Wall clock time and date at job start Tue Mar 31 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.52994 * 109.47534 * 239.99552 * 2 1 3 5 5 N 1.46502 * 109.46938 * 119.99628 * 2 1 3 6 6 C 1.34816 * 126.59529 * 75.00450 * 5 2 1 7 7 C 1.36592 * 106.84453 * 180.02562 * 6 5 2 8 8 C 1.47523 * 125.77464 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99896 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00033 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99914 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.81544 * 31.66301 * 11 10 8 13 13 C 1.55030 * 110.87608 * 268.31822 * 11 10 8 14 14 C 1.54269 * 104.28030 * 203.89970 * 13 11 10 15 15 C 1.53875 * 106.59701 * 23.51721 * 14 13 11 16 16 C 1.54260 * 106.60118 * 359.97438 * 15 14 13 17 17 H 1.09003 * 110.48363 * 95.20604 * 16 15 14 18 18 C 1.53004 * 110.49056 * 217.71334 * 16 15 14 19 19 N 1.46504 * 109.46932 * 291.76188 * 18 16 15 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46986 * 270.00112 * 24 22 20 26 26 H 1.48496 * 109.47029 * 30.00128 * 24 22 20 27 27 H 1.48499 * 109.47352 * 149.99958 * 24 22 20 28 28 N 1.34405 * 108.45801 * 0.23809 * 7 6 5 29 29 N 1.28766 * 109.51939 * 359.59124 * 28 7 6 30 30 H 1.08999 * 109.47133 * 299.99990 * 1 2 3 31 31 H 1.08996 * 109.46966 * 60.00315 * 1 2 3 32 32 H 1.08998 * 109.47005 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47777 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47248 * 299.99841 * 3 2 1 35 35 H 1.09002 * 109.47474 * 59.99742 * 3 2 1 36 36 H 1.09003 * 109.47415 * 300.00689 * 4 2 1 37 37 H 1.09002 * 109.46617 * 60.00425 * 4 2 1 38 38 H 1.09002 * 109.47683 * 180.02562 * 4 2 1 39 39 H 1.08005 * 126.57632 * 0.05002 * 6 5 2 40 40 H 0.96997 * 119.99930 * 359.97438 * 10 8 7 41 41 H 1.08996 * 110.52317 * 85.15388 * 13 11 10 42 42 H 1.08997 * 110.47400 * 322.61936 * 13 11 10 43 43 H 1.09005 * 110.03070 * 264.23254 * 14 13 11 44 44 H 1.08998 * 110.03310 * 142.79973 * 14 13 11 45 45 H 1.09008 * 110.03199 * 240.71455 * 15 14 13 46 46 H 1.08997 * 110.07518 * 119.31277 * 15 14 13 47 47 H 1.08998 * 109.47524 * 171.75832 * 18 16 15 48 48 H 1.08997 * 109.47093 * 51.75733 * 18 16 15 49 49 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 50 50 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1962 6 6 2.0221 -2.0215 1.4106 7 6 2.5627 -2.2214 2.6490 8 6 2.7636 -3.5292 3.3015 9 8 2.4357 -4.5508 2.7294 10 7 3.3107 -3.5916 4.5316 11 6 3.5097 -4.8902 5.1798 12 1 3.7109 -5.6654 4.4403 13 6 2.2828 -5.2676 6.0491 14 6 2.8454 -6.2537 7.0936 15 6 4.3530 -5.9656 7.2028 16 6 4.6541 -4.8149 6.2205 17 1 4.6352 -3.8562 6.7388 18 6 6.0093 -5.0294 5.5435 19 7 7.0789 -4.8784 6.5331 20 6 8.3867 -5.0279 6.1559 21 1 8.6298 -5.2576 5.1290 22 6 9.4002 -4.8843 7.0935 23 7 9.1042 -4.6039 8.3450 24 14 11.1844 -5.0890 6.5791 25 1 11.5835 -6.5111 6.7319 26 1 11.3403 -4.6808 5.1599 27 1 12.0476 -4.2377 7.4367 28 7 2.8752 -1.0247 3.1751 29 7 2.5710 -0.0943 2.3386 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1391 38 1 3.1301 -0.7217 -1.2489 39 1 1.6664 -2.7836 0.7330 40 1 3.5726 -2.7766 4.9878 41 1 1.5179 -5.7508 5.4414 42 1 1.8766 -4.3830 6.5397 43 1 2.6843 -7.2799 6.7630 44 1 2.3635 -6.0916 8.0577 45 1 4.9236 -6.8519 6.9252 46 1 4.6036 -5.6641 8.2198 47 1 6.1405 -4.2924 4.7513 48 1 6.0478 -6.0318 5.1171 49 1 6.8606 -4.6725 7.4556 50 1 8.1777 -4.4980 8.6121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716062013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:06 Heat of formation + Delta-G solvation = 26.957169 kcal Electronic energy + Delta-G solvation = -28963.219972 eV Core-core repulsion = 25026.061035 eV Total energy + Delta-G solvation = -3937.158938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.35691 -40.95131 -39.21696 -38.31057 -36.64935 -34.86481 -33.32538 -33.04059 -31.96976 -30.02831 -28.88395 -28.43824 -28.35966 -26.14669 -24.90783 -24.62927 -23.95590 -21.94531 -21.62613 -21.28612 -20.50876 -19.44927 -18.56049 -17.72071 -17.39436 -17.15873 -16.90984 -15.92597 -15.87331 -15.77612 -15.69783 -15.45128 -15.13364 -15.10323 -14.91872 -14.88581 -14.32380 -13.73186 -13.65232 -13.42032 -13.34794 -13.23427 -13.20614 -12.80155 -12.75211 -12.67490 -12.48997 -12.44753 -12.37368 -12.12157 -11.99068 -11.93445 -11.86752 -11.71590 -11.35622 -11.31209 -11.30258 -11.22040 -10.95083 -10.45920 -10.04861 -9.13159 -8.42556 -5.35710 0.11567 0.56569 1.00600 1.56201 1.67381 1.81936 2.04517 2.18112 2.68848 3.11303 3.21006 3.36167 3.38855 3.60221 3.62426 3.68236 3.74581 3.80110 3.88972 4.02088 4.16852 4.33651 4.38368 4.39118 4.45085 4.51265 4.55206 4.58020 4.58860 4.64953 4.65509 4.73084 4.77174 4.78858 4.88108 4.96427 5.05452 5.07505 5.13958 5.17456 5.20038 5.22486 5.23834 5.42493 5.49789 5.52086 5.55457 6.35362 6.48313 6.85983 7.06556 7.07627 7.97872 8.09440 9.09850 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.002534 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.868152 B =11047.355531 C =12709.572774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 C -0.149 4.149 4 C -0.162 4.162 5 N -0.338 5.338 6 C 0.108 3.892 7 C -0.125 4.125 8 C 0.607 3.393 9 O -0.566 6.566 10 N -0.701 5.701 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.095 4.095 17 H 0.078 0.922 18 C 0.170 3.830 19 N -0.751 5.751 20 C -0.337 4.337 21 H 0.060 0.940 22 C -0.102 4.102 23 N -0.972 5.972 24 Si 1.130 2.870 25 H -0.282 1.282 26 H -0.277 1.277 27 H -0.290 1.290 28 N -0.231 5.231 29 N -0.084 5.084 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.231 0.769 40 H 0.411 0.589 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.007 0.993 48 H 0.015 0.985 49 H 0.363 0.637 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.202 8.589 -20.009 32.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.220 4.220 5 N -0.124 5.124 6 C -0.050 4.050 7 C -0.265 4.265 8 C 0.392 3.608 9 O -0.444 6.444 10 N -0.349 5.349 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.114 4.114 17 H 0.096 0.904 18 C 0.043 3.957 19 N -0.396 5.396 20 C -0.469 4.469 21 H 0.078 0.922 22 C -0.294 4.294 23 N -0.620 5.620 24 Si 0.955 3.045 25 H -0.209 1.209 26 H -0.202 1.202 27 H -0.216 1.216 28 N -0.104 5.104 29 N -0.064 5.064 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.033 0.967 49 H 0.196 0.804 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.445 9.210 -19.502 31.128 hybrid contribution -1.376 -0.396 -0.203 1.446 sum -23.821 8.814 -19.705 32.147 Atomic orbital electron populations 1.22305 0.90124 1.04248 1.04790 1.21619 0.96428 0.94230 0.79990 1.22031 1.01683 0.92243 1.04657 1.22357 1.01982 1.01975 0.95638 1.51217 1.40467 1.05122 1.15552 1.23639 0.96615 0.87718 0.97064 1.21456 1.14852 0.93016 0.97167 1.16935 0.76787 0.86198 0.80877 1.90765 1.53215 1.35302 1.65163 1.45769 1.61780 1.10274 1.17119 1.21962 0.94817 0.84754 0.93746 0.89586 1.22670 0.96513 0.99995 0.96866 1.22041 0.93575 0.99629 0.99622 1.22024 0.97179 0.97115 0.98547 1.22289 0.92734 1.00199 0.96168 0.90398 1.20686 0.87031 0.96743 0.91235 1.42492 1.02418 1.86736 1.07953 1.20388 0.85744 1.44505 0.96234 0.92185 1.27231 1.08227 1.00233 0.93666 1.70959 1.19501 1.53842 1.17722 0.82592 0.70346 0.76782 0.74789 1.20868 1.20216 1.21607 1.74648 1.13675 0.98492 1.23559 1.81890 1.16579 1.17185 0.90741 0.92616 0.86747 0.90883 0.92722 0.87029 0.92023 0.90251 0.86576 0.92438 0.75304 0.75322 0.90601 0.90457 0.90671 0.89923 0.92763 0.92022 0.97543 0.96712 0.80446 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.74 71.98 0.63 -0.21 16 2 C 0.16 1.44 1.25 3.60 0.00 1.45 16 3 C -0.15 -1.35 8.11 71.98 0.58 -0.77 16 4 C -0.16 -0.82 8.30 71.98 0.60 -0.22 16 5 N -0.34 -5.95 3.44 -306.91 -1.06 -7.01 16 6 C 0.11 2.04 10.43 83.85 0.87 2.91 16 7 C -0.12 -3.28 6.99 40.81 0.29 -3.00 16 8 C 0.61 17.95 7.82 86.69 0.68 18.63 16 9 O -0.57 -18.66 16.51 -4.01 -0.07 -18.72 16 10 N -0.70 -20.26 5.18 -439.40 -2.28 -22.53 16 11 C 0.15 4.46 2.70 46.32 0.12 4.58 16 12 H 0.09 2.80 7.47 -2.38 -0.02 2.78 16 13 C -0.12 -2.90 6.52 31.72 0.21 -2.69 16 14 C -0.11 -2.57 6.80 31.32 0.21 -2.36 16 15 C -0.11 -3.40 6.14 31.32 0.19 -3.21 16 16 C -0.09 -3.17 2.53 -9.73 -0.02 -3.20 16 17 H 0.08 2.64 8.01 -2.39 -0.02 2.62 16 18 C 0.17 7.41 5.58 86.38 0.48 7.89 16 19 N -0.75 -40.05 5.46 -343.44 -1.88 -41.93 16 20 C -0.34 -20.06 9.99 84.03 0.84 -19.22 16 21 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 22 C -0.10 -6.16 5.50 84.86 0.47 -5.69 16 23 N -0.97 -62.38 13.70 21.65 0.30 -62.08 16 24 Si 1.13 53.93 29.92 68.60 2.05 55.98 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 N -0.23 -6.62 12.04 -50.00 -0.60 -7.22 16 29 N -0.08 -2.14 12.91 37.02 0.48 -1.67 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.06 0.75 8.06 -2.39 -0.02 0.73 16 36 H 0.08 0.29 7.44 -2.39 -0.02 0.27 16 37 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.23 2.73 7.63 -2.91 -0.02 2.71 16 40 H 0.41 11.63 8.25 -92.71 -0.76 10.87 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.86 7.74 -2.38 -0.02 1.84 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 48 H 0.01 0.67 8.01 -2.39 -0.02 0.65 16 49 H 0.36 19.69 6.41 -92.71 -0.59 19.09 16 50 H 0.25 15.62 6.77 -92.70 -0.63 14.99 16 Total: -1.00 -78.77 407.34 2.83 -75.94 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.28 Total: 34.35 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 6.15 Total: -5.10 kcal Atomic # 7 Polarization: -137.40 SS G_CDS: -5.04 Total: -142.44 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.07 Total: -18.72 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 2.05 Total: 55.98 kcal Total: -78.77 2.83 -75.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716062013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.897 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds