Wall clock time and date at job start Tue Mar 31 2020 19:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47359 * 2 1 4 4 N 1.46497 * 109.47294 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59530 * 124.71214 * 4 3 2 6 6 C 1.36597 * 106.84254 * 179.85504 * 5 4 3 7 7 C 1.47523 * 125.77275 * 180.18397 * 6 5 4 8 8 O 1.21592 * 120.00203 * 0.29856 * 7 6 5 9 9 N 1.34781 * 119.99829 * 180.30081 * 7 6 5 10 10 C 1.46501 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.53035 * 109.46368 * 295.03076 * 12 11 10 14 14 C 1.53189 * 109.31508 * 178.59764 * 13 12 11 15 15 N 1.46930 * 108.76061 * 54.65454 * 14 13 12 16 16 C 1.36938 * 120.62770 * 126.40523 * 15 14 13 17 17 H 1.08001 * 120.00109 * 331.82848 * 16 15 14 18 18 C 1.38812 * 119.99700 * 151.82924 * 16 15 14 19 19 N 1.31613 * 120.00400 * 343.06598 * 18 16 15 20 20 Si 1.86801 * 119.99754 * 163.07269 * 18 16 15 21 21 H 1.48503 * 109.47468 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47410 * 119.99846 * 20 18 16 23 23 H 1.48507 * 109.47174 * 239.99619 * 20 18 16 24 24 C 1.46925 * 118.74075 * 306.38494 * 15 14 13 25 25 C 1.53038 * 109.45834 * 174.97536 * 12 11 10 26 26 N 1.34400 * 108.45393 * 0.41813 * 6 5 4 27 27 N 1.28755 * 109.52888 * 359.74121 * 26 6 5 28 28 H 1.08996 * 109.47025 * 299.99889 * 1 2 3 29 29 H 1.09000 * 109.47418 * 59.99812 * 1 2 3 30 30 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46932 * 120.00396 * 2 1 3 32 32 H 1.09004 * 109.47108 * 239.99782 * 2 1 3 33 33 H 1.09000 * 109.47009 * 300.00439 * 3 2 1 34 34 H 1.08996 * 109.46961 * 60.00072 * 3 2 1 35 35 H 1.08004 * 126.57917 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00084 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47115 * 300.00173 * 10 9 7 38 38 H 1.09004 * 109.46787 * 59.99980 * 10 9 7 39 39 H 1.08998 * 109.47394 * 300.00192 * 11 10 9 40 40 H 1.09006 * 109.46400 * 60.00530 * 11 10 9 41 41 H 1.09001 * 109.45515 * 55.00834 * 12 11 10 42 42 H 1.08995 * 109.49859 * 298.57003 * 13 12 11 43 43 H 1.09005 * 109.49874 * 58.66446 * 13 12 11 44 44 H 1.08999 * 109.59895 * 294.87144 * 14 13 12 45 45 H 1.08996 * 109.70447 * 174.50240 * 14 13 12 46 46 H 0.96998 * 120.00675 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.58701 * 293.81742 * 24 15 14 48 48 H 1.08999 * 109.70117 * 173.46309 * 24 15 14 49 49 H 1.09007 * 109.49775 * 301.34453 * 25 12 11 50 50 H 1.09004 * 109.49596 * 61.43566 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3083 2.0589 -0.8906 6 6 5.5941 1.7987 -0.5098 7 6 6.8099 2.2784 -1.1938 8 8 6.7147 2.9746 -2.1861 9 7 8.0264 1.9450 -0.7187 10 6 9.2338 2.4209 -1.3983 11 6 10.4711 1.9045 -0.6611 12 6 11.7321 2.4010 -1.3712 13 6 11.8062 1.7841 -2.7697 14 6 13.0512 2.3106 -3.4905 15 7 14.2289 2.0482 -2.6522 16 6 15.3102 1.3776 -3.1586 17 1 15.1768 0.6621 -3.9564 18 6 16.5779 1.6177 -2.6463 19 7 16.8043 2.6979 -1.9294 20 14 17.9625 0.4075 -2.9748 21 1 17.4521 -0.7167 -3.7999 22 1 19.0601 1.0961 -3.7002 23 1 18.4759 -0.1192 -1.6847 24 6 14.2247 2.5191 -1.2605 25 6 12.9663 1.9905 -0.5650 26 7 5.5641 1.0273 0.5904 27 7 4.3413 0.7961 0.9208 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9953 2.6474 -1.7404 36 1 8.1024 1.3898 0.0731 37 1 9.2420 2.0534 -2.4244 38 1 9.2425 3.5109 -1.4026 39 1 10.4627 2.2723 0.3649 40 1 10.4625 0.8144 -0.6565 41 1 11.6978 3.4873 -1.4548 42 1 11.8656 0.6990 -2.6860 43 1 10.9156 2.0575 -3.3357 44 1 12.9518 3.3835 -3.6554 45 1 13.1638 1.8026 -4.4482 46 1 17.6900 2.8655 -1.5711 47 1 14.2211 3.6090 -1.2436 48 1 15.1104 2.1486 -0.7445 49 1 12.9016 2.4108 0.4387 50 1 13.0148 0.9033 -0.5022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715205782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:01 Heat of formation + Delta-G solvation = 57.323606 kcal Electronic energy + Delta-G solvation = -27867.577781 eV Core-core repulsion = 23931.735630 eV Total energy + Delta-G solvation = -3935.842150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57049 -39.52959 -37.92090 -36.53662 -35.39088 -33.57592 -33.08586 -31.51317 -30.98261 -29.89094 -28.57950 -27.53503 -25.32895 -23.88544 -23.32986 -22.70209 -22.04959 -21.81028 -20.81167 -20.31388 -19.01751 -18.36566 -16.75018 -16.70410 -16.52853 -16.07319 -15.74788 -15.30380 -15.06140 -14.77449 -14.32942 -14.21801 -13.96623 -13.71330 -13.43090 -13.37221 -13.22042 -12.78060 -12.76147 -12.57651 -12.48949 -12.17899 -12.15978 -11.75569 -11.51950 -11.44150 -11.27969 -11.15177 -10.84056 -10.76145 -10.66465 -10.44182 -10.28543 -10.09142 -10.07065 -9.80127 -9.67120 -9.39429 -9.31975 -9.04704 -8.40825 -6.58634 -5.72542 -3.14538 0.75980 1.42125 1.58210 3.01822 3.11432 3.40704 3.48555 3.50991 3.72483 3.87243 4.04226 4.30945 4.42318 4.52339 4.55102 4.61275 4.67756 4.86178 4.98403 5.01978 5.13349 5.29276 5.30454 5.37039 5.44999 5.46661 5.51020 5.52986 5.67886 5.81610 5.86800 5.93084 6.09880 6.11748 6.20575 6.29718 6.40608 6.45796 6.63419 6.72236 6.79219 6.91214 6.94645 7.09920 7.31135 7.46271 7.62861 7.74022 7.85937 8.04441 8.52196 9.28586 9.92546 10.49772 11.35841 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.001575 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.515807 B =17774.034885 C =17855.264913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.361 5.361 5 C 0.093 3.907 6 C -0.101 4.101 7 C 0.602 3.398 8 O -0.540 6.540 9 N -0.712 5.712 10 C 0.117 3.883 11 C -0.126 4.126 12 C -0.074 4.074 13 C -0.130 4.130 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.249 4.249 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.171 3.829 25 C -0.134 4.134 26 N -0.205 5.205 27 N -0.063 5.063 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.205 0.795 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.016 0.984 45 H 0.051 0.949 46 H 0.252 0.748 47 H 0.016 0.984 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.247 -2.162 5.469 33.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.146 5.146 5 C -0.064 4.064 6 C -0.240 4.240 7 C 0.385 3.615 8 O -0.417 6.417 9 N -0.363 5.363 10 C -0.005 4.005 11 C -0.164 4.164 12 C -0.093 4.093 13 C -0.169 4.169 14 C 0.018 3.982 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.045 3.955 25 C -0.174 4.174 26 N -0.079 5.079 27 N -0.044 5.044 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.222 0.778 36 H 0.243 0.757 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -33.111 -2.478 6.057 33.752 hybrid contribution 0.565 -0.185 -0.579 0.829 sum -32.547 -2.662 5.478 33.112 Atomic orbital electron populations 1.21706 0.93744 1.02982 1.02382 1.21841 0.97057 0.94471 1.04313 1.22188 0.72395 1.00210 1.05268 1.50582 1.08898 1.35225 1.19911 1.23410 0.90161 0.96995 0.95830 1.21530 0.94670 1.08547 0.99262 1.16749 0.81829 0.79799 0.83093 1.90822 1.86688 1.38562 1.25601 1.45889 1.05319 1.53185 1.31858 1.21611 0.82341 0.99619 0.96969 1.21919 0.93678 1.01356 0.99446 1.20969 0.93023 0.99834 0.95522 1.22122 0.98734 1.00427 0.95629 1.20902 0.87006 0.96706 0.93589 1.44063 1.14344 1.66137 1.07036 1.19242 0.85186 1.15138 1.18338 0.91754 1.25031 0.97100 0.96608 1.01013 1.70041 1.21147 1.24306 1.39347 0.86255 0.82301 0.80915 0.77504 1.20293 1.21791 1.21624 1.20754 0.94566 0.95527 0.84656 1.22222 0.96775 1.00805 0.97558 1.74644 1.13005 1.09983 1.10239 1.81978 0.93321 1.17168 1.11897 0.92044 0.92180 0.91555 0.89974 0.90973 0.87606 0.88227 0.77832 0.75727 0.90707 0.91233 0.91623 0.91439 0.91663 0.92412 0.93049 0.96592 0.93016 0.93778 0.96579 0.89642 0.93428 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.91 37.16 0.37 0.12 16 2 C -0.14 -0.45 6.14 -26.73 -0.16 -0.61 16 3 C 0.12 0.36 6.54 -4.04 -0.03 0.33 16 4 N -0.36 -2.58 3.69 -61.07 -0.23 -2.81 16 5 C 0.09 0.73 11.27 -16.84 -0.19 0.54 16 6 C -0.10 -1.10 6.99 -83.55 -0.58 -1.69 16 7 C 0.60 7.70 7.82 -12.47 -0.10 7.61 16 8 O -0.54 -8.28 16.86 5.28 0.09 -8.19 16 9 N -0.71 -8.44 5.55 -61.35 -0.34 -8.78 16 10 C 0.12 1.48 5.43 -4.04 -0.02 1.46 16 11 C -0.13 -1.62 4.80 -26.73 -0.13 -1.75 16 12 C -0.07 -1.21 2.15 -90.58 -0.19 -1.40 16 13 C -0.13 -2.26 5.14 -26.62 -0.14 -2.40 16 14 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 15 N -0.59 -15.12 2.99 -172.32 -0.52 -15.63 16 16 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 17 H 0.06 1.78 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 20 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 25 C -0.13 -2.54 5.36 -26.61 -0.14 -2.68 16 26 N -0.20 -2.38 12.04 32.85 0.40 -1.99 16 27 N -0.06 -0.66 13.65 60.35 0.82 0.16 16 28 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 0.05 8.08 -51.93 -0.42 -0.37 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.20 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.41 4.28 8.16 -40.82 -0.33 3.95 16 37 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 404.42 15.07 6.09 6.09 Total: -1.00 -33.97 404.42 -8.15 -42.12 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.47 Total: -1.45 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.59 Total: -0.48 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.76 Total: -55.05 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.97 -8.15 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715205782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.444 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds