Wall clock time and date at job start Tue Mar 31 2020 19:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46496 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.34821 * 126.58951 * 125.00481 * 4 3 2 6 6 C 1.36601 * 106.83633 * 179.97438 * 5 4 3 7 7 C 1.47518 * 125.76900 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00394 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00076 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00240 * 174.60027 * 9 7 6 11 11 C 1.53000 * 109.47009 * 64.34762 * 10 9 7 12 12 N 1.46493 * 109.47425 * 54.81101 * 11 10 9 13 13 C 1.36940 * 120.00295 * 184.97367 * 12 11 10 14 14 H 1.08001 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00121 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99929 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47518 * 59.99953 * 17 15 13 19 19 H 1.48500 * 109.47234 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46957 * 299.99873 * 17 15 13 21 21 C 1.53004 * 109.47230 * 184.34830 * 10 9 7 22 22 C 1.53000 * 109.47272 * 59.99484 * 21 10 9 23 23 C 1.53008 * 109.46693 * 60.00409 * 22 21 10 24 24 C 1.53004 * 109.46928 * 299.99802 * 23 22 21 25 25 C 1.52996 * 109.46956 * 304.34646 * 10 9 7 26 26 N 1.34402 * 108.45767 * 0.24287 * 6 5 4 27 27 N 1.28767 * 109.52203 * 359.58258 * 26 6 5 28 28 H 1.08998 * 109.47237 * 59.99964 * 1 2 3 29 29 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46978 * 299.99782 * 1 2 3 31 31 H 1.09002 * 109.47341 * 240.00299 * 2 1 3 32 32 H 1.08998 * 109.47237 * 120.00036 * 2 1 3 33 33 H 1.09002 * 109.46797 * 59.99966 * 3 2 1 34 34 H 1.08998 * 109.47122 * 300.00106 * 3 2 1 35 35 H 1.07992 * 126.58215 * 359.97438 * 5 4 3 36 36 H 0.97008 * 119.99491 * 354.59983 * 9 7 6 37 37 H 1.09002 * 109.46787 * 174.81369 * 11 10 9 38 38 H 1.08997 * 109.46973 * 294.80985 * 11 10 9 39 39 H 0.97001 * 119.99920 * 4.98199 * 12 11 10 40 40 H 0.97008 * 119.99590 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47181 * 180.02562 * 21 10 9 42 42 H 1.09007 * 109.46793 * 299.99780 * 21 10 9 43 43 H 1.08995 * 109.47060 * 300.00421 * 22 21 10 44 44 H 1.08999 * 109.46990 * 180.02562 * 22 21 10 45 45 H 1.08994 * 109.46691 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47105 * 59.99744 * 23 22 21 47 47 H 1.09000 * 109.46732 * 300.00183 * 24 23 22 48 48 H 1.08998 * 109.46519 * 180.02562 * 24 23 22 49 49 H 1.08999 * 109.47265 * 59.99860 * 25 10 9 50 50 H 1.09008 * 109.46917 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0635 -0.8858 6 6 5.5944 1.7992 -0.5068 7 6 6.8108 2.2779 -1.1905 8 8 6.7163 2.9728 -2.1838 9 7 8.0269 1.9450 -0.7142 10 6 9.2324 2.3196 -1.4575 11 6 9.3506 3.8444 -1.5023 12 7 9.3118 4.3776 -0.1384 13 6 9.2992 5.7314 0.0675 14 1 9.3175 6.4060 -0.7758 15 6 9.2629 6.2365 1.3598 16 7 9.2411 5.4144 2.3874 17 14 9.2450 8.0832 1.6406 18 1 8.0455 8.6710 0.9919 19 1 9.2051 8.3619 3.0987 20 1 10.4696 8.6849 1.0544 21 6 10.4629 1.7329 -0.7628 22 6 10.3446 0.2081 -0.7178 23 6 10.2550 -0.3387 -2.1440 24 6 9.0245 0.2481 -2.8387 25 6 9.1427 1.7728 -2.8836 26 7 5.5636 1.0244 0.5911 27 7 4.3404 0.7976 0.9234 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9967 2.6560 -1.7330 36 1 8.1038 1.4573 0.1208 37 1 10.2931 4.1220 -1.9743 38 1 8.5213 4.2563 -2.0772 39 1 9.2951 3.7717 0.6189 40 1 9.2162 5.7675 3.2906 41 1 11.3599 2.0120 -1.3155 42 1 10.5267 2.1225 0.2533 43 1 9.4477 -0.0706 -0.1648 44 1 11.2210 -0.2098 -0.2224 45 1 10.1712 -1.4249 -2.1120 46 1 11.1520 -0.0599 -2.6970 47 1 8.1276 -0.0307 -2.2856 48 1 8.9605 -0.1418 -3.8546 49 1 8.2661 2.1908 -3.3786 50 1 10.0400 2.0512 -3.4365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717526371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:29 Heat of formation + Delta-G solvation = 53.975317 kcal Electronic energy + Delta-G solvation = -30256.693255 eV Core-core repulsion = 26320.705912 eV Total energy + Delta-G solvation = -3935.987343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09543 -40.07902 -37.46059 -36.17261 -34.55429 -33.20036 -32.68234 -31.39480 -30.63592 -30.38114 -29.08421 -27.21564 -25.16763 -23.69851 -22.96120 -22.89724 -22.13376 -21.63358 -20.63677 -20.13329 -18.66262 -18.04142 -17.07306 -16.38069 -16.15675 -15.47206 -15.31634 -14.98123 -14.66587 -14.52447 -14.19405 -14.13589 -13.88699 -13.53818 -13.34945 -13.13849 -13.00171 -12.80802 -12.50216 -12.18378 -12.16612 -12.02459 -11.93671 -11.84926 -11.59694 -11.39028 -11.20118 -11.07327 -10.85307 -10.77755 -10.71059 -10.41778 -10.31963 -10.12745 -9.98173 -9.89792 -9.54306 -9.28139 -9.12768 -8.70319 -8.36944 -6.74679 -5.63969 -2.90106 1.22442 1.96216 2.01791 3.51008 3.54422 3.55155 3.56762 3.75722 4.07873 4.31228 4.37326 4.62699 4.69545 4.81184 4.83396 4.95797 4.99872 5.01343 5.04681 5.12672 5.16164 5.35684 5.43974 5.45666 5.51539 5.60217 5.68620 5.71045 5.75131 5.77633 5.81110 5.88715 5.96537 6.00491 6.21935 6.26712 6.33476 6.36930 6.41788 6.44525 6.54109 6.62941 6.70210 6.77528 7.01846 7.23001 7.81989 7.92766 8.17133 8.55326 8.70473 9.66286 10.26069 10.61466 11.58978 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008261 B = 0.004076 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.470853 B = 6867.293546 C = 9316.430334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.122 3.878 4 N -0.364 5.364 5 C 0.087 3.913 6 C -0.090 4.090 7 C 0.612 3.388 8 O -0.536 6.536 9 N -0.689 5.689 10 C 0.178 3.822 11 C 0.141 3.859 12 N -0.725 5.725 13 C -0.229 4.229 14 H 0.067 0.933 15 C -0.017 4.017 16 N -0.935 5.935 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.287 1.287 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.129 4.129 26 N -0.201 5.201 27 N -0.069 5.069 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.404 0.596 37 H 0.019 0.981 38 H 0.046 0.954 39 H 0.382 0.618 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.086 0.914 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -15.100 -8.831 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.150 5.150 5 C -0.069 4.069 6 C -0.229 4.229 7 C 0.395 3.605 8 O -0.412 6.412 9 N -0.339 5.339 10 C 0.092 3.908 11 C 0.013 3.987 12 N -0.369 5.369 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.212 4.212 16 N -0.584 5.584 17 Si 0.736 3.264 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.214 1.214 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.168 4.168 26 N -0.075 5.075 27 N -0.049 5.049 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.219 0.781 36 H 0.239 0.761 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.216 0.784 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.477 -15.307 -8.323 21.430 hybrid contribution -0.247 1.412 0.143 1.441 sum -12.723 -13.895 -8.180 20.540 Atomic orbital electron populations 1.21705 0.93986 1.02732 1.02347 1.21825 0.96813 0.94745 1.04163 1.22104 0.72914 0.99848 1.05089 1.50492 1.08596 1.35764 1.20136 1.23344 0.90297 0.97103 0.96174 1.21656 0.94887 1.07505 0.98878 1.16558 0.81610 0.79153 0.83142 1.90721 1.86493 1.37435 1.26566 1.45650 1.04611 1.57587 1.26068 1.20588 0.83486 0.95742 0.90982 1.21104 0.98705 0.89427 0.89489 1.42224 1.89258 1.04296 1.01115 1.19178 1.41659 0.83411 0.91795 0.91479 1.24679 1.03617 0.97334 0.95574 1.69649 1.58368 1.32827 0.97566 0.86303 0.77741 0.85826 0.76548 1.21521 1.21853 1.21414 1.21784 0.97005 0.94534 1.02426 1.21563 1.01725 0.95866 0.96655 1.21533 0.98354 0.99228 0.96324 1.21459 0.98171 0.95781 0.99716 1.21910 1.03524 0.95055 0.96294 1.74638 1.12662 1.10325 1.09877 1.81923 0.93514 1.17736 1.11766 0.92266 0.91739 0.92067 0.91114 0.90027 0.88436 0.87845 0.78139 0.76052 0.96372 0.93611 0.78380 0.93725 0.90551 0.90169 0.91970 0.92041 0.92671 0.92185 0.92269 0.92644 0.89559 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.14 -0.87 6.14 -26.73 -0.16 -1.03 16 3 C 0.12 0.85 6.54 -4.04 -0.03 0.83 16 4 N -0.36 -4.30 3.69 -61.06 -0.23 -4.52 16 5 C 0.09 1.14 11.27 -16.83 -0.19 0.95 16 6 C -0.09 -1.48 6.99 -83.55 -0.58 -2.06 16 7 C 0.61 11.19 7.15 -12.48 -0.09 11.10 16 8 O -0.54 -10.71 13.16 5.29 0.07 -10.64 16 9 N -0.69 -12.02 3.48 -48.64 -0.17 -12.19 16 10 C 0.18 3.04 0.32 -131.82 -0.04 3.00 16 11 C 0.14 3.06 4.94 -4.05 -0.02 3.04 16 12 N -0.72 -18.89 5.19 -59.91 -0.31 -19.20 16 13 C -0.23 -6.67 9.99 -15.06 -0.15 -6.82 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 16 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 17 Si 0.90 23.32 29.55 -169.99 -5.02 18.29 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 21 C -0.12 -1.86 4.64 -26.73 -0.12 -1.98 16 22 C -0.12 -1.54 5.75 -26.73 -0.15 -1.69 16 23 C -0.12 -1.35 5.92 -26.72 -0.16 -1.51 16 24 C -0.11 -1.45 5.77 -26.73 -0.15 -1.60 16 25 C -0.13 -1.93 4.45 -26.73 -0.12 -2.05 16 26 N -0.20 -3.41 12.05 32.85 0.40 -3.01 16 27 N -0.07 -1.05 13.65 60.35 0.82 -0.23 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.20 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.40 6.91 7.17 -40.82 -0.29 6.62 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 1.09 6.45 -51.93 -0.34 0.76 16 39 H 0.38 10.33 6.46 -40.82 -0.26 10.07 16 40 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.44 7.09 -51.93 -0.37 1.07 16 43 H 0.06 0.81 6.95 -51.93 -0.36 0.45 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.81 7.53 -51.93 -0.39 0.42 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.44 6.04 -51.93 -0.31 1.13 16 50 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -34.87 396.24 -7.66 -42.52 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -8.21 Total: 12.00 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.70 Total: -0.73 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: 1.24 Total: -67.42 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.87 -7.66 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717526371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.499 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds