Wall clock time and date at job start Tue Mar 31 2020 18:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47269 * 2 1 4 4 N 1.46501 * 109.47011 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59345 * 125.33820 * 4 3 2 6 6 C 1.36590 * 106.84272 * 180.15486 * 5 4 3 7 7 C 1.47519 * 125.77605 * 179.84307 * 6 5 4 8 8 O 1.21604 * 119.99896 * 353.32687 * 7 6 5 9 9 N 1.34775 * 120.00541 * 173.60240 * 7 6 5 10 10 C 1.46928 * 120.62985 * 3.88988 * 9 7 6 11 11 C 1.52755 * 109.01293 * 233.58545 * 10 9 7 12 12 C 1.53034 * 109.38421 * 305.59127 * 11 10 9 13 13 C 1.53001 * 109.45194 * 181.25151 * 12 11 10 14 14 C 1.53003 * 109.46989 * 64.93584 * 13 12 11 15 15 N 1.46499 * 109.46880 * 179.97438 * 14 13 12 16 16 C 1.36944 * 119.99832 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99773 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99720 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00417 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47208 * 60.00159 * 20 18 16 22 22 H 1.48499 * 109.47450 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47453 * 300.00182 * 20 18 16 24 24 C 1.53048 * 109.54093 * 61.23567 * 12 11 10 25 25 C 1.46922 * 120.63479 * 184.17251 * 9 7 6 26 26 N 1.34405 * 108.45723 * 359.57800 * 6 5 4 27 27 N 1.28761 * 109.52097 * 0.26524 * 26 6 5 28 28 H 1.08995 * 109.47702 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46951 * 300.00054 * 1 2 3 30 30 H 1.09007 * 109.46874 * 59.99084 * 1 2 3 31 31 H 1.09005 * 109.46865 * 240.00431 * 2 1 3 32 32 H 1.08997 * 109.47049 * 120.00911 * 2 1 3 33 33 H 1.09002 * 109.47082 * 60.00862 * 3 2 1 34 34 H 1.08997 * 109.47829 * 300.00433 * 3 2 1 35 35 H 1.08002 * 126.58016 * 359.97438 * 5 4 3 36 36 H 1.09007 * 109.58271 * 353.42191 * 10 9 7 37 37 H 1.09000 * 109.58707 * 113.84248 * 10 9 7 38 38 H 1.08992 * 109.56760 * 185.55341 * 11 10 9 39 39 H 1.08999 * 109.35875 * 65.49824 * 11 10 9 40 40 H 1.09002 * 109.45870 * 301.21673 * 12 11 10 41 41 H 1.09000 * 109.46841 * 184.93503 * 13 12 11 42 42 H 1.08999 * 109.46955 * 304.93466 * 13 12 11 43 43 H 1.08995 * 109.46900 * 300.00295 * 14 13 12 44 44 H 1.08998 * 109.46849 * 60.00209 * 14 13 12 45 45 H 0.96996 * 120.00176 * 359.97438 * 15 14 13 46 46 H 0.97001 * 120.00294 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.49663 * 178.68972 * 24 12 11 48 48 H 1.08991 * 109.52154 * 58.60635 * 24 12 11 49 49 H 1.08994 * 109.58838 * 246.15554 * 25 9 7 50 50 H 1.09003 * 109.58343 * 6.43842 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.3092 2.0683 -0.8821 6 6 5.5945 1.7984 -0.5071 7 6 6.8110 2.2775 -1.1904 8 8 6.7202 2.8745 -2.2459 9 7 8.0233 2.0487 -0.6478 10 6 8.1559 1.2507 0.5788 11 6 8.9473 2.0521 1.6107 12 6 10.2795 2.4918 0.9994 13 6 11.0870 3.2680 2.0417 14 6 11.4578 2.3360 3.1970 15 7 12.2315 3.0790 4.1948 16 6 12.6770 2.4473 5.3252 17 1 12.4577 1.4014 5.4812 18 6 13.4096 3.1515 6.2708 19 7 13.6764 4.4263 6.0808 20 14 14.0167 2.2899 7.8130 21 1 14.9087 1.1651 7.4330 22 1 14.7686 3.2544 8.6555 23 1 12.8561 1.7651 8.5763 24 6 10.0156 3.3886 -0.2124 25 6 9.2368 2.5975 -1.2681 26 7 5.5637 1.0273 0.5934 27 7 4.3406 0.7963 0.9227 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.9969 2.6658 -1.7259 36 1 7.1663 1.0232 0.9754 37 1 8.6846 0.3238 0.3564 38 1 9.1361 1.4327 2.4873 39 1 8.3733 2.9315 1.9028 40 1 10.8424 1.6129 0.6849 41 1 11.9958 3.6562 1.5819 42 1 10.4891 4.0967 2.4210 43 1 10.5490 1.9477 3.6567 44 1 12.0557 1.5073 2.8177 45 1 12.4287 4.0183 4.0544 46 1 14.1880 4.9185 6.7418 47 1 10.9648 3.7202 -0.6332 48 1 9.4318 4.2557 0.0965 49 1 9.8554 1.7828 -1.6442 50 1 8.9604 3.2564 -2.0912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715178801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:08 Heat of formation + Delta-G solvation = 45.286756 kcal Electronic energy + Delta-G solvation = -28502.774733 eV Core-core repulsion = 24566.410626 eV Total energy + Delta-G solvation = -3936.364107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.34241 -40.99629 -38.95389 -37.02840 -36.83076 -35.05659 -33.69013 -33.05772 -32.38916 -31.52954 -29.89820 -28.05967 -26.75912 -25.19979 -24.46297 -23.90832 -23.61400 -22.55684 -22.16493 -21.40224 -20.31116 -19.12143 -18.62222 -17.54741 -17.25738 -17.00201 -16.67079 -16.31973 -16.02890 -15.86420 -15.60196 -15.42803 -15.34661 -15.03860 -14.79522 -14.60738 -14.40022 -14.12715 -13.94494 -13.62347 -13.35461 -13.12903 -13.05802 -12.91717 -12.80442 -12.57343 -12.46832 -12.34140 -12.24606 -12.13133 -12.07751 -11.83760 -11.74637 -11.59106 -11.35463 -11.30507 -11.17805 -10.88575 -10.67196 -10.39742 -9.63760 -8.98782 -7.94830 -5.23990 0.13562 0.55080 1.08413 1.46644 1.50523 1.56630 1.93763 2.18406 2.56480 3.06310 3.30382 3.38251 3.65997 3.71205 3.82766 3.85375 3.91082 3.94270 4.13380 4.15943 4.20383 4.24291 4.34170 4.39370 4.44417 4.48350 4.58932 4.61363 4.64803 4.71811 4.79263 4.81873 4.90714 5.00861 5.04538 5.09351 5.11417 5.16389 5.21659 5.28748 5.31680 5.34533 5.44049 5.49038 5.49214 5.56700 5.70122 6.27666 6.30365 6.81480 7.07859 7.33091 8.10524 8.33495 9.28697 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002056 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.231646 B =13613.632078 C =15195.133323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.345 5.345 5 C 0.112 3.888 6 C -0.124 4.124 7 C 0.601 3.399 8 O -0.571 6.571 9 N -0.594 5.594 10 C 0.072 3.928 11 C -0.123 4.123 12 C -0.075 4.075 13 C -0.107 4.107 14 C 0.150 3.850 15 N -0.750 5.750 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.277 1.277 24 C -0.120 4.120 25 C 0.113 3.887 26 N -0.223 5.223 27 N -0.088 5.088 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.761 -7.069 -20.224 35.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.130 5.130 5 C -0.046 4.046 6 C -0.263 4.263 7 C 0.388 3.612 8 O -0.451 6.451 9 N -0.324 5.324 10 C -0.051 4.051 11 C -0.161 4.161 12 C -0.094 4.094 13 C -0.145 4.145 14 C 0.024 3.976 15 N -0.392 5.392 16 C -0.380 4.380 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.203 1.203 24 C -0.158 4.158 25 C -0.009 4.009 26 N -0.095 5.095 27 N -0.067 5.067 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.255 0.745 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.204 0.796 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.821 -7.809 -19.401 35.610 hybrid contribution 0.762 0.710 0.376 1.107 sum -28.060 -7.100 -19.026 34.637 Atomic orbital electron populations 1.21682 0.92360 1.03054 1.03297 1.21777 0.98124 0.94356 1.03006 1.22675 0.69901 1.00570 1.07722 1.50849 1.10099 1.33244 1.18796 1.23853 0.88884 0.95857 0.96022 1.21487 0.95239 1.09805 0.99814 1.17029 0.82195 0.78467 0.83505 1.90759 1.86717 1.44583 1.22992 1.48023 1.05810 1.51397 1.27190 1.22797 1.05866 0.93031 0.83368 1.21844 0.95622 1.00210 0.98401 1.21041 0.95498 0.98548 0.94335 1.21618 0.99556 0.98001 0.95289 1.20883 0.93347 0.94174 0.89149 1.42640 1.64482 1.10751 1.21331 1.19641 1.26361 0.94749 0.97274 0.90686 1.25623 1.02199 0.96765 1.02469 1.69819 1.45895 1.09031 1.37390 0.85169 0.78029 0.77179 0.79136 1.20266 1.21989 1.20346 1.21901 1.00902 0.97913 0.95131 1.21730 0.84738 0.98600 0.95809 1.74082 1.12718 1.11873 1.10842 1.81955 0.93767 1.17959 1.13042 0.91954 0.91571 0.90800 0.91639 0.91970 0.87003 0.83942 0.74495 0.84275 0.90767 0.90634 0.93082 0.90117 0.92117 0.93113 0.95955 0.96328 0.79623 0.93992 0.89150 0.92505 0.89779 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 9.91 71.98 0.71 0.41 16 2 C -0.13 -0.74 6.14 30.59 0.19 -0.56 16 3 C 0.11 0.45 6.54 86.38 0.56 1.01 16 4 N -0.35 -4.52 3.69 -347.11 -1.28 -5.81 16 5 C 0.11 1.56 11.28 83.85 0.95 2.51 16 6 C -0.12 -2.70 6.77 40.81 0.28 -2.43 16 7 C 0.60 15.21 7.69 86.69 0.67 15.88 16 8 O -0.57 -16.34 16.30 -4.04 -0.07 -16.41 16 9 N -0.59 -14.31 2.98 -823.51 -2.45 -16.76 16 10 C 0.07 1.72 6.28 86.22 0.54 2.26 16 11 C -0.12 -3.21 5.13 30.52 0.16 -3.06 16 12 C -0.08 -1.94 2.15 -10.77 -0.02 -1.97 16 13 C -0.11 -3.55 4.80 30.60 0.15 -3.40 16 14 C 0.15 6.27 6.02 86.38 0.52 6.79 16 15 N -0.75 -40.17 5.60 -343.45 -1.92 -42.09 16 16 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 19 N -0.97 -61.18 13.06 21.65 0.28 -60.89 16 20 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 C -0.12 -2.70 5.36 30.67 0.16 -2.54 16 25 C 0.11 2.43 6.42 86.36 0.55 2.99 16 26 N -0.22 -5.33 8.63 -50.00 -0.43 -5.76 16 27 N -0.09 -1.87 13.65 37.02 0.51 -1.37 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.07 -0.04 8.14 -2.38 -0.02 -0.05 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.14 -0.41 8.08 -2.39 -0.02 -0.43 16 35 H 0.24 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.14 3.50 3.61 -104.43 -0.38 3.12 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.09 6.50 -2.39 -0.02 2.08 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 0.94 6.53 -2.39 -0.02 0.92 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.37 21.13 7.67 -92.71 -0.71 20.42 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 47 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.09 1.99 7.03 -2.39 -0.02 1.97 16 Total: -1.00 -76.87 400.52 3.24 -73.63 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.14 Total: 26.02 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.72 Total: 0.06 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -5.30 Total: -132.67 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.07 Total: -16.41 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.87 3.24 -73.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715178801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.922 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds