Wall clock time and date at job start Tue Mar 31 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.52997 * 109.47218 * 239.99927 * 2 1 3 5 5 N 1.46502 * 109.46895 * 119.99885 * 2 1 3 6 6 C 1.34584 * 125.74849 * 75.02136 * 5 2 1 7 7 N 1.30872 * 107.62581 * 179.72666 * 6 5 2 8 8 C 1.34556 * 107.26449 * 0.36613 * 7 6 5 9 9 C 1.47870 * 126.04412 * 179.89282 * 8 7 6 10 10 O 1.21554 * 119.99950 * 179.68559 * 9 8 7 11 11 N 1.34775 * 120.00125 * 359.68904 * 9 8 7 12 12 C 1.46497 * 120.00083 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46967 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.78170 * 308.24051 * 14 13 12 16 16 C 1.55158 * 110.72145 * 184.99928 * 14 13 12 17 17 C 1.54909 * 101.61642 * 206.15534 * 16 14 13 18 18 N 1.47423 * 104.83351 * 36.99324 * 17 16 14 19 19 C 1.36936 * 125.64594 * 155.90840 * 18 17 16 20 20 H 1.08007 * 120.00033 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00281 * 359.97114 * 19 18 17 22 22 N 1.31616 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99983 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47406 * 59.99989 * 23 21 19 25 25 H 1.48499 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47250 * 299.99992 * 23 21 19 27 27 C 1.47016 * 108.70440 * 335.86643 * 18 17 16 28 28 N 1.28849 * 125.74497 * 254.97276 * 5 2 1 29 29 H 1.08998 * 109.47182 * 300.00092 * 1 2 3 30 30 H 1.08995 * 109.47060 * 60.00486 * 1 2 3 31 31 H 1.09006 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47316 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46787 * 300.00063 * 3 2 1 34 34 H 1.08998 * 109.47245 * 59.99947 * 3 2 1 35 35 H 1.09003 * 109.47290 * 300.00356 * 4 2 1 36 36 H 1.09007 * 109.47129 * 59.99572 * 4 2 1 37 37 H 1.08993 * 109.47586 * 179.97438 * 4 2 1 38 38 H 1.08001 * 126.18638 * 359.96428 * 6 5 2 39 39 H 0.97002 * 120.00212 * 0.02562 * 11 9 8 40 40 H 1.09007 * 109.46821 * 60.00505 * 12 11 9 41 41 H 1.08996 * 109.47722 * 300.00172 * 12 11 9 42 42 H 1.08996 * 109.47404 * 60.00468 * 13 12 11 43 43 H 1.09005 * 109.47092 * 300.00001 * 13 12 11 44 44 H 1.09002 * 111.00366 * 88.06052 * 16 14 13 45 45 H 1.09002 * 111.00429 * 324.25114 * 16 14 13 46 46 H 1.09000 * 110.36449 * 155.82966 * 17 16 14 47 47 H 1.09002 * 110.36579 * 278.03887 * 17 16 14 48 48 H 0.96996 * 120.00056 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.88531 * 120.47268 * 27 18 17 50 50 H 1.08998 * 109.88872 * 241.64988 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0142 -2.0221 1.3921 7 7 2.5334 -2.2507 2.5715 8 6 2.8504 -1.0574 3.1064 9 6 3.4625 -0.8339 4.4338 10 8 3.7089 0.2964 4.8068 11 7 3.7472 -1.8834 5.2300 12 6 4.3541 -1.6620 6.5448 13 6 4.5728 -3.0079 7.2388 14 6 5.2060 -2.7766 8.6122 15 1 6.0914 -2.1464 8.5287 16 6 5.5560 -4.1278 9.2900 17 6 5.5066 -3.7461 10.7905 18 7 4.3923 -2.7869 10.8995 19 6 3.6715 -2.5267 12.0343 20 1 2.8706 -1.8024 12.0111 21 6 3.9699 -3.1939 13.2144 22 7 4.9461 -4.0762 13.2428 23 14 2.9860 -2.8394 14.7622 24 1 1.5552 -3.1566 14.5228 25 1 3.4990 -3.6754 15.8772 26 1 3.1220 -1.4040 15.1173 27 6 4.1840 -2.1554 9.5883 28 7 2.5248 -0.1255 2.2375 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6519 -2.7674 0.6996 39 1 3.5509 -2.7855 4.9321 40 1 3.6921 -1.0435 7.1510 41 1 5.3122 -1.1569 6.4224 42 1 5.2349 -3.6260 6.6325 43 1 3.6148 -3.5135 7.3612 44 1 6.5536 -4.4613 9.0043 45 1 4.8102 -4.8873 9.0553 46 1 5.3090 -4.6279 11.3999 47 1 6.4432 -3.2782 11.0939 48 1 5.1544 -4.5427 14.0674 49 1 3.1708 -2.3531 9.2384 50 1 4.3492 -1.0806 9.6640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714879675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:46 Heat of formation + Delta-G solvation = 71.006789 kcal Electronic energy + Delta-G solvation = -28230.175020 eV Core-core repulsion = 24294.926217 eV Total energy + Delta-G solvation = -3935.248803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.81559 -39.54094 -37.86672 -37.63811 -35.19417 -33.20231 -32.74365 -31.43992 -30.63502 -28.93047 -28.23456 -28.10691 -26.79266 -25.15115 -24.06493 -23.35527 -22.10560 -20.72420 -20.51299 -20.01380 -19.29670 -18.06846 -16.92210 -16.86412 -16.80798 -16.09131 -15.61258 -15.06352 -14.95847 -14.81308 -14.56727 -14.42981 -13.95238 -13.58982 -13.50752 -13.39994 -13.11278 -12.98404 -12.51101 -12.45019 -12.40703 -12.19833 -12.02216 -11.83613 -11.65469 -11.62014 -11.50626 -11.00858 -10.84528 -10.71698 -10.70129 -10.68292 -10.36444 -10.10481 -9.93133 -9.83905 -9.83431 -9.67911 -9.39407 -9.04513 -8.56909 -6.73824 -5.57377 -2.98395 1.18480 1.73836 1.83509 2.94446 3.28148 3.45936 3.49660 3.51257 3.67920 3.86112 3.95121 4.06069 4.33225 4.54511 4.56448 4.71010 4.83513 4.89695 4.95117 5.02655 5.03693 5.11798 5.18979 5.24155 5.38553 5.42068 5.55390 5.60158 5.67144 5.71605 5.73124 5.86700 5.96048 6.02973 6.10672 6.19693 6.25463 6.31201 6.44725 6.48683 6.69373 6.72914 6.86081 7.07554 7.36472 7.61194 7.71208 7.78402 7.94171 8.12915 8.45132 9.30780 9.91970 10.57764 11.46484 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.001730 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.287137 B =16182.977543 C =16584.960723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.293 5.293 6 C 0.189 3.811 7 N -0.484 5.484 8 C 0.140 3.860 9 C 0.612 3.388 10 O -0.520 6.520 11 N -0.707 5.707 12 C 0.119 3.881 13 C -0.116 4.116 14 C -0.097 4.097 15 H 0.073 0.927 16 C -0.138 4.138 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.924 5.924 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.139 3.861 28 N -0.246 5.246 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.222 0.778 39 H 0.409 0.591 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.023 0.977 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 3.577 -34.215 35.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.209 5.209 8 C -0.140 4.140 9 C 0.394 3.606 10 O -0.392 6.392 11 N -0.359 5.359 12 C -0.004 4.004 13 C -0.154 4.154 14 C -0.117 4.117 15 H 0.091 0.909 16 C -0.177 4.177 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.573 5.573 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.013 3.987 28 N -0.085 5.085 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.123 0.877 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.236 4.724 -33.394 34.299 hybrid contribution -0.749 -0.384 0.300 0.894 sum -6.985 4.341 -33.094 34.101 Atomic orbital electron populations 1.22273 0.91628 1.03699 1.04251 1.21188 0.95388 0.94397 0.80587 1.22005 1.02618 0.92190 1.03886 1.22265 1.02731 1.01172 0.95657 1.47803 1.41414 1.06278 1.13476 1.26305 1.01595 0.86467 0.96297 1.71282 1.16540 1.25939 1.07160 1.23802 1.06404 0.85661 0.98103 1.16282 0.78262 0.85066 0.81038 1.90843 1.52565 1.22510 1.73304 1.45762 1.62694 1.09418 1.18030 1.21598 0.98530 0.98760 0.81481 1.21797 1.01775 0.95501 0.96355 1.22104 0.98525 0.98545 0.92520 0.90889 1.23040 0.99621 0.95392 0.99664 1.21915 0.89406 0.95831 0.90224 1.44509 1.37601 1.45849 1.05163 1.19054 1.10683 1.18625 0.86477 0.90614 1.24781 0.98845 0.99377 0.97875 1.69796 1.31743 1.29687 1.26037 0.86155 0.79265 0.77454 0.82652 1.21226 1.21613 1.21276 1.21391 0.95513 0.95205 0.86592 1.74302 1.13342 1.25440 0.95401 0.91157 0.89502 0.91289 0.91232 0.90245 0.90446 0.91077 0.89249 0.91106 0.76219 0.75527 0.90624 0.91122 0.91440 0.90988 0.92502 0.92175 0.87737 0.97176 0.93794 0.95912 0.96229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.72 37.16 0.32 -0.19 16 2 C 0.17 0.77 1.23 -131.82 -0.16 0.61 16 3 C -0.15 -0.78 8.04 37.16 0.30 -0.48 16 4 C -0.16 -0.32 8.28 37.16 0.31 -0.01 16 5 N -0.29 -2.45 3.17 -49.83 -0.16 -2.61 16 6 C 0.19 1.45 11.71 -90.48 -1.06 0.39 16 7 N -0.48 -5.43 11.09 -12.36 -0.14 -5.57 16 8 C 0.14 1.90 7.96 -156.35 -1.24 0.66 16 9 C 0.61 9.39 7.83 -12.32 -0.10 9.29 16 10 O -0.52 -9.70 17.09 5.32 0.09 -9.61 16 11 N -0.71 -9.29 5.55 -61.24 -0.34 -9.63 16 12 C 0.12 1.65 5.56 -4.04 -0.02 1.63 16 13 C -0.12 -1.59 4.73 -26.73 -0.13 -1.71 16 14 C -0.10 -1.70 2.93 -88.75 -0.26 -1.96 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.14 -2.64 6.53 -24.58 -0.16 -2.80 16 17 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 18 N -0.61 -16.08 3.39 -170.04 -0.58 -16.66 16 19 C -0.22 -6.35 10.27 -15.06 -0.15 -6.51 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 22 N -0.92 -27.57 10.09 55.49 0.56 -27.01 16 23 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.14 3.00 6.24 -3.04 -0.02 2.98 16 28 N -0.25 -3.11 11.09 32.08 0.36 -2.76 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.08 0.55 8.02 -51.93 -0.42 0.14 16 35 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 36 H 0.09 0.03 8.14 -51.92 -0.42 -0.40 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.22 0.62 7.53 -52.49 -0.40 0.23 16 39 H 0.41 4.61 8.18 -40.82 -0.33 4.28 16 40 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 46 H 0.10 2.92 5.88 -51.93 -0.31 2.61 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -36.37 404.05 -10.13 -46.50 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.50 Total: -1.57 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.49 Total: 5.17 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.30 Total: -64.24 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.37 -10.13 -46.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714879675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.506 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds