Wall clock time and date at job start Tue Mar 31 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.52997 * 109.47218 * 239.99927 * 2 1 3 5 5 N 1.46502 * 109.46895 * 119.99885 * 2 1 3 6 6 C 1.34584 * 125.74849 * 75.02136 * 5 2 1 7 7 N 1.30872 * 107.62581 * 179.72666 * 6 5 2 8 8 C 1.34556 * 107.26449 * 0.36613 * 7 6 5 9 9 C 1.47870 * 126.04412 * 179.89282 * 8 7 6 10 10 O 1.21554 * 119.99950 * 179.68559 * 9 8 7 11 11 N 1.34775 * 120.00125 * 359.68904 * 9 8 7 12 12 C 1.46497 * 120.00083 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46967 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.78170 * 308.24051 * 14 13 12 16 16 C 1.55158 * 110.72145 * 184.99928 * 14 13 12 17 17 C 1.54909 * 101.61642 * 206.15534 * 16 14 13 18 18 N 1.47423 * 104.83351 * 36.99324 * 17 16 14 19 19 C 1.36936 * 125.64594 * 155.90840 * 18 17 16 20 20 H 1.08007 * 120.00033 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00281 * 359.97114 * 19 18 17 22 22 N 1.31616 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99983 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47406 * 59.99989 * 23 21 19 25 25 H 1.48499 * 109.47231 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47250 * 299.99992 * 23 21 19 27 27 C 1.47016 * 108.70440 * 335.86643 * 18 17 16 28 28 N 1.28849 * 125.74497 * 254.97276 * 5 2 1 29 29 H 1.08998 * 109.47182 * 300.00092 * 1 2 3 30 30 H 1.08995 * 109.47060 * 60.00486 * 1 2 3 31 31 H 1.09006 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47316 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46787 * 300.00063 * 3 2 1 34 34 H 1.08998 * 109.47245 * 59.99947 * 3 2 1 35 35 H 1.09003 * 109.47290 * 300.00356 * 4 2 1 36 36 H 1.09007 * 109.47129 * 59.99572 * 4 2 1 37 37 H 1.08993 * 109.47586 * 179.97438 * 4 2 1 38 38 H 1.08001 * 126.18638 * 359.96428 * 6 5 2 39 39 H 0.97002 * 120.00212 * 0.02562 * 11 9 8 40 40 H 1.09007 * 109.46821 * 60.00505 * 12 11 9 41 41 H 1.08996 * 109.47722 * 300.00172 * 12 11 9 42 42 H 1.08996 * 109.47404 * 60.00468 * 13 12 11 43 43 H 1.09005 * 109.47092 * 300.00001 * 13 12 11 44 44 H 1.09002 * 111.00366 * 88.06052 * 16 14 13 45 45 H 1.09002 * 111.00429 * 324.25114 * 16 14 13 46 46 H 1.09000 * 110.36449 * 155.82966 * 17 16 14 47 47 H 1.09002 * 110.36579 * 278.03887 * 17 16 14 48 48 H 0.96996 * 120.00056 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.88531 * 120.47268 * 27 18 17 50 50 H 1.08998 * 109.88872 * 241.64988 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0142 -2.0221 1.3921 7 7 2.5334 -2.2507 2.5715 8 6 2.8504 -1.0574 3.1064 9 6 3.4625 -0.8339 4.4338 10 8 3.7089 0.2964 4.8068 11 7 3.7472 -1.8834 5.2300 12 6 4.3541 -1.6620 6.5448 13 6 4.5728 -3.0079 7.2388 14 6 5.2060 -2.7766 8.6122 15 1 6.0914 -2.1464 8.5287 16 6 5.5560 -4.1278 9.2900 17 6 5.5066 -3.7461 10.7905 18 7 4.3923 -2.7869 10.8995 19 6 3.6715 -2.5267 12.0343 20 1 2.8706 -1.8024 12.0111 21 6 3.9699 -3.1939 13.2144 22 7 4.9461 -4.0762 13.2428 23 14 2.9860 -2.8394 14.7622 24 1 1.5552 -3.1566 14.5228 25 1 3.4990 -3.6754 15.8772 26 1 3.1220 -1.4040 15.1173 27 6 4.1840 -2.1554 9.5883 28 7 2.5248 -0.1255 2.2375 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.6519 -2.7674 0.6996 39 1 3.5509 -2.7855 4.9321 40 1 3.6921 -1.0435 7.1510 41 1 5.3122 -1.1569 6.4224 42 1 5.2349 -3.6260 6.6325 43 1 3.6148 -3.5135 7.3612 44 1 6.5536 -4.4613 9.0043 45 1 4.8102 -4.8873 9.0553 46 1 5.3090 -4.6279 11.3999 47 1 6.4432 -3.2782 11.0939 48 1 5.1544 -4.5427 14.0674 49 1 3.1708 -2.3531 9.2384 50 1 4.3492 -1.0806 9.6640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714879675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:45 Heat of formation + Delta-G solvation = 47.177214 kcal Electronic energy + Delta-G solvation = -28231.208348 eV Core-core repulsion = 24294.926217 eV Total energy + Delta-G solvation = -3936.282131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54941 -40.70337 -39.38358 -38.22470 -36.55361 -34.81564 -33.67164 -32.61923 -31.92786 -30.66986 -28.56859 -28.40407 -28.25665 -26.79967 -25.37496 -24.02014 -23.41376 -21.97172 -21.71427 -21.10269 -20.73670 -18.91903 -18.87374 -17.66477 -17.51566 -17.17792 -17.01035 -16.60230 -16.15246 -15.84384 -15.52020 -15.18112 -15.10291 -14.92980 -14.69701 -14.25245 -13.81759 -13.79074 -13.51491 -13.34128 -13.30338 -13.24144 -13.10405 -13.02657 -12.81421 -12.76954 -12.66429 -12.39329 -12.25256 -12.02605 -12.00260 -11.78568 -11.69171 -11.48912 -11.42828 -11.42323 -11.35162 -11.17273 -10.72447 -10.63403 -10.16346 -8.86166 -7.76231 -5.20439 0.30012 1.08845 1.15041 1.45244 1.48942 1.55372 1.98669 2.23059 2.50260 3.06750 3.27472 3.32354 3.65884 3.74141 3.74795 3.77336 3.79899 3.88556 3.94122 4.18866 4.32930 4.35197 4.55001 4.58283 4.60497 4.64803 4.68718 4.70501 4.75554 4.78040 4.80452 4.90285 4.92059 5.02574 5.10461 5.11476 5.16385 5.19029 5.22023 5.26834 5.31484 5.36616 5.44914 5.53209 5.68061 5.71356 5.85291 6.32710 6.33869 6.93045 7.09514 7.12908 7.81019 8.45082 9.25200 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026352 B = 0.001730 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.287137 B =16182.977543 C =16584.960723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.287 5.287 6 C 0.202 3.798 7 N -0.501 5.501 8 C 0.113 3.887 9 C 0.609 3.391 10 O -0.566 6.566 11 N -0.692 5.692 12 C 0.124 3.876 13 C -0.099 4.099 14 C -0.083 4.083 15 H 0.081 0.919 16 C -0.122 4.122 17 C 0.149 3.851 18 N -0.629 5.629 19 C -0.242 4.242 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.133 3.867 28 N -0.275 5.275 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.272 0.728 39 H 0.420 0.580 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.072 0.928 47 H -0.017 1.017 48 H 0.247 0.753 49 H 0.026 0.974 50 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 2.375 -37.609 38.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.092 4.092 7 N -0.227 5.227 8 C -0.166 4.166 9 C 0.391 3.609 10 O -0.442 6.442 11 N -0.344 5.344 12 C 0.001 3.999 13 C -0.137 4.137 14 C -0.103 4.103 15 H 0.099 0.901 16 C -0.160 4.160 17 C 0.024 3.976 18 N -0.355 5.355 19 C -0.371 4.371 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.809 3.191 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.007 3.993 28 N -0.115 5.115 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.287 0.713 39 H 0.258 0.742 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.001 0.999 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.459 3.501 -36.837 37.747 hybrid contribution -0.421 0.043 1.248 1.318 sum -7.880 3.544 -35.589 36.623 Atomic orbital electron populations 1.22293 0.90163 1.04677 1.04309 1.21665 0.96438 0.93983 0.80266 1.22018 1.01485 0.93168 1.04018 1.22304 1.01965 1.02368 0.94679 1.48200 1.40094 1.06869 1.13173 1.27231 0.99404 0.86889 0.95690 1.71225 1.17647 1.25130 1.08726 1.23457 1.08284 0.86923 0.97894 1.16600 0.77729 0.84666 0.81857 1.90803 1.54671 1.24187 1.74545 1.45602 1.61838 1.09624 1.17357 1.21454 0.98102 0.98715 0.81630 1.21634 1.02308 0.95541 0.94249 1.22013 0.97792 0.97190 0.93278 0.90065 1.22882 1.01734 0.96276 0.95101 1.21763 0.87790 0.94013 0.94019 1.44851 1.37662 1.46733 1.06237 1.19421 1.11099 1.18707 0.87891 0.90624 1.25646 1.00105 0.99463 1.00898 1.70056 1.32990 1.30396 1.26330 0.85117 0.78094 0.77261 0.78643 1.20221 1.21610 1.20722 1.21595 0.97085 0.94834 0.85737 1.74230 1.14131 1.26522 0.96626 0.93677 0.86860 0.89836 0.92974 0.87222 0.93174 0.88960 0.86852 0.92345 0.71271 0.74184 0.92626 0.91128 0.88290 0.90693 0.89489 0.91373 0.91039 0.99854 0.94318 0.95630 0.97000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 8.72 71.98 0.63 0.05 16 2 C 0.16 1.11 1.23 3.60 0.00 1.12 16 3 C -0.15 -1.46 8.04 71.98 0.58 -0.88 16 4 C -0.16 -0.06 8.28 71.98 0.60 0.53 16 5 N -0.29 -4.40 3.17 -311.58 -0.99 -5.39 16 6 C 0.20 2.56 11.71 180.30 2.11 4.68 16 7 N -0.50 -10.52 11.09 -193.03 -2.14 -12.66 16 8 C 0.11 3.09 7.96 137.13 1.09 4.18 16 9 C 0.61 19.09 7.83 86.79 0.68 19.77 16 10 O -0.57 -22.14 17.09 -3.89 -0.07 -22.21 16 11 N -0.69 -17.76 5.55 -465.94 -2.59 -20.35 16 12 C 0.12 3.35 5.56 86.38 0.48 3.83 16 13 C -0.10 -2.47 4.73 30.60 0.14 -2.33 16 14 C -0.08 -2.77 2.93 -9.58 -0.03 -2.80 16 15 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 16 C -0.12 -4.44 6.53 31.99 0.21 -4.23 16 17 C 0.15 7.60 5.89 86.86 0.51 8.11 16 18 N -0.63 -34.13 3.39 -691.88 -2.35 -36.48 16 19 C -0.24 -14.30 10.27 84.03 0.86 -13.44 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 22 N -0.95 -58.19 10.09 21.65 0.22 -57.97 16 23 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 27 C 0.13 5.76 6.24 86.75 0.54 6.30 16 28 N -0.27 -7.04 11.09 -52.43 -0.58 -7.63 16 29 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.08 0.09 8.14 -2.38 -0.02 0.07 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.05 0.76 8.02 -2.39 -0.02 0.74 16 35 H 0.09 -0.32 7.34 -2.39 -0.02 -0.34 16 36 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 37 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.27 0.19 7.53 -2.91 -0.02 0.17 16 39 H 0.42 8.83 8.18 -92.71 -0.76 8.07 16 40 H 0.06 1.74 7.69 -2.38 -0.02 1.72 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.88 7.93 -2.38 -0.02 1.86 16 44 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.07 2.40 8.05 -2.39 -0.02 2.38 16 46 H 0.07 4.12 5.88 -2.39 -0.01 4.11 16 47 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.03 1.10 7.68 -2.39 -0.02 1.08 16 50 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -84.70 404.05 2.58 -82.12 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.17 Total: 9.86 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 8.88 Total: 21.30 kcal Atomic # 7 Polarization: -132.05 SS G_CDS: -8.43 Total: -140.47 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.07 Total: -22.21 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -84.70 2.58 -82.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714879675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.301 kcal (2) G-P(sol) polarization free energy of solvation -84.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds