25 C -0.16 -3.33 9.72 30.62 0.30 -3.03 16 26 N -0.23 -7.64 12.05 -49.99 -0.60 -8.24 16 27 N -0.08 -2.51 12.91 37.02 0.48 -2.03 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.97 8.06 -2.38 -0.02 0.95 16 34 H 0.08 0.77 7.43 -2.39 -0.02 0.76 16 35 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.22 4.34 7.62 -2.91 -0.02 4.31 16 38 H 0.41 12.76 8.08 -92.70 -0.75 12.01 16 39 H 0.08 1.95 6.81 -2.38 -0.02 1.93 16 40 H 0.08 1.71 7.00 -2.39 -0.02 1.70 16 41 H 0.06 1.97 6.12 -2.39 -0.01 1.96 16 42 H 0.03 1.38 6.22 -2.39 -0.01 1.37 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.36 17.80 4.49 -92.71 -0.42 17.38 16 45 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 46 H 0.09 3.07 7.09 -2.39 -0.02 3.05 16 47 H 0.12 2.16 5.88 -2.39 -0.01 2.14 16 48 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.11 1.99 7.39 -2.39 -0.02 1.97 16 Total: -1.00 -81.45 397.23 3.46 -77.99 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.26 Total: 39.03 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.42 Total: 3.35 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -4.55 Total: -149.17 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.90 Total: 50.66 kcal Total: -81.45 3.46 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714165874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.286 kcal (2) G-P(sol) polarization free energy of solvation -81.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds