Wall clock time and date at job start Tue Mar 31 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47269 * 2 1 4 4 N 1.46501 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59345 * 125.33820 * 4 3 2 6 6 C 1.36590 * 106.84272 * 180.15486 * 5 4 3 7 7 C 1.47519 * 125.77605 * 179.84307 * 6 5 4 8 8 O 1.21604 * 119.99896 * 353.32687 * 7 6 5 9 9 N 1.34775 * 120.00541 * 173.60240 * 7 6 5 10 10 C 1.46928 * 120.62985 * 3.88988 * 9 7 6 11 11 C 1.52755 * 109.01293 * 233.58545 * 10 9 7 12 12 C 1.53034 * 109.38421 * 305.59127 * 11 10 9 13 13 C 1.53001 * 109.45194 * 181.25151 * 12 11 10 14 14 C 1.53003 * 109.46989 * 64.93584 * 13 12 11 15 15 N 1.46499 * 109.46880 * 179.97438 * 14 13 12 16 16 C 1.36944 * 119.99832 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99773 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99720 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00417 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47208 * 60.00159 * 20 18 16 22 22 H 1.48499 * 109.47450 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47453 * 300.00182 * 20 18 16 24 24 C 1.53048 * 109.54093 * 61.23567 * 12 11 10 25 25 C 1.46922 * 120.63479 * 184.17251 * 9 7 6 26 26 N 1.34405 * 108.45723 * 359.57800 * 6 5 4 27 27 N 1.28761 * 109.52097 * 0.26524 * 26 6 5 28 28 H 1.08995 * 109.47702 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46951 * 300.00054 * 1 2 3 30 30 H 1.09007 * 109.46874 * 59.99084 * 1 2 3 31 31 H 1.09005 * 109.46865 * 240.00431 * 2 1 3 32 32 H 1.08997 * 109.47049 * 120.00911 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00862 * 3 2 1 34 34 H 1.08997 * 109.47829 * 300.00433 * 3 2 1 35 35 H 1.08002 * 126.58016 * 359.97438 * 5 4 3 36 36 H 1.09007 * 109.58271 * 353.42191 * 10 9 7 37 37 H 1.09000 * 109.58707 * 113.84248 * 10 9 7 38 38 H 1.08992 * 109.56760 * 185.55341 * 11 10 9 39 39 H 1.08999 * 109.35875 * 65.49824 * 11 10 9 40 40 H 1.09002 * 109.45870 * 301.21673 * 12 11 10 41 41 H 1.09000 * 109.46841 * 184.93503 * 13 12 11 42 42 H 1.08999 * 109.46955 * 304.93466 * 13 12 11 43 43 H 1.08995 * 109.46900 * 300.00295 * 14 13 12 44 44 H 1.08998 * 109.46849 * 60.00209 * 14 13 12 45 45 H 0.96996 * 120.00176 * 359.97438 * 15 14 13 46 46 H 0.97001 * 120.00294 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.49663 * 178.68972 * 24 12 11 48 48 H 1.08991 * 109.52154 * 58.60635 * 24 12 11 49 49 H 1.08994 * 109.58838 * 246.15554 * 25 9 7 50 50 H 1.09003 * 109.58343 * 6.43842 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.3092 2.0683 -0.8821 6 6 5.5945 1.7984 -0.5071 7 6 6.8110 2.2775 -1.1904 8 8 6.7202 2.8745 -2.2459 9 7 8.0233 2.0487 -0.6478 10 6 8.1559 1.2507 0.5788 11 6 8.9473 2.0521 1.6107 12 6 10.2795 2.4918 0.9994 13 6 11.0870 3.2680 2.0417 14 6 11.4578 2.3360 3.1970 15 7 12.2315 3.0790 4.1948 16 6 12.6770 2.4473 5.3252 17 1 12.4577 1.4014 5.4812 18 6 13.4096 3.1515 6.2708 19 7 13.6764 4.4263 6.0808 20 14 14.0167 2.2899 7.8130 21 1 14.9087 1.1651 7.4330 22 1 14.7686 3.2544 8.6555 23 1 12.8561 1.7651 8.5763 24 6 10.0156 3.3886 -0.2124 25 6 9.2368 2.5975 -1.2681 26 7 5.5637 1.0273 0.5934 27 7 4.3406 0.7963 0.9227 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.9969 2.6658 -1.7259 36 1 7.1663 1.0232 0.9754 37 1 8.6846 0.3238 0.3564 38 1 9.1361 1.4327 2.4873 39 1 8.3733 2.9315 1.9028 40 1 10.8424 1.6129 0.6849 41 1 11.9958 3.6562 1.5819 42 1 10.4891 4.0967 2.4210 43 1 10.5490 1.9477 3.6567 44 1 12.0557 1.5073 2.8177 45 1 12.4287 4.0183 4.0544 46 1 14.1880 4.9185 6.7418 47 1 10.9648 3.7202 -0.6332 48 1 9.4318 4.2557 0.0965 49 1 9.8554 1.7828 -1.6442 50 1 8.9604 3.2564 -2.0912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715178801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:09 Heat of formation + Delta-G solvation = 68.213180 kcal Electronic energy + Delta-G solvation = -28501.780569 eV Core-core repulsion = 24566.410626 eV Total energy + Delta-G solvation = -3935.369943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62902 -40.02549 -37.83683 -36.55067 -35.24598 -33.60560 -33.06350 -31.76472 -30.92479 -30.69085 -28.38615 -27.60846 -25.34732 -23.79530 -23.64550 -22.95834 -22.52912 -21.90745 -20.99820 -20.26809 -19.39451 -17.87524 -16.99704 -16.77213 -16.53949 -16.19071 -15.67995 -15.28763 -15.06207 -14.69037 -14.46820 -14.22070 -14.07336 -13.90836 -13.66119 -13.53557 -13.29904 -13.17594 -12.79314 -12.74601 -12.59754 -12.46085 -12.22432 -12.05447 -11.62127 -11.48448 -11.15649 -11.06247 -11.01701 -10.84651 -10.75368 -10.66518 -10.45829 -10.25388 -10.19443 -9.86131 -9.69661 -9.63568 -9.58260 -8.78528 -8.65743 -6.83308 -5.69495 -2.97528 0.77826 1.39989 1.59620 2.83087 3.08749 3.48777 3.52513 3.53986 3.73599 3.83225 4.07241 4.25803 4.40978 4.53662 4.60167 4.64331 4.68396 4.83571 4.88912 4.92694 5.00665 5.03204 5.13798 5.21397 5.31904 5.36863 5.40061 5.53263 5.57099 5.62174 5.64068 5.82406 5.84329 5.90426 5.94635 6.00991 6.10770 6.20625 6.24795 6.32661 6.48024 6.52530 6.59220 6.62819 6.98177 7.03379 7.25748 7.61077 7.76018 7.99611 8.49968 9.60440 10.20683 10.55002 11.53575 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002056 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.231646 B =13613.632078 C =15195.133323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.358 5.358 5 C 0.092 3.908 6 C -0.094 4.094 7 C 0.603 3.397 8 O -0.548 6.548 9 N -0.590 5.590 10 C 0.066 3.934 11 C -0.128 4.128 12 C -0.084 4.084 13 C -0.120 4.120 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.017 4.017 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.128 4.128 25 C 0.112 3.888 26 N -0.203 5.203 27 N -0.061 5.061 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.205 0.795 36 H 0.142 0.858 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.214 -6.425 -19.201 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.143 5.143 5 C -0.064 4.064 6 C -0.233 4.233 7 C 0.389 3.611 8 O -0.426 6.426 9 N -0.321 5.321 10 C -0.057 4.057 11 C -0.166 4.166 12 C -0.103 4.103 13 C -0.158 4.158 14 C 0.025 3.975 15 N -0.379 5.379 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.212 4.212 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.166 4.166 25 C -0.010 4.010 26 N -0.075 5.075 27 N -0.040 5.040 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.221 0.779 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.234 -7.114 -18.378 33.616 hybrid contribution 0.406 0.525 0.109 0.673 sum -26.828 -6.589 -18.269 33.120 Atomic orbital electron populations 1.21708 0.93750 1.02973 1.02391 1.21837 0.97054 0.94442 1.04324 1.22207 0.72358 1.00247 1.05313 1.50568 1.08887 1.34777 1.20082 1.23355 0.89997 0.97074 0.96009 1.21460 0.94581 1.08240 0.99061 1.16802 0.81669 0.78922 0.83718 1.90785 1.86321 1.43427 1.22058 1.47933 1.05462 1.51467 1.27233 1.22860 1.05958 0.93102 0.83758 1.21922 0.95673 1.00703 0.98275 1.21117 0.96010 0.98417 0.94775 1.21752 0.99278 0.98817 0.95939 1.20706 0.94136 0.93714 0.88969 1.42388 1.63886 1.10896 1.20694 1.19213 1.26857 0.94332 0.96449 0.91275 1.24742 1.01437 0.95964 0.99082 1.69653 1.44857 1.07532 1.36374 0.86261 0.78469 0.78250 0.83182 1.21318 1.21728 1.21304 1.21979 1.00252 0.98617 0.95775 1.21692 0.84928 0.98194 0.96211 1.74163 1.11884 1.11202 1.10250 1.82036 0.93635 1.16696 1.11669 0.91559 0.91993 0.92226 0.91013 0.89892 0.88148 0.87613 0.77871 0.84184 0.91651 0.89788 0.91861 0.91053 0.92031 0.92140 0.96182 0.96641 0.78396 0.93558 0.90527 0.91559 0.91283 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 9.91 37.16 0.37 0.07 16 2 C -0.14 -0.48 6.14 -26.73 -0.16 -0.64 16 3 C 0.12 0.39 6.54 -4.05 -0.03 0.37 16 4 N -0.36 -2.65 3.69 -61.06 -0.23 -2.87 16 5 C 0.09 0.74 11.28 -16.84 -0.19 0.55 16 6 C -0.09 -1.07 6.77 -83.55 -0.57 -1.63 16 7 C 0.60 7.83 7.69 -12.48 -0.10 7.74 16 8 O -0.55 -8.09 16.30 5.27 0.09 -8.00 16 9 N -0.59 -7.33 2.98 -174.26 -0.52 -7.85 16 10 C 0.07 0.80 6.28 -3.93 -0.02 0.78 16 11 C -0.13 -1.69 5.13 -26.84 -0.14 -1.82 16 12 C -0.08 -1.12 2.15 -90.58 -0.19 -1.32 16 13 C -0.12 -2.01 4.80 -26.73 -0.13 -2.14 16 14 C 0.15 3.17 6.02 -4.04 -0.02 3.15 16 15 N -0.73 -19.48 5.60 -59.91 -0.34 -19.82 16 16 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 19 N -0.94 -29.10 13.06 55.49 0.72 -28.37 16 20 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 C -0.13 -1.51 5.36 -26.61 -0.14 -1.66 16 25 C 0.11 1.28 6.42 -3.71 -0.02 1.25 16 26 N -0.20 -2.43 8.63 32.84 0.28 -2.14 16 27 N -0.06 -0.66 13.65 60.35 0.82 0.16 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.11 0.06 8.08 -51.93 -0.42 -0.36 16 35 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 1.75 3.61 -130.79 -0.47 1.28 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.17 6.50 -51.93 -0.34 0.83 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.42 6.53 -51.93 -0.34 0.08 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 46 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.06 7.03 -51.93 -0.36 0.70 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -35.42 400.52 -8.30 -43.72 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.56 Total: 4.11 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.60 Total: -2.95 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.75 Total: -60.89 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.42 -8.30 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715178801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.935 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds