Wall clock time and date at job start Tue Mar 31 2020 19:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 N 1.46497 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99613 * 269.55423 * 4 3 2 6 6 H 1.07993 * 120.00332 * 322.08456 * 5 4 3 7 7 C 1.38814 * 119.99709 * 142.08645 * 5 4 3 8 8 N 1.31620 * 120.00025 * 156.97551 * 7 5 4 9 9 Si 1.86800 * 120.00179 * 336.96811 * 7 5 4 10 10 H 1.48504 * 109.47043 * 95.70313 * 9 7 5 11 11 H 1.48497 * 109.47398 * 215.70277 * 9 7 5 12 12 H 1.48499 * 109.47157 * 335.70586 * 9 7 5 13 13 C 1.46496 * 120.00488 * 89.55299 * 4 3 2 14 14 C 1.52999 * 109.47281 * 89.99888 * 13 4 3 15 15 N 1.46496 * 109.47281 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00167 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00348 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.45181 * 299.95769 * 18 16 15 20 20 C 1.53140 * 109.44888 * 59.88988 * 18 16 15 21 21 C 1.53463 * 109.29989 * 189.46579 * 20 18 16 22 22 C 1.50794 * 108.13947 * 311.28406 * 21 20 18 23 23 N 1.29835 * 128.52852 * 195.92143 * 22 21 20 24 24 N 1.28915 * 109.47579 * 179.62163 * 23 22 21 25 25 C 1.30833 * 109.74244 * 0.44480 * 24 23 22 26 26 C 1.50698 * 126.46539 * 179.89050 * 25 24 23 27 27 N 1.34696 * 107.07140 * 359.62707 * 25 24 23 28 28 C 1.46252 * 128.84690 * 180.11285 * 27 25 24 29 29 H 1.08999 * 109.46889 * 300.00128 * 1 2 3 30 30 H 1.09005 * 109.46944 * 59.99716 * 1 2 3 31 31 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46902 * 240.00429 * 2 1 3 33 33 H 1.08994 * 109.47325 * 120.00481 * 2 1 3 34 34 H 1.08999 * 109.47295 * 60.00121 * 3 2 1 35 35 H 1.09005 * 109.47395 * 300.00007 * 3 2 1 36 36 H 0.96991 * 120.00288 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47101 * 330.00110 * 13 4 3 38 38 H 1.09002 * 109.47580 * 210.00430 * 13 4 3 39 39 H 1.09000 * 109.46872 * 60.00082 * 14 13 4 40 40 H 1.08998 * 109.47224 * 300.00223 * 14 13 4 41 41 H 0.96999 * 120.00018 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.50064 * 309.41929 * 20 18 16 43 43 H 1.09002 * 109.49799 * 69.48697 * 20 18 16 44 44 H 1.08999 * 109.73053 * 70.95227 * 21 20 18 45 45 H 1.09002 * 109.73033 * 191.57683 * 21 20 18 46 46 H 1.09005 * 109.47077 * 269.68943 * 26 25 24 47 47 H 1.08999 * 109.47408 * 149.68400 * 26 25 24 48 48 H 1.09004 * 109.47018 * 29.68171 * 26 25 24 49 49 H 1.09000 * 109.59299 * 316.86173 * 28 27 25 50 50 H 1.08997 * 109.59506 * 77.16781 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4515 1.1851 6 1 3.8215 2.0326 2.0174 7 6 5.3586 0.7138 1.3171 8 7 6.2460 1.0445 2.2311 9 14 5.6715 -0.7486 0.1977 10 1 6.5083 -0.3215 -0.9524 11 1 6.3787 -1.8108 0.9569 12 1 4.3761 -1.2759 -0.3016 13 6 4.2371 1.4327 -1.2695 14 6 4.4919 2.8718 -1.7223 15 7 5.2235 2.8621 -2.9916 16 6 5.5597 4.0247 -3.5845 17 8 5.2570 5.0791 -3.0671 18 6 6.3117 4.0148 -4.8905 19 1 7.2645 3.5026 -4.7568 20 6 5.4837 3.2821 -5.9501 21 6 6.3418 3.0652 -7.2038 22 6 6.9968 4.3767 -7.5570 23 7 7.5659 4.7222 -8.6717 24 7 7.9979 5.9331 -8.5765 25 6 7.7279 6.4064 -7.3871 26 6 8.0664 7.7817 -6.8724 27 7 7.0851 5.4346 -6.7113 28 6 6.5664 5.4570 -5.3440 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 7.0623 0.5289 2.3236 37 1 3.6477 0.9131 -2.0250 38 1 5.1895 0.9199 -1.1357 39 1 5.0813 3.3914 -0.9669 40 1 3.5395 3.3846 -1.8563 41 1 5.4652 2.0189 -3.4056 42 1 5.1622 2.3174 -5.5577 43 1 4.6092 3.8804 -6.2062 44 1 7.1061 2.3149 -7.0012 45 1 5.7110 2.7342 -8.0288 46 1 9.0480 7.7611 -6.3989 47 1 7.3177 8.0913 -6.1433 48 1 8.0785 8.4877 -7.7029 49 1 7.2969 5.9242 -4.6836 50 1 5.6344 6.0215 -5.3159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714661078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:20 Heat of formation + Delta-G solvation = 48.673204 kcal Electronic energy + Delta-G solvation = -29231.838378 eV Core-core repulsion = 25295.621118 eV Total energy + Delta-G solvation = -3936.217260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.55898 -40.13264 -37.27197 -36.72009 -34.79694 -34.32586 -32.96348 -31.99373 -31.34906 -30.77172 -28.50473 -27.62174 -25.95022 -25.29868 -23.69194 -23.00008 -21.99507 -21.62272 -20.73062 -20.05502 -19.67904 -17.84184 -16.93453 -16.81014 -16.31265 -16.07159 -15.70487 -15.40539 -15.15876 -14.61269 -14.51439 -14.27635 -14.21398 -14.09810 -13.75945 -13.41890 -13.24620 -12.97368 -12.87328 -12.63460 -12.58561 -12.49417 -12.44550 -11.98173 -11.77315 -11.62176 -11.45413 -11.32369 -11.27832 -10.89196 -10.80006 -10.58594 -10.54270 -10.36036 -10.12567 -10.01040 -9.88727 -9.66648 -9.20170 -8.92278 -8.64149 -7.02496 -6.13378 -3.56109 1.56045 2.11941 2.49239 2.63183 3.08604 3.14283 3.34580 3.38070 3.72669 3.94282 4.10472 4.16143 4.23380 4.37464 4.57196 4.65671 4.76773 4.82119 4.94366 4.96682 5.09731 5.15639 5.16608 5.22426 5.33188 5.38866 5.50780 5.53103 5.54910 5.56833 5.62269 5.70597 5.73423 5.87577 5.95227 5.99389 6.03673 6.28901 6.34136 6.41661 6.45238 6.50764 6.59673 6.67846 6.78731 6.96144 7.47758 7.90460 8.14280 8.26341 8.52053 8.83008 9.55857 9.94933 11.01924 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002512 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.675400 B =11142.612665 C =11524.869873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.599 5.599 5 C -0.272 4.272 6 H 0.081 0.919 7 C 0.038 3.962 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.266 1.266 13 C 0.129 3.871 14 C 0.099 3.901 15 N -0.718 5.718 16 C 0.521 3.479 17 O -0.539 6.539 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.119 4.119 21 C -0.031 4.031 22 C 0.172 3.828 23 N -0.291 5.291 24 N -0.302 5.302 25 C 0.180 3.820 26 C -0.068 4.068 27 N -0.469 5.469 28 C 0.124 3.876 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.397 0.603 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 4.864 -16.128 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.320 5.320 5 C -0.401 4.401 6 H 0.098 0.902 7 C -0.163 4.163 8 N -0.534 5.534 9 Si 0.704 3.296 10 H -0.216 1.216 11 H -0.228 1.228 12 H -0.190 1.190 13 C 0.002 3.998 14 C -0.026 4.026 15 N -0.368 5.368 16 C 0.305 3.695 17 O -0.416 6.416 18 C -0.147 4.147 19 H 0.129 0.871 20 C -0.157 4.157 21 C -0.071 4.071 22 C -0.096 4.096 23 N -0.131 5.131 24 N -0.142 5.142 25 C -0.088 4.088 26 C -0.127 4.127 27 N -0.160 5.160 28 C 0.001 3.999 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.231 0.769 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.122 0.878 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.586 5.539 -16.992 17.943 hybrid contribution 0.090 -1.304 0.668 1.468 sum -1.496 4.234 -16.324 16.930 Atomic orbital electron populations 1.21732 0.97100 1.00602 1.01081 1.22130 0.93920 1.00650 1.01858 1.20993 0.83663 0.93636 0.99281 1.44013 1.00608 1.85997 1.01430 1.18786 1.05995 1.24321 0.90962 0.90165 1.25502 0.96791 0.97599 0.96444 1.69879 1.08326 1.39129 1.36077 0.86984 0.78021 0.84657 0.79918 1.21602 1.22823 1.19010 1.21321 0.97032 0.92710 0.88759 1.22359 0.95820 1.01500 0.82961 1.46087 1.57816 1.07860 1.25049 1.19934 0.79737 0.84504 0.85359 1.90740 1.54706 1.30682 1.65467 1.21649 1.01759 0.96555 0.94741 0.87068 1.21752 0.98259 1.02153 0.93533 1.20226 0.98795 0.89513 0.98545 1.24699 1.03568 0.93070 0.88225 1.74037 1.13407 1.06329 1.19315 1.74479 1.21063 1.03571 1.15133 1.24682 0.98733 0.94743 0.90593 1.20238 1.02839 0.87387 1.02276 1.46021 1.43428 1.12395 1.14125 1.21770 1.01920 0.97613 0.78594 0.92993 0.93485 0.93691 0.93337 0.91690 0.92760 0.94365 0.92593 0.93756 0.92417 0.90361 0.91994 0.76905 0.88783 0.90093 0.88296 0.87643 0.89492 0.90190 0.88638 0.87787 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.15 -2.43 6.26 -26.73 -0.17 -2.60 16 3 C 0.15 2.70 5.67 -4.04 -0.02 2.68 16 4 N -0.60 -12.79 2.07 -173.24 -0.36 -13.15 16 5 C -0.27 -7.05 9.90 -15.06 -0.15 -7.20 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 8 N -0.89 -25.95 13.97 55.49 0.78 -25.17 16 9 Si 0.87 20.38 25.10 -169.99 -4.27 16.11 16 10 H -0.29 -6.34 6.68 56.52 0.38 -5.96 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.13 2.38 4.63 -4.04 -0.02 2.36 16 14 C 0.10 1.68 6.00 -4.04 -0.02 1.65 16 15 N -0.72 -9.27 5.38 -60.30 -0.32 -9.60 16 16 C 0.52 6.55 7.15 -10.99 -0.08 6.47 16 17 O -0.54 -8.84 15.83 5.55 0.09 -8.75 16 18 C -0.13 -1.09 2.54 -91.53 -0.23 -1.32 16 19 H 0.11 0.87 8.12 -51.93 -0.42 0.45 16 20 C -0.12 -0.81 5.22 -26.42 -0.14 -0.95 16 21 C -0.03 -0.23 6.33 -27.60 -0.17 -0.40 16 22 C 0.17 1.93 7.75 -155.30 -1.20 0.72 16 23 N -0.29 -4.17 12.21 32.76 0.40 -3.77 16 24 N -0.30 -4.32 12.23 32.70 0.40 -3.92 16 25 C 0.18 2.02 8.07 -155.45 -1.25 0.76 16 26 C -0.07 -0.48 10.28 36.00 0.37 -0.11 16 27 N -0.47 -4.90 3.11 -110.87 -0.35 -5.24 16 28 C 0.12 1.12 5.46 -4.01 -0.02 1.10 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 37 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.06 1.18 3.38 -51.93 -0.18 1.01 16 39 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.40 4.03 7.80 -40.82 -0.32 3.72 16 42 H 0.09 0.49 7.32 -51.93 -0.38 0.11 16 43 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.10 0.97 7.80 -51.93 -0.40 0.56 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -33.96 400.08 -8.89 -42.85 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.45 Total: 2.09 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.84 Total: 2.53 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.55 Total: -60.85 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.27 Total: 16.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.96 -8.89 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714661078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.523 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds