Wall clock time and date at job start Tue Mar 31 2020 19:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46496 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.34821 * 126.58951 * 125.00481 * 4 3 2 6 6 C 1.36601 * 106.83633 * 179.97438 * 5 4 3 7 7 C 1.47518 * 125.76900 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00394 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00076 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00240 * 174.60027 * 9 7 6 11 11 C 1.53000 * 109.47009 * 64.34762 * 10 9 7 12 12 N 1.46493 * 109.47425 * 54.81101 * 11 10 9 13 13 C 1.36940 * 120.00295 * 184.97367 * 12 11 10 14 14 H 1.08001 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00121 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99929 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47518 * 59.99953 * 17 15 13 19 19 H 1.48500 * 109.47234 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46957 * 299.99873 * 17 15 13 21 21 C 1.53004 * 109.47230 * 184.34830 * 10 9 7 22 22 C 1.53000 * 109.47272 * 59.99484 * 21 10 9 23 23 C 1.53008 * 109.46693 * 60.00409 * 22 21 10 24 24 C 1.53004 * 109.46928 * 299.99802 * 23 22 21 25 25 C 1.52996 * 109.46956 * 304.34646 * 10 9 7 26 26 N 1.34402 * 108.45767 * 0.24287 * 6 5 4 27 27 N 1.28767 * 109.52203 * 359.58258 * 26 6 5 28 28 H 1.08998 * 109.47237 * 59.99964 * 1 2 3 29 29 H 1.09006 * 109.46726 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46978 * 299.99782 * 1 2 3 31 31 H 1.09002 * 109.47341 * 240.00299 * 2 1 3 32 32 H 1.08998 * 109.47237 * 120.00036 * 2 1 3 33 33 H 1.09002 * 109.46797 * 59.99966 * 3 2 1 34 34 H 1.08998 * 109.47122 * 300.00106 * 3 2 1 35 35 H 1.07992 * 126.58215 * 359.97438 * 5 4 3 36 36 H 0.97008 * 119.99491 * 354.59983 * 9 7 6 37 37 H 1.09002 * 109.46787 * 174.81369 * 11 10 9 38 38 H 1.08997 * 109.46973 * 294.80985 * 11 10 9 39 39 H 0.97001 * 119.99920 * 4.98199 * 12 11 10 40 40 H 0.97008 * 119.99590 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.47181 * 180.02562 * 21 10 9 42 42 H 1.09007 * 109.46793 * 299.99780 * 21 10 9 43 43 H 1.08995 * 109.47060 * 300.00421 * 22 21 10 44 44 H 1.08999 * 109.46990 * 180.02562 * 22 21 10 45 45 H 1.08994 * 109.46691 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47105 * 59.99744 * 23 22 21 47 47 H 1.09000 * 109.46732 * 300.00183 * 24 23 22 48 48 H 1.08998 * 109.46519 * 180.02562 * 24 23 22 49 49 H 1.08999 * 109.47265 * 59.99860 * 25 10 9 50 50 H 1.09008 * 109.46917 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0635 -0.8858 6 6 5.5944 1.7992 -0.5068 7 6 6.8108 2.2779 -1.1905 8 8 6.7163 2.9728 -2.1838 9 7 8.0269 1.9450 -0.7142 10 6 9.2324 2.3196 -1.4575 11 6 9.3506 3.8444 -1.5023 12 7 9.3118 4.3776 -0.1384 13 6 9.2992 5.7314 0.0675 14 1 9.3175 6.4060 -0.7758 15 6 9.2629 6.2365 1.3598 16 7 9.2411 5.4144 2.3874 17 14 9.2450 8.0832 1.6406 18 1 8.0455 8.6710 0.9919 19 1 9.2051 8.3619 3.0987 20 1 10.4696 8.6849 1.0544 21 6 10.4629 1.7329 -0.7628 22 6 10.3446 0.2081 -0.7178 23 6 10.2550 -0.3387 -2.1440 24 6 9.0245 0.2481 -2.8387 25 6 9.1427 1.7728 -2.8836 26 7 5.5636 1.0244 0.5911 27 7 4.3404 0.7976 0.9234 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9967 2.6560 -1.7330 36 1 8.1038 1.4573 0.1208 37 1 10.2931 4.1220 -1.9743 38 1 8.5213 4.2563 -2.0772 39 1 9.2951 3.7717 0.6189 40 1 9.2162 5.7675 3.2906 41 1 11.3599 2.0120 -1.3155 42 1 10.5267 2.1225 0.2533 43 1 9.4477 -0.0706 -0.1648 44 1 11.2210 -0.2098 -0.2224 45 1 10.1712 -1.4249 -2.1120 46 1 11.1520 -0.0599 -2.6970 47 1 8.1276 -0.0307 -2.2856 48 1 8.9605 -0.1418 -3.8546 49 1 8.2661 2.1908 -3.3786 50 1 10.0400 2.0512 -3.4365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717526371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:28 Heat of formation + Delta-G solvation = 30.517781 kcal Electronic energy + Delta-G solvation = -30257.710450 eV Core-core repulsion = 26320.705912 eV Total energy + Delta-G solvation = -3937.004538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.20674 -41.43267 -38.78156 -36.91256 -36.36952 -34.65604 -33.61648 -33.10924 -31.94054 -31.61440 -30.58400 -27.92397 -26.99631 -24.95284 -24.63738 -23.75574 -23.41199 -22.51605 -21.91864 -21.29064 -19.98037 -19.22686 -19.15051 -17.35554 -17.15740 -16.88526 -16.57053 -16.21079 -16.03809 -15.75292 -15.61582 -15.34269 -15.13114 -14.85888 -14.63182 -14.54740 -14.33249 -13.80821 -13.61100 -13.43070 -13.18904 -13.15497 -13.01187 -12.94917 -12.81849 -12.73706 -12.57255 -12.47945 -12.22586 -12.13222 -11.96991 -11.85029 -11.74683 -11.46354 -11.25591 -11.23877 -11.08905 -10.95980 -10.53988 -10.30862 -9.79753 -8.92321 -7.92170 -5.18741 0.17384 0.69752 1.13017 1.43890 1.47410 1.53483 2.22211 2.41187 2.56791 3.23248 3.36127 3.41305 3.69102 3.81838 3.82135 3.89782 3.91421 4.00058 4.12924 4.15800 4.23105 4.28305 4.45353 4.48728 4.50527 4.56590 4.62647 4.64261 4.73834 4.81252 4.86903 4.89577 4.94368 5.10247 5.12840 5.17285 5.18642 5.21742 5.28475 5.32708 5.33720 5.40221 5.46829 5.50359 5.52015 5.56011 5.76840 6.29302 6.59030 6.94746 7.30582 7.36256 8.13321 8.39361 9.30624 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008261 B = 0.004076 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.470853 B = 6867.293546 C = 9316.430334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.348 5.348 5 C 0.103 3.897 6 C -0.123 4.123 7 C 0.607 3.393 8 O -0.560 6.560 9 N -0.688 5.688 10 C 0.183 3.817 11 C 0.142 3.858 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.066 0.934 15 C -0.074 4.074 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.277 1.277 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.107 4.107 25 C -0.122 4.122 26 N -0.226 5.226 27 N -0.089 5.089 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.233 0.767 36 H 0.404 0.596 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 -15.592 -10.113 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.010 4.010 4 N -0.133 5.133 5 C -0.055 4.055 6 C -0.263 4.263 7 C 0.392 3.608 8 O -0.438 6.438 9 N -0.337 5.337 10 C 0.097 3.903 11 C 0.014 3.986 12 N -0.373 5.373 13 C -0.372 4.372 14 H 0.084 0.916 15 C -0.266 4.266 16 N -0.617 5.617 17 Si 0.800 3.200 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.203 1.203 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.161 4.161 26 N -0.100 5.100 27 N -0.069 5.069 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.471 -15.827 -9.620 22.902 hybrid contribution -0.045 1.575 0.499 1.653 sum -13.516 -14.252 -9.121 21.656 Atomic orbital electron populations 1.21678 0.92131 1.03180 1.03254 1.21771 0.98241 0.93947 1.03042 1.22663 0.70001 1.00908 1.07420 1.50823 1.10033 1.33895 1.18552 1.23786 0.89244 0.96088 0.96398 1.21648 0.95520 1.09315 0.99821 1.16865 0.82296 0.78731 0.82945 1.90694 1.86951 1.38600 1.27602 1.45675 1.04715 1.57281 1.26007 1.20542 0.84224 0.92692 0.92846 1.21192 0.97664 0.92767 0.86957 1.42330 1.89026 1.03391 1.02587 1.19531 1.40872 0.84871 0.91956 0.91558 1.25476 1.04019 1.01786 0.95337 1.69814 1.59656 1.34584 0.97631 0.85257 0.78041 0.80580 0.76164 1.20960 1.21976 1.20303 1.21719 0.96404 0.96661 1.00419 1.21528 1.02195 0.93466 0.98017 1.21512 0.98093 1.00234 0.94993 1.21413 0.98357 0.93814 1.00886 1.21840 1.03222 0.96752 0.94275 1.74604 1.13746 1.11141 1.10473 1.81820 0.93491 1.18682 1.12921 0.90868 0.91581 0.91628 0.91539 0.91919 0.87354 0.84257 0.75036 0.76087 0.96068 0.95796 0.79235 0.94208 0.89781 0.93156 0.92584 0.90459 0.90698 0.90945 0.93522 0.90724 0.91464 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.13 -1.46 6.14 30.60 0.19 -1.27 16 3 C 0.11 1.28 6.54 86.38 0.56 1.85 16 4 N -0.35 -7.81 3.69 -347.10 -1.28 -9.09 16 5 C 0.10 2.57 11.27 83.85 0.95 3.52 16 6 C -0.12 -4.12 6.99 40.82 0.29 -3.84 16 7 C 0.61 22.83 7.15 86.69 0.62 23.45 16 8 O -0.56 -22.95 13.16 -4.00 -0.05 -23.00 16 9 N -0.69 -24.81 3.48 -426.07 -1.48 -26.30 16 10 C 0.18 6.35 0.32 3.60 0.00 6.35 16 11 C 0.14 6.32 4.94 86.38 0.43 6.75 16 12 N -0.73 -39.26 5.19 -343.47 -1.78 -41.04 16 13 C -0.24 -14.26 9.99 84.03 0.84 -13.42 16 14 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.07 -4.44 5.50 84.86 0.47 -3.98 16 16 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 17 Si 0.97 48.38 29.55 68.60 2.03 50.41 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 21 C -0.11 -3.55 4.64 30.60 0.14 -3.41 16 22 C -0.11 -2.79 5.75 30.60 0.18 -2.61 16 23 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 24 C -0.11 -2.55 5.77 30.60 0.18 -2.37 16 25 C -0.12 -3.59 4.45 30.59 0.14 -3.45 16 26 N -0.23 -7.87 12.05 -50.00 -0.60 -8.48 16 27 N -0.09 -2.71 13.65 37.02 0.51 -2.21 16 28 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.14 0.70 8.08 -2.39 -0.02 0.68 16 35 H 0.23 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.40 14.51 7.17 -92.70 -0.66 13.84 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.02 1.18 6.45 -2.39 -0.02 1.17 16 39 H 0.37 21.08 6.46 -92.71 -0.60 20.48 16 40 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.87 7.09 -2.38 -0.02 1.85 16 43 H 0.06 1.44 6.95 -2.39 -0.02 1.42 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 2.26 6.04 -2.39 -0.01 2.24 16 50 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -77.44 396.24 3.16 -74.28 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.31 Total: 41.07 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.86 Total: 5.23 kcal Atomic # 7 Polarization: -143.62 SS G_CDS: -4.36 Total: -147.98 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -77.44 3.16 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717526371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.795 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds