Wall clock time and date at job start Tue Mar 31 2020 19:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47359 * 2 1 4 4 N 1.46497 * 109.47294 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59530 * 124.71214 * 4 3 2 6 6 C 1.36597 * 106.84254 * 179.85504 * 5 4 3 7 7 C 1.47523 * 125.77275 * 180.18397 * 6 5 4 8 8 O 1.21592 * 120.00203 * 0.29856 * 7 6 5 9 9 N 1.34781 * 119.99829 * 180.30081 * 7 6 5 10 10 C 1.46501 * 119.99983 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46970 * 179.97438 * 11 10 9 13 13 C 1.53035 * 109.46368 * 295.03076 * 12 11 10 14 14 C 1.53189 * 109.31508 * 178.59764 * 13 12 11 15 15 N 1.46930 * 108.76061 * 54.65454 * 14 13 12 16 16 C 1.36938 * 120.62770 * 126.40523 * 15 14 13 17 17 H 1.08001 * 120.00109 * 331.82848 * 16 15 14 18 18 C 1.38812 * 119.99700 * 151.82924 * 16 15 14 19 19 N 1.31613 * 120.00400 * 343.06598 * 18 16 15 20 20 Si 1.86801 * 119.99754 * 163.07269 * 18 16 15 21 21 H 1.48503 * 109.47468 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47410 * 119.99846 * 20 18 16 23 23 H 1.48507 * 109.47174 * 239.99619 * 20 18 16 24 24 C 1.46925 * 118.74075 * 306.38494 * 15 14 13 25 25 C 1.53038 * 109.45834 * 174.97536 * 12 11 10 26 26 N 1.34400 * 108.45393 * 0.41813 * 6 5 4 27 27 N 1.28755 * 109.52888 * 359.74121 * 26 6 5 28 28 H 1.08996 * 109.47025 * 299.99889 * 1 2 3 29 29 H 1.09000 * 109.47418 * 59.99812 * 1 2 3 30 30 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46932 * 120.00396 * 2 1 3 32 32 H 1.09004 * 109.47108 * 239.99782 * 2 1 3 33 33 H 1.09000 * 109.47009 * 300.00439 * 3 2 1 34 34 H 1.08996 * 109.46961 * 60.00072 * 3 2 1 35 35 H 1.08004 * 126.57917 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00084 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47115 * 300.00173 * 10 9 7 38 38 H 1.09004 * 109.46787 * 59.99980 * 10 9 7 39 39 H 1.08998 * 109.47394 * 300.00192 * 11 10 9 40 40 H 1.09006 * 109.46400 * 60.00530 * 11 10 9 41 41 H 1.09001 * 109.45515 * 55.00834 * 12 11 10 42 42 H 1.08995 * 109.49859 * 298.57003 * 13 12 11 43 43 H 1.09005 * 109.49874 * 58.66446 * 13 12 11 44 44 H 1.08999 * 109.59895 * 294.87144 * 14 13 12 45 45 H 1.08996 * 109.70447 * 174.50240 * 14 13 12 46 46 H 0.96998 * 120.00675 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.58701 * 293.81742 * 24 15 14 48 48 H 1.08999 * 109.70117 * 173.46309 * 24 15 14 49 49 H 1.09007 * 109.49775 * 301.34453 * 25 12 11 50 50 H 1.09004 * 109.49596 * 61.43566 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3083 2.0589 -0.8906 6 6 5.5941 1.7987 -0.5098 7 6 6.8099 2.2784 -1.1938 8 8 6.7147 2.9746 -2.1861 9 7 8.0264 1.9450 -0.7187 10 6 9.2338 2.4209 -1.3983 11 6 10.4711 1.9045 -0.6611 12 6 11.7321 2.4010 -1.3712 13 6 11.8062 1.7841 -2.7697 14 6 13.0512 2.3106 -3.4905 15 7 14.2289 2.0482 -2.6522 16 6 15.3102 1.3776 -3.1586 17 1 15.1768 0.6621 -3.9564 18 6 16.5779 1.6177 -2.6463 19 7 16.8043 2.6979 -1.9294 20 14 17.9625 0.4075 -2.9748 21 1 17.4521 -0.7167 -3.7999 22 1 19.0601 1.0961 -3.7002 23 1 18.4759 -0.1192 -1.6847 24 6 14.2247 2.5191 -1.2605 25 6 12.9663 1.9905 -0.5650 26 7 5.5641 1.0273 0.5904 27 7 4.3413 0.7961 0.9208 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9953 2.6474 -1.7404 36 1 8.1024 1.3898 0.0731 37 1 9.2420 2.0534 -2.4244 38 1 9.2425 3.5109 -1.4026 39 1 10.4627 2.2723 0.3649 40 1 10.4625 0.8144 -0.6565 41 1 11.6978 3.4873 -1.4548 42 1 11.8656 0.6990 -2.6860 43 1 10.9156 2.0575 -3.3357 44 1 12.9518 3.3835 -3.6554 45 1 13.1638 1.8026 -4.4482 46 1 17.6900 2.8655 -1.5711 47 1 14.2211 3.6090 -1.2436 48 1 15.1104 2.1486 -0.7445 49 1 12.9016 2.4108 0.4387 50 1 13.0148 0.9033 -0.5022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715205782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:00 Heat of formation + Delta-G solvation = 34.826192 kcal Electronic energy + Delta-G solvation = -27868.553342 eV Core-core repulsion = 23931.735630 eV Total energy + Delta-G solvation = -3936.817711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.24686 -40.52336 -39.45170 -36.92806 -36.70755 -35.07381 -33.61834 -33.05106 -32.02627 -31.50759 -29.97239 -28.00802 -26.90908 -25.11632 -24.20090 -23.72958 -23.28205 -22.49515 -22.12470 -21.26820 -20.57955 -19.09115 -18.68116 -17.25718 -17.22372 -17.10705 -16.81102 -16.44738 -15.94910 -15.75773 -15.63036 -15.27412 -15.22893 -15.04755 -14.82571 -14.43325 -14.32297 -13.94719 -13.82465 -13.63615 -13.21232 -13.01023 -12.96920 -12.92986 -12.81344 -12.55906 -12.51475 -12.26176 -12.22484 -12.12162 -11.90769 -11.78472 -11.75189 -11.53883 -11.29312 -11.28266 -10.96874 -10.95930 -10.52124 -10.43422 -10.01552 -8.64551 -7.85507 -5.30978 0.14229 0.59838 1.09611 1.45926 1.47580 1.58472 2.12753 2.22528 2.52284 3.17292 3.28507 3.35282 3.74460 3.79928 3.82836 3.86322 3.94789 3.96426 4.15459 4.16516 4.22784 4.33646 4.44968 4.46979 4.52997 4.61717 4.67664 4.72258 4.78402 4.80095 4.83320 4.92618 5.06104 5.07156 5.11571 5.13515 5.17267 5.30206 5.32348 5.38192 5.41571 5.43825 5.49179 5.49619 5.58911 5.69362 5.83491 6.41383 6.41536 6.88841 7.12404 7.17453 7.89870 8.41364 9.20571 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.001575 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.515807 B =17774.034885 C =17855.264913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.110 3.890 6 C -0.126 4.126 7 C 0.602 3.398 8 O -0.570 6.570 9 N -0.707 5.707 10 C 0.124 3.876 11 C -0.110 4.110 12 C -0.069 4.069 13 C -0.118 4.118 14 C 0.138 3.862 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.064 0.936 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.175 3.825 25 C -0.122 4.122 26 N -0.225 5.225 27 N -0.088 5.088 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.415 0.585 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.011 0.989 45 H 0.049 0.951 46 H 0.249 0.751 47 H -0.007 1.007 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.040 -2.648 5.439 36.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.048 4.048 6 C -0.266 4.266 7 C 0.387 3.613 8 O -0.449 6.449 9 N -0.358 5.358 10 C 0.001 3.999 11 C -0.148 4.148 12 C -0.088 4.088 13 C -0.156 4.156 14 C 0.012 3.988 15 N -0.335 5.335 16 C -0.393 4.393 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.216 1.216 24 C 0.049 3.951 25 C -0.161 4.161 26 N -0.099 5.099 27 N -0.068 5.068 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.251 0.749 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.029 0.971 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.011 0.989 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -35.953 -2.995 6.053 36.582 hybrid contribution 1.331 0.007 -0.611 1.465 sum -34.622 -2.988 5.442 35.174 Atomic orbital electron populations 1.21680 0.92341 1.03045 1.03324 1.21782 0.98147 0.94423 1.02954 1.22658 0.69936 1.00491 1.07733 1.50865 1.10119 1.33668 1.18622 1.23883 0.89168 0.95868 0.95916 1.21466 0.95113 1.10065 0.99995 1.16959 0.82416 0.79202 0.82696 1.90797 1.87170 1.40021 1.26931 1.45811 1.04984 1.53024 1.31933 1.21447 0.82559 0.99311 0.96611 1.21713 0.91714 1.01693 0.99702 1.20873 0.93469 0.99692 0.94770 1.21980 0.97430 1.00042 0.96193 1.21084 0.87435 0.96564 0.93688 1.44346 1.14933 1.66188 1.08075 1.19566 0.86260 1.15210 1.18221 0.91810 1.25791 0.99390 0.98172 1.01329 1.70195 1.21412 1.25997 1.40633 0.85227 0.79149 0.78943 0.77256 1.19140 1.21909 1.21583 1.20598 0.95854 0.94068 0.84549 1.22028 0.95270 1.00360 0.98415 1.74608 1.13846 1.10604 1.10802 1.81901 0.93439 1.18288 1.13186 0.91401 0.90907 0.91996 0.91874 0.91857 0.84140 0.86781 0.74691 0.74900 0.91380 0.91668 0.90067 0.90687 0.91907 0.92658 0.90402 0.97131 0.93258 0.94163 0.98902 0.93167 0.91298 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.18 9.91 71.98 0.71 0.53 16 2 C -0.13 -0.64 6.14 30.59 0.19 -0.46 16 3 C 0.11 0.35 6.54 86.38 0.56 0.91 16 4 N -0.35 -4.24 3.69 -347.11 -1.28 -5.52 16 5 C 0.11 1.47 11.27 83.85 0.95 2.41 16 6 C -0.13 -2.60 6.99 40.82 0.29 -2.32 16 7 C 0.60 14.67 7.82 86.69 0.68 15.35 16 8 O -0.57 -16.78 16.86 -4.01 -0.07 -16.84 16 9 N -0.71 -15.65 5.55 -466.27 -2.59 -18.24 16 10 C 0.12 2.89 5.43 86.38 0.47 3.36 16 11 C -0.11 -2.56 4.80 30.59 0.15 -2.42 16 12 C -0.07 -2.13 2.15 -10.77 -0.02 -2.15 16 13 C -0.12 -3.92 5.14 30.67 0.16 -3.76 16 14 C 0.14 5.90 6.52 86.36 0.56 6.46 16 15 N -0.61 -31.72 2.99 -699.11 -2.09 -33.81 16 16 C -0.26 -14.90 9.58 84.03 0.81 -14.09 16 17 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 18 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 19 N -0.94 -56.77 11.19 21.65 0.24 -56.53 16 20 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.17 8.64 5.30 86.36 0.46 9.09 16 25 C -0.12 -4.49 5.36 30.67 0.16 -4.33 16 26 N -0.23 -5.05 12.04 -49.99 -0.60 -5.66 16 27 N -0.09 -1.75 13.65 37.02 0.51 -1.24 16 28 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 29 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.14 -0.47 8.08 -2.39 -0.02 -0.49 16 34 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.24 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.41 8.05 8.16 -92.71 -0.76 7.30 16 37 H 0.07 1.70 6.53 -2.39 -0.02 1.68 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.21 6.50 -2.38 -0.02 2.19 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 49 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.83 404.42 2.85 -72.98 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.17 Total: 10.89 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.53 Total: 6.05 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -5.82 Total: -121.00 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.07 Total: -16.84 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.83 2.85 -72.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715205782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.803 kcal (2) G-P(sol) polarization free energy of solvation -75.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds