Wall clock time and date at job start Tue Mar 31 2020 19:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 N 1.46498 * 109.47018 * 179.97438 * 3 2 1 5 5 C 1.34814 * 126.59319 * 124.70626 * 4 3 2 6 6 C 1.36590 * 106.84188 * 180.26788 * 5 4 3 7 7 C 1.47523 * 125.77391 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99825 * 359.96547 * 7 6 5 9 9 N 1.34778 * 120.00178 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.45887 * 60.02650 * 11 10 9 13 13 C 1.53043 * 109.45741 * 300.06866 * 11 10 9 14 14 C 1.53195 * 109.31092 * 178.61506 * 13 11 10 15 15 N 1.46924 * 108.77461 * 54.63161 * 14 13 11 16 16 C 1.36938 * 120.62634 * 126.41134 * 15 14 13 17 17 H 1.08005 * 120.00295 * 207.66513 * 16 15 14 18 18 C 1.38814 * 119.99996 * 27.66662 * 16 15 14 19 19 N 1.31622 * 119.99933 * 17.37050 * 18 16 15 20 20 Si 1.86801 * 120.00204 * 197.36359 * 18 16 15 21 21 H 1.48501 * 109.47109 * 89.99937 * 20 18 16 22 22 H 1.48494 * 109.47414 * 210.00294 * 20 18 16 23 23 H 1.48503 * 109.46853 * 330.00281 * 20 18 16 24 24 C 1.46924 * 118.74235 * 306.39601 * 15 14 13 25 25 C 1.53039 * 109.45923 * 180.02562 * 11 10 9 26 26 N 1.34400 * 108.45933 * 0.02562 * 6 5 4 27 27 N 1.28764 * 109.52033 * 0.02562 * 26 6 5 28 28 H 1.08992 * 109.47296 * 60.00030 * 1 2 3 29 29 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46964 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.46964 * 239.99933 * 2 1 3 32 32 H 1.09006 * 109.46918 * 119.99564 * 2 1 3 33 33 H 1.09000 * 109.47288 * 60.00131 * 3 2 1 34 34 H 1.09003 * 109.46553 * 299.99932 * 3 2 1 35 35 H 1.08003 * 126.57949 * 0.26956 * 5 4 3 36 36 H 0.96997 * 119.99886 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47107 * 300.00187 * 10 9 7 38 38 H 1.09003 * 109.46613 * 59.99973 * 10 9 7 39 39 H 1.09000 * 109.47095 * 60.00241 * 12 11 10 40 40 H 1.09000 * 109.46488 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47111 * 299.99948 * 12 11 10 42 42 H 1.09001 * 109.49987 * 298.56356 * 13 11 10 43 43 H 1.09000 * 109.49774 * 58.66207 * 13 11 10 44 44 H 1.09006 * 109.58183 * 294.84858 * 14 13 11 45 45 H 1.08996 * 109.58688 * 174.42286 * 14 13 11 46 46 H 0.96998 * 119.99648 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.58178 * 293.81586 * 24 15 14 48 48 H 1.09005 * 109.70131 * 173.46315 * 24 15 14 49 49 H 1.09007 * 109.49164 * 301.33197 * 25 11 10 50 50 H 1.08994 * 109.49819 * 61.42940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0587 -0.8890 6 6 5.5944 1.7909 -0.5124 7 6 6.8109 2.2648 -1.1994 8 8 6.7164 2.9578 -2.1940 9 7 8.0269 1.9295 -0.7247 10 6 9.2349 2.3997 -1.4073 11 6 10.4715 1.8823 -0.6698 12 6 10.4553 0.3524 -0.6587 13 6 10.4617 2.4025 0.7694 14 6 11.6828 1.8545 1.5146 15 7 12.8933 2.1991 0.7566 16 6 13.9317 2.8560 1.3612 17 1 14.5853 3.4866 0.7767 18 6 14.1442 2.7114 2.7253 19 7 13.5920 1.7085 3.3747 20 14 15.2142 3.9398 3.6393 21 1 14.3704 5.0542 4.1408 22 1 15.8748 3.2647 4.7851 23 1 16.2479 4.4773 2.7185 24 6 12.9687 1.8253 -0.6623 25 6 11.7332 2.3742 -1.3827 26 7 5.5636 1.0225 0.5899 27 7 4.3405 0.7954 0.9220 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9968 2.6505 -1.7367 36 1 8.1022 1.3769 0.0689 37 1 9.2408 2.0287 -2.4322 38 1 9.2466 3.4897 -1.4153 39 1 10.4617 -0.0185 -1.6836 40 1 11.3365 -0.0164 -0.1337 41 1 9.5566 0.0023 -0.1511 42 1 10.4983 3.4919 0.7628 43 1 9.5515 2.0717 1.2696 44 1 11.6020 0.7709 1.6011 45 1 11.7347 2.2996 2.5082 46 1 13.7402 1.6077 4.3279 47 1 12.9929 0.7394 -0.7532 48 1 13.8693 2.2493 -1.1067 49 1 11.7283 2.0230 -2.4147 50 1 11.7576 3.4637 -1.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724300318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:56 Heat of formation + Delta-G solvation = 66.789767 kcal Electronic energy + Delta-G solvation = -29058.846157 eV Core-core repulsion = 25123.414490 eV Total energy + Delta-G solvation = -3935.431667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42863 -39.68072 -38.29841 -36.42447 -35.02105 -33.26775 -32.85624 -31.24561 -30.66211 -29.85496 -27.71805 -27.01705 -26.59045 -24.29471 -23.44658 -22.91981 -22.19268 -21.88699 -20.72158 -20.22765 -18.43627 -17.87971 -16.69276 -16.47304 -16.25581 -15.92388 -15.60014 -14.99121 -14.93375 -14.78652 -14.24149 -14.08243 -13.85449 -13.78605 -13.38472 -13.37755 -13.17294 -12.75924 -12.66984 -12.55252 -12.43012 -12.08284 -11.93401 -11.61954 -11.41915 -11.34447 -11.20645 -11.12035 -10.71031 -10.66520 -10.62890 -10.48987 -10.19620 -10.11924 -10.06585 -9.74883 -9.52957 -9.44635 -9.34556 -8.87727 -8.38969 -6.59716 -5.73328 -3.14761 0.89424 1.58048 1.71385 3.21250 3.27488 3.41616 3.48604 3.49464 3.83730 4.01340 4.13838 4.41808 4.54155 4.54961 4.62290 4.73600 4.78904 4.96009 5.09502 5.12987 5.24146 5.32204 5.36954 5.41076 5.46216 5.56808 5.58667 5.61861 5.84769 5.91322 6.01026 6.06075 6.17328 6.18924 6.22226 6.39037 6.49392 6.57605 6.63099 6.68694 6.76994 6.85455 6.95305 7.06399 7.43926 7.51167 7.74521 7.79663 7.85412 8.21675 8.50985 9.27489 9.91368 10.48058 11.34892 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002184 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.150624 B =12817.600331 C =13569.547807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.090 3.910 6 C -0.099 4.099 7 C 0.601 3.399 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.130 3.870 11 C -0.064 4.064 12 C -0.143 4.143 13 C -0.131 4.131 14 C 0.171 3.829 15 N -0.591 5.591 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.146 3.854 25 C -0.119 4.119 26 N -0.202 5.202 27 N -0.062 5.062 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.204 0.796 36 H 0.410 0.590 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.085 0.915 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.718 -2.186 -9.578 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.066 4.066 6 C -0.238 4.238 7 C 0.384 3.616 8 O -0.424 6.424 9 N -0.355 5.355 10 C 0.006 3.994 11 C -0.064 4.064 12 C -0.200 4.200 13 C -0.170 4.170 14 C 0.045 3.955 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.205 1.205 24 C 0.019 3.981 25 C -0.159 4.159 26 N -0.076 5.076 27 N -0.043 5.043 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.221 0.779 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.038 0.962 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.699 -2.606 -8.850 27.304 hybrid contribution 0.264 1.005 0.072 1.042 sum -25.434 -1.601 -8.778 26.954 Atomic orbital electron populations 1.21705 0.93813 1.02925 1.02345 1.21842 0.96986 0.94540 1.04320 1.22164 0.72541 1.00133 1.05181 1.50583 1.08829 1.35326 1.20026 1.23370 0.90172 0.97181 0.95910 1.21550 0.94683 1.08432 0.99172 1.16751 0.81886 0.79783 0.83141 1.90790 1.86802 1.39053 1.25792 1.45919 1.05028 1.52944 1.31596 1.21611 0.82754 0.99278 0.95710 1.20698 0.93200 0.95829 0.96703 1.21951 1.02391 0.94672 1.01033 1.22261 1.00118 1.00573 0.94073 1.20797 0.82378 0.96654 0.95630 1.44032 1.15088 1.67113 1.05153 1.19197 1.07225 1.19878 0.91668 0.91757 1.25019 0.99349 0.97212 0.98165 1.70035 1.47754 1.28368 1.08538 0.86311 0.80060 0.81029 0.79499 1.21539 1.21857 1.20500 1.20907 0.94527 0.96338 0.86285 1.21994 0.95483 1.00792 0.97634 1.74688 1.12854 1.10017 1.10009 1.81994 0.93367 1.17145 1.11777 0.92232 0.91593 0.92047 0.91013 0.89928 0.88276 0.87705 0.77944 0.75276 0.91661 0.91442 0.93441 0.90701 0.93471 0.92570 0.93447 0.96026 0.89650 0.93713 0.96151 0.92961 0.92945 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 9.91 37.16 0.37 -0.02 16 2 C -0.14 -0.59 6.14 -26.73 -0.16 -0.76 16 3 C 0.12 0.51 6.54 -4.04 -0.03 0.48 16 4 N -0.36 -3.12 3.69 -61.06 -0.23 -3.35 16 5 C 0.09 0.84 11.27 -16.84 -0.19 0.65 16 6 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 7 C 0.60 8.76 7.82 -12.47 -0.10 8.67 16 8 O -0.55 -9.06 16.86 5.29 0.09 -8.97 16 9 N -0.70 -10.12 4.94 -61.35 -0.30 -10.42 16 10 C 0.13 1.92 4.56 -4.04 -0.02 1.90 16 11 C -0.06 -1.03 0.53 -154.46 -0.08 -1.11 16 12 C -0.14 -2.23 7.54 37.16 0.28 -1.95 16 13 C -0.13 -2.47 4.75 -26.61 -0.13 -2.59 16 14 C 0.17 4.02 4.84 -3.71 -0.02 4.00 16 15 N -0.59 -14.62 2.99 -172.32 -0.52 -15.13 16 16 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16 17 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 19 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 20 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 3.00 6.04 -3.71 -0.02 2.98 16 25 C -0.12 -2.03 4.91 -26.61 -0.13 -2.16 16 26 N -0.20 -2.78 12.04 32.84 0.40 -2.39 16 27 N -0.06 -0.76 13.64 60.35 0.82 0.06 16 28 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.16 8.08 -51.93 -0.42 -0.26 16 35 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.41 5.83 5.84 -40.82 -0.24 5.59 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.34 4.98 -51.93 -0.26 1.09 16 41 H 0.05 0.69 6.86 -51.93 -0.36 0.33 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.82 6.82 -51.93 -0.35 0.47 16 44 H 0.02 0.53 6.69 -51.93 -0.35 0.18 16 45 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.02 0.42 6.69 -51.93 -0.35 0.08 16 48 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -33.02 394.51 -7.33 -40.35 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.09 Total: 1.49 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.04 Total: 1.17 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.79 Total: -56.89 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.02 -7.33 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724300318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.140 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds