Wall clock time and date at job start Tue Mar 31 2020 19:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 N 1.46497 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99613 * 269.55423 * 4 3 2 6 6 H 1.07993 * 120.00332 * 322.08456 * 5 4 3 7 7 C 1.38814 * 119.99709 * 142.08645 * 5 4 3 8 8 N 1.31620 * 120.00025 * 156.97551 * 7 5 4 9 9 Si 1.86800 * 120.00179 * 336.96811 * 7 5 4 10 10 H 1.48504 * 109.47043 * 95.70313 * 9 7 5 11 11 H 1.48497 * 109.47398 * 215.70277 * 9 7 5 12 12 H 1.48499 * 109.47157 * 335.70586 * 9 7 5 13 13 C 1.46496 * 120.00488 * 89.55299 * 4 3 2 14 14 C 1.52999 * 109.47281 * 89.99888 * 13 4 3 15 15 N 1.46496 * 109.47281 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00167 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00348 * 180.02562 * 16 15 14 19 19 H 1.09000 * 109.45181 * 299.95769 * 18 16 15 20 20 C 1.53140 * 109.44888 * 59.88988 * 18 16 15 21 21 C 1.53463 * 109.29989 * 189.46579 * 20 18 16 22 22 C 1.50794 * 108.13947 * 311.28406 * 21 20 18 23 23 N 1.29835 * 128.52852 * 195.92143 * 22 21 20 24 24 N 1.28915 * 109.47579 * 179.62163 * 23 22 21 25 25 C 1.30833 * 109.74244 * 0.44480 * 24 23 22 26 26 C 1.50698 * 126.46539 * 179.89050 * 25 24 23 27 27 N 1.34696 * 107.07140 * 359.62707 * 25 24 23 28 28 C 1.46252 * 128.84690 * 180.11285 * 27 25 24 29 29 H 1.08999 * 109.46889 * 300.00128 * 1 2 3 30 30 H 1.09005 * 109.46944 * 59.99716 * 1 2 3 31 31 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46902 * 240.00429 * 2 1 3 33 33 H 1.08994 * 109.47325 * 120.00481 * 2 1 3 34 34 H 1.08999 * 109.47295 * 60.00121 * 3 2 1 35 35 H 1.09005 * 109.47395 * 300.00007 * 3 2 1 36 36 H 0.96991 * 120.00288 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47101 * 330.00110 * 13 4 3 38 38 H 1.09002 * 109.47580 * 210.00430 * 13 4 3 39 39 H 1.09000 * 109.46872 * 60.00082 * 14 13 4 40 40 H 1.08998 * 109.47224 * 300.00223 * 14 13 4 41 41 H 0.96999 * 120.00018 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.50064 * 309.41929 * 20 18 16 43 43 H 1.09002 * 109.49799 * 69.48697 * 20 18 16 44 44 H 1.08999 * 109.73053 * 70.95227 * 21 20 18 45 45 H 1.09002 * 109.73033 * 191.57683 * 21 20 18 46 46 H 1.09005 * 109.47077 * 269.68943 * 26 25 24 47 47 H 1.08999 * 109.47408 * 149.68400 * 26 25 24 48 48 H 1.09004 * 109.47018 * 29.68171 * 26 25 24 49 49 H 1.09000 * 109.59299 * 316.86173 * 28 27 25 50 50 H 1.08997 * 109.59506 * 77.16781 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4515 1.1851 6 1 3.8215 2.0326 2.0174 7 6 5.3586 0.7138 1.3171 8 7 6.2460 1.0445 2.2311 9 14 5.6715 -0.7486 0.1977 10 1 6.5083 -0.3215 -0.9524 11 1 6.3787 -1.8108 0.9569 12 1 4.3761 -1.2759 -0.3016 13 6 4.2371 1.4327 -1.2695 14 6 4.4919 2.8718 -1.7223 15 7 5.2235 2.8621 -2.9916 16 6 5.5597 4.0247 -3.5845 17 8 5.2570 5.0791 -3.0671 18 6 6.3117 4.0148 -4.8905 19 1 7.2645 3.5026 -4.7568 20 6 5.4837 3.2821 -5.9501 21 6 6.3418 3.0652 -7.2038 22 6 6.9968 4.3767 -7.5570 23 7 7.5659 4.7222 -8.6717 24 7 7.9979 5.9331 -8.5765 25 6 7.7279 6.4064 -7.3871 26 6 8.0664 7.7817 -6.8724 27 7 7.0851 5.4346 -6.7113 28 6 6.5664 5.4570 -5.3440 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 7.0623 0.5289 2.3236 37 1 3.6477 0.9131 -2.0250 38 1 5.1895 0.9199 -1.1357 39 1 5.0813 3.3914 -0.9669 40 1 3.5395 3.3846 -1.8563 41 1 5.4652 2.0189 -3.4056 42 1 5.1622 2.3174 -5.5577 43 1 4.6092 3.8804 -6.2062 44 1 7.1061 2.3149 -7.0012 45 1 5.7110 2.7342 -8.0288 46 1 9.0480 7.7611 -6.3989 47 1 7.3177 8.0913 -6.1433 48 1 8.0785 8.4877 -7.7029 49 1 7.2969 5.9242 -4.6836 50 1 5.6344 6.0215 -5.3159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714661078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:19 Heat of formation + Delta-G solvation = 26.803053 kcal Electronic energy + Delta-G solvation = -29232.786739 eV Core-core repulsion = 25295.621118 eV Total energy + Delta-G solvation = -3937.165621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.38942 -41.15723 -38.57599 -37.80863 -35.97285 -35.12972 -34.55009 -33.24838 -32.60718 -31.47857 -29.85667 -28.35430 -27.53409 -26.27466 -24.68053 -24.14125 -23.41298 -22.43960 -21.75391 -21.46790 -20.55024 -19.01326 -18.36436 -17.72305 -17.48700 -17.14963 -17.06999 -16.51505 -16.14919 -15.84384 -15.63091 -15.28888 -15.18645 -15.03117 -14.83829 -14.59490 -14.27628 -14.17270 -14.04816 -13.94090 -13.52104 -13.51536 -13.24667 -13.18777 -12.82093 -12.66690 -12.63091 -12.41092 -12.27667 -12.22776 -12.14094 -12.06284 -11.84957 -11.46156 -11.39966 -11.34266 -11.17838 -10.97787 -10.63185 -10.11243 -10.04354 -8.81252 -8.19386 -5.59247 0.77288 1.28246 1.32766 1.45614 1.50374 1.56054 1.75012 2.08626 2.42778 3.03394 3.07167 3.23051 3.30984 3.48469 3.52456 3.58825 3.88991 3.98166 4.08296 4.13922 4.21673 4.25239 4.27240 4.31396 4.45811 4.53816 4.56489 4.59795 4.64831 4.66399 4.80376 4.81616 4.83348 4.93326 4.94613 4.98459 5.00420 5.02589 5.11076 5.20674 5.21512 5.28925 5.38384 5.45439 5.60936 5.85103 5.95232 6.19541 6.47450 6.98501 7.15627 7.62494 7.65085 8.02486 9.00484 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002512 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.675400 B =11142.612665 C =11524.869873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.146 3.854 4 N -0.612 5.612 5 C -0.259 4.259 6 H 0.034 0.966 7 C -0.022 4.022 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.262 1.262 11 H -0.317 1.317 12 H -0.248 1.248 13 C 0.128 3.872 14 C 0.117 3.883 15 N -0.709 5.709 16 C 0.524 3.476 17 O -0.580 6.580 18 C -0.113 4.113 19 H 0.129 0.871 20 C -0.111 4.111 21 C -0.027 4.027 22 C 0.174 3.826 23 N -0.335 5.335 24 N -0.345 5.345 25 C 0.179 3.821 26 C -0.068 4.068 27 N -0.469 5.469 28 C 0.125 3.875 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.108 0.892 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 3.379 -18.674 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.022 3.978 4 N -0.334 5.334 5 C -0.389 4.389 6 H 0.052 0.948 7 C -0.218 4.218 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.188 1.188 11 H -0.246 1.246 12 H -0.172 1.172 13 C 0.002 3.998 14 C -0.009 4.009 15 N -0.361 5.361 16 C 0.310 3.690 17 O -0.460 6.460 18 C -0.134 4.134 19 H 0.147 0.853 20 C -0.149 4.149 21 C -0.066 4.066 22 C -0.095 4.095 23 N -0.173 5.173 24 N -0.186 5.186 25 C -0.089 4.089 26 C -0.127 4.127 27 N -0.160 5.160 28 C 0.002 3.998 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.120 0.880 49 H 0.127 0.873 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.796 4.039 -19.611 20.217 hybrid contribution 0.387 -0.704 1.518 1.717 sum -2.409 3.335 -18.094 18.555 Atomic orbital electron populations 1.21665 0.94198 1.01840 1.02085 1.22014 0.96453 0.98850 1.00614 1.21127 0.81690 0.94990 1.00034 1.44122 1.02020 1.86291 1.00991 1.18592 1.05836 1.22723 0.91783 0.94791 1.26159 0.96676 1.00294 0.98694 1.70032 1.09244 1.40701 1.39354 0.85880 0.78711 0.79954 0.78454 1.18824 1.24590 1.17200 1.21393 0.96617 0.93555 0.88210 1.21815 0.95450 0.99962 0.83720 1.45854 1.57486 1.09122 1.23635 1.20498 0.78901 0.83484 0.86086 1.90734 1.56231 1.32185 1.66800 1.21576 1.02191 0.96800 0.92866 0.85350 1.21769 0.97557 1.03064 0.92555 1.20439 0.99318 0.87832 0.99058 1.25437 1.02318 0.94287 0.87476 1.73937 1.15318 1.06850 1.21222 1.74385 1.22929 1.04234 1.17002 1.25358 0.97639 0.95954 0.89964 1.20423 1.03959 0.85403 1.02878 1.46116 1.43321 1.12191 1.14388 1.21804 1.01907 0.98077 0.77975 0.93037 0.91479 0.92366 0.92700 0.94748 0.94277 0.91357 0.92917 0.89710 0.94005 0.94959 0.91883 0.74763 0.86206 0.90372 0.86372 0.86195 0.88154 0.88690 0.87966 0.87343 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.14 -4.33 6.26 30.60 0.19 -4.13 16 3 C 0.15 5.02 5.67 86.38 0.49 5.51 16 4 N -0.61 -25.60 2.07 -702.02 -1.45 -27.05 16 5 C -0.26 -13.85 9.90 84.03 0.83 -13.01 16 6 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 7 C -0.02 -1.20 5.29 84.86 0.45 -0.75 16 8 N -0.95 -57.36 13.97 21.65 0.30 -57.06 16 9 Si 0.94 41.73 25.10 68.60 1.72 43.45 16 10 H -0.26 -10.38 6.68 99.48 0.66 -9.72 16 11 H -0.32 -14.81 7.11 99.48 0.71 -14.11 16 12 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 13 C 0.13 4.39 4.63 86.38 0.40 4.79 16 14 C 0.12 3.79 6.00 86.38 0.52 4.31 16 15 N -0.71 -16.17 5.38 -463.07 -2.49 -18.66 16 16 C 0.52 11.94 7.15 87.66 0.63 12.56 16 17 O -0.58 -18.43 15.83 -3.05 -0.05 -18.48 16 18 C -0.11 -1.61 2.54 -11.39 -0.03 -1.64 16 19 H 0.13 1.49 8.12 -2.39 -0.02 1.47 16 20 C -0.11 -1.06 5.22 30.80 0.16 -0.90 16 21 C -0.03 -0.30 6.33 30.03 0.19 -0.11 16 22 C 0.17 3.57 7.75 138.13 1.07 4.64 16 23 N -0.33 -9.40 12.21 -50.28 -0.61 -10.01 16 24 N -0.35 -9.86 12.23 -50.47 -0.62 -10.48 16 25 C 0.18 3.86 8.07 138.14 1.11 4.98 16 26 C -0.07 -0.86 10.28 71.24 0.73 -0.13 16 27 N -0.47 -9.03 3.11 -504.68 -1.57 -10.60 16 28 C 0.12 2.01 5.46 86.53 0.47 2.48 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 35 H 0.07 1.95 8.08 -2.38 -0.02 1.93 16 36 H 0.26 15.01 8.31 -92.72 -0.77 14.24 16 37 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 38 H 0.04 1.59 3.38 -2.39 -0.01 1.58 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.42 6.53 7.80 -92.71 -0.72 5.81 16 42 H 0.12 0.59 7.32 -2.39 -0.02 0.58 16 43 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.09 0.91 8.04 -2.39 -0.02 0.89 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.10 1.71 7.80 -2.39 -0.02 1.69 16 Total: -1.00 -79.22 400.08 3.33 -75.89 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.17 Total: 16.91 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.93 Total: 16.09 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -6.44 Total: -133.86 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.72 Total: 43.45 kcal Total: -79.22 3.33 -75.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714661078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.696 kcal (2) G-P(sol) polarization free energy of solvation -79.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds