Wall clock time and date at job start Tue Mar 31 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.52994 * 109.47534 * 239.99552 * 2 1 3 5 5 N 1.46502 * 109.46938 * 119.99628 * 2 1 3 6 6 C 1.34816 * 126.59529 * 75.00450 * 5 2 1 7 7 C 1.36592 * 106.84453 * 180.02562 * 6 5 2 8 8 C 1.47523 * 125.77464 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99896 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00033 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99914 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.81544 * 31.66301 * 11 10 8 13 13 C 1.55030 * 110.87608 * 268.31822 * 11 10 8 14 14 C 1.54269 * 104.28030 * 203.89970 * 13 11 10 15 15 C 1.53875 * 106.59701 * 23.51721 * 14 13 11 16 16 C 1.54260 * 106.60118 * 359.97438 * 15 14 13 17 17 H 1.09003 * 110.48363 * 95.20604 * 16 15 14 18 18 C 1.53004 * 110.49056 * 217.71334 * 16 15 14 19 19 N 1.46504 * 109.46932 * 291.76188 * 18 16 15 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46986 * 270.00112 * 24 22 20 26 26 H 1.48496 * 109.47029 * 30.00128 * 24 22 20 27 27 H 1.48499 * 109.47352 * 149.99958 * 24 22 20 28 28 N 1.34405 * 108.45801 * 0.23809 * 7 6 5 29 29 N 1.28766 * 109.51939 * 359.59124 * 28 7 6 30 30 H 1.08999 * 109.47133 * 299.99990 * 1 2 3 31 31 H 1.08996 * 109.46966 * 60.00315 * 1 2 3 32 32 H 1.08998 * 109.47005 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47777 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47248 * 299.99841 * 3 2 1 35 35 H 1.09002 * 109.47474 * 59.99742 * 3 2 1 36 36 H 1.09003 * 109.47415 * 300.00689 * 4 2 1 37 37 H 1.09002 * 109.46617 * 60.00425 * 4 2 1 38 38 H 1.09002 * 109.47683 * 180.02562 * 4 2 1 39 39 H 1.08005 * 126.57632 * 0.05002 * 6 5 2 40 40 H 0.96997 * 119.99930 * 359.97438 * 10 8 7 41 41 H 1.08996 * 110.52317 * 85.15388 * 13 11 10 42 42 H 1.08997 * 110.47400 * 322.61936 * 13 11 10 43 43 H 1.09005 * 110.03070 * 264.23254 * 14 13 11 44 44 H 1.08998 * 110.03310 * 142.79973 * 14 13 11 45 45 H 1.09008 * 110.03199 * 240.71455 * 15 14 13 46 46 H 1.08997 * 110.07518 * 119.31277 * 15 14 13 47 47 H 1.08998 * 109.47524 * 171.75832 * 18 16 15 48 48 H 1.08997 * 109.47093 * 51.75733 * 18 16 15 49 49 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 50 50 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 6 2.0221 -2.0215 1.4106 7 6 2.5627 -2.2214 2.6490 8 6 2.7636 -3.5292 3.3015 9 8 2.4357 -4.5508 2.7294 10 7 3.3107 -3.5916 4.5316 11 6 3.5097 -4.8902 5.1798 12 1 3.7109 -5.6654 4.4403 13 6 2.2828 -5.2676 6.0491 14 6 2.8454 -6.2537 7.0936 15 6 4.3530 -5.9656 7.2028 16 6 4.6541 -4.8149 6.2205 17 1 4.6352 -3.8562 6.7388 18 6 6.0093 -5.0294 5.5435 19 7 7.0789 -4.8784 6.5331 20 6 8.3867 -5.0279 6.1559 21 1 8.6298 -5.2576 5.1290 22 6 9.4002 -4.8843 7.0935 23 7 9.1042 -4.6039 8.3450 24 14 11.1844 -5.0890 6.5791 25 1 11.5835 -6.5111 6.7319 26 1 11.3403 -4.6808 5.1599 27 1 12.0476 -4.2377 7.4367 28 7 2.8752 -1.0247 3.1751 29 7 2.5710 -0.0943 2.3386 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1391 38 1 3.1301 -0.7217 -1.2489 39 1 1.6664 -2.7836 0.7330 40 1 3.5726 -2.7766 4.9878 41 1 1.5179 -5.7508 5.4414 42 1 1.8766 -4.3830 6.5397 43 1 2.6843 -7.2799 6.7630 44 1 2.3635 -6.0916 8.0577 45 1 4.9236 -6.8519 6.9252 46 1 4.6036 -5.6641 8.2198 47 1 6.1405 -4.2924 4.7513 48 1 6.0478 -6.0318 5.1171 49 1 6.8606 -4.6725 7.4556 50 1 8.1777 -4.4980 8.6121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716062013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:08 Heat of formation + Delta-G solvation = 51.810923 kcal Electronic energy + Delta-G solvation = -28962.142233 eV Core-core repulsion = 25026.061035 eV Total energy + Delta-G solvation = -3936.081198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49145 -39.76351 -38.04476 -37.64564 -34.67444 -33.65877 -32.26203 -31.38265 -31.05636 -28.33820 -28.18205 -28.12057 -27.51084 -24.39047 -23.96828 -23.37688 -22.26543 -21.05254 -20.43602 -20.28445 -19.35033 -17.84263 -17.20537 -16.51596 -16.49274 -16.33917 -15.23877 -15.05230 -14.87455 -14.83114 -14.50381 -14.20442 -14.08801 -13.64437 -13.42180 -13.27435 -13.18894 -13.10661 -13.06247 -12.87023 -12.52740 -12.41636 -12.22669 -12.04755 -11.95811 -11.71198 -11.37973 -11.08134 -10.96580 -10.71144 -10.61971 -10.59226 -10.47028 -10.36960 -10.12495 -10.06756 -9.96117 -9.50024 -9.14531 -8.86499 -8.80753 -6.92249 -6.03992 -3.02572 0.93590 1.59708 1.68089 3.14257 3.26701 3.55905 3.61201 3.74134 3.75096 4.00043 4.01922 4.12607 4.46249 4.63240 4.68216 4.77767 4.79377 4.82820 4.85314 4.94948 4.96936 5.01932 5.06628 5.13764 5.16286 5.34113 5.44402 5.47370 5.51267 5.59456 5.63917 5.68431 5.72506 5.74708 5.81952 5.92824 6.05956 6.11141 6.15657 6.25476 6.30105 6.45876 6.55588 6.60142 6.79435 6.90663 7.48747 7.81814 7.88431 8.19920 8.82945 9.30817 10.17104 10.32706 11.45008 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.002534 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.868152 B =11047.355531 C =12709.572774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.150 4.150 4 C -0.164 4.164 5 N -0.352 5.352 6 C 0.092 3.908 7 C -0.100 4.100 8 C 0.606 3.394 9 O -0.544 6.544 10 N -0.701 5.701 11 C 0.147 3.853 12 H 0.100 0.900 13 C -0.132 4.132 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.104 4.104 17 H 0.078 0.922 18 C 0.167 3.833 19 N -0.742 5.742 20 C -0.328 4.328 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.946 5.946 24 Si 1.082 2.918 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.288 1.288 28 N -0.204 5.204 29 N -0.062 5.062 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.200 0.800 40 H 0.409 0.591 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.019 0.981 48 H 0.021 0.979 49 H 0.367 0.633 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.601 8.518 -18.010 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.138 5.138 6 C -0.065 4.065 7 C -0.239 4.239 8 C 0.390 3.610 9 O -0.420 6.420 10 N -0.350 5.350 11 C 0.042 3.958 12 H 0.118 0.882 13 C -0.171 4.171 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.124 4.124 17 H 0.096 0.904 18 C 0.040 3.960 19 N -0.388 5.388 20 C -0.459 4.459 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.592 5.592 24 Si 0.914 3.086 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.214 1.214 28 N -0.078 5.078 29 N -0.042 5.042 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.217 0.783 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.200 0.800 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.803 9.112 -17.477 28.657 hybrid contribution -1.821 -0.428 -0.697 1.996 sum -22.624 8.684 -18.174 30.291 Atomic orbital electron populations 1.22287 0.91853 1.03681 1.04071 1.21099 0.95170 0.94194 0.80851 1.22001 1.02718 0.92157 1.03833 1.22311 1.02871 1.01266 0.95747 1.50840 1.42179 1.05218 1.15577 1.23222 0.98377 0.86970 0.97904 1.21495 1.12798 0.93826 0.95789 1.16750 0.77371 0.85769 0.81123 1.90791 1.52079 1.34446 1.64713 1.45765 1.61826 1.10421 1.16951 1.22089 0.94570 0.84821 0.94356 0.88170 1.22733 0.97570 0.99518 0.97269 1.22089 0.96186 0.99053 0.98596 1.22072 0.94913 0.98580 0.99461 1.22434 0.94710 0.99675 0.95552 0.90353 1.20615 0.85665 0.97741 0.92027 1.42338 1.02247 1.86846 1.07319 1.20065 0.84125 1.45401 0.96319 0.91873 1.25752 1.04084 1.00508 0.94093 1.70849 1.20000 1.51783 1.16582 0.83197 0.74990 0.76228 0.74219 1.22361 1.22230 1.21416 1.74680 1.12677 0.97994 1.22440 1.81975 1.15613 1.16968 0.89604 0.91206 0.89601 0.91368 0.91101 0.90110 0.90591 0.91112 0.89359 0.91002 0.78285 0.75522 0.91426 0.91447 0.91796 0.91861 0.90958 0.91466 0.96332 0.96122 0.80011 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.74 37.16 0.32 -0.32 16 2 C 0.17 0.94 1.25 -131.82 -0.16 0.78 16 3 C -0.15 -0.78 8.11 37.16 0.30 -0.48 16 4 C -0.16 -0.64 8.30 37.15 0.31 -0.33 16 5 N -0.35 -3.27 3.44 -48.36 -0.17 -3.43 16 6 C 0.09 0.92 10.43 -16.84 -0.18 0.75 16 7 C -0.10 -1.31 6.99 -83.55 -0.58 -1.90 16 8 C 0.61 8.96 7.82 -12.48 -0.10 8.86 16 9 O -0.54 -9.06 16.51 5.28 0.09 -8.97 16 10 N -0.70 -10.05 5.18 -52.86 -0.27 -10.32 16 11 C 0.15 2.16 2.70 -65.88 -0.18 1.98 16 12 H 0.10 1.62 7.47 -51.93 -0.39 1.23 16 13 C -0.13 -1.68 6.52 -24.99 -0.16 -1.84 16 14 C -0.12 -1.52 6.80 -25.61 -0.17 -1.69 16 15 C -0.11 -1.74 6.14 -25.62 -0.16 -1.89 16 16 C -0.10 -1.73 2.53 -88.97 -0.22 -1.95 16 17 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 18 C 0.17 3.55 5.58 -4.04 -0.02 3.53 16 19 N -0.74 -19.28 5.46 -59.91 -0.33 -19.61 16 20 C -0.33 -9.61 9.99 -15.06 -0.15 -9.76 16 21 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 23 N -0.95 -29.92 13.70 55.49 0.76 -29.16 16 24 Si 1.08 26.80 29.92 -169.99 -5.09 21.72 16 25 H -0.30 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 N -0.20 -2.87 12.04 32.85 0.40 -2.48 16 29 N -0.06 -0.78 12.91 60.35 0.78 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.07 0.24 7.44 -51.93 -0.39 -0.14 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.20 1.42 7.63 -52.48 -0.40 1.02 16 40 H 0.41 5.66 8.25 -40.82 -0.34 5.33 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.22 7.74 -51.92 -0.40 0.82 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 49 H 0.37 9.64 6.41 -40.82 -0.26 9.38 16 50 H 0.25 7.91 6.77 -40.82 -0.28 7.63 16 LS Contribution 407.34 15.07 6.14 6.14 Total: -1.00 -35.75 407.34 -7.35 -43.10 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.40 Total: 8.80 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.25 Total: -5.79 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 1.17 Total: -65.00 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -5.09 Total: 21.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.75 -7.35 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716062013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.914 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds