Wall clock time and date at job start Tue Mar 31 2020 19:01:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53002 * 109.47057 * 2 1
4 4 N 1.46498 * 109.47018 * 179.97438 * 3 2 1
5 5 C 1.34814 * 126.59319 * 124.70626 * 4 3 2
6 6 C 1.36590 * 106.84188 * 180.26788 * 5 4 3
7 7 C 1.47523 * 125.77391 * 180.02562 * 6 5 4
8 8 O 1.21590 * 119.99825 * 359.96547 * 7 6 5
9 9 N 1.34778 * 120.00178 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6
11 11 C 1.53002 * 109.47129 * 179.97438 * 10 9 7
12 12 C 1.53001 * 109.45887 * 60.02650 * 11 10 9
13 13 C 1.53043 * 109.45741 * 300.06866 * 11 10 9
14 14 C 1.53195 * 109.31092 * 178.61506 * 13 11 10
15 15 N 1.46924 * 108.77461 * 54.63161 * 14 13 11
16 16 C 1.36938 * 120.62634 * 126.41134 * 15 14 13
17 17 H 1.08005 * 120.00295 * 207.66513 * 16 15 14
18 18 C 1.38814 * 119.99996 * 27.66662 * 16 15 14
19 19 N 1.31622 * 119.99933 * 17.37050 * 18 16 15
20 20 Si 1.86801 * 120.00204 * 197.36359 * 18 16 15
21 21 H 1.48501 * 109.47109 * 89.99937 * 20 18 16
22 22 H 1.48494 * 109.47414 * 210.00294 * 20 18 16
23 23 H 1.48503 * 109.46853 * 330.00281 * 20 18 16
24 24 C 1.46924 * 118.74235 * 306.39601 * 15 14 13
25 25 C 1.53039 * 109.45923 * 180.02562 * 11 10 9
26 26 N 1.34400 * 108.45933 * 0.02562 * 6 5 4
27 27 N 1.28764 * 109.52033 * 0.02562 * 26 6 5
28 28 H 1.08992 * 109.47296 * 60.00030 * 1 2 3
29 29 H 1.09005 * 109.47014 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46964 * 300.00067 * 1 2 3
31 31 H 1.09000 * 109.46964 * 239.99933 * 2 1 3
32 32 H 1.09006 * 109.46918 * 119.99564 * 2 1 3
33 33 H 1.09000 * 109.47288 * 60.00131 * 3 2 1
34 34 H 1.09003 * 109.46553 * 299.99932 * 3 2 1
35 35 H 1.08003 * 126.57949 * 0.26956 * 5 4 3
36 36 H 0.96997 * 119.99886 * 359.97438 * 9 7 6
37 37 H 1.09000 * 109.47107 * 300.00187 * 10 9 7
38 38 H 1.09003 * 109.46613 * 59.99973 * 10 9 7
39 39 H 1.09000 * 109.47095 * 60.00241 * 12 11 10
40 40 H 1.09000 * 109.46488 * 179.97438 * 12 11 10
41 41 H 1.08993 * 109.47111 * 299.99948 * 12 11 10
42 42 H 1.09001 * 109.49987 * 298.56356 * 13 11 10
43 43 H 1.09000 * 109.49774 * 58.66207 * 13 11 10
44 44 H 1.09006 * 109.58183 * 294.84858 * 14 13 11
45 45 H 1.08996 * 109.58688 * 174.42286 * 14 13 11
46 46 H 0.96998 * 119.99648 * 180.02562 * 19 18 16
47 47 H 1.08997 * 109.58178 * 293.81586 * 24 15 14
48 48 H 1.09005 * 109.70131 * 173.46315 * 24 15 14
49 49 H 1.09007 * 109.49164 * 301.33197 * 25 11 10
50 50 H 1.08994 * 109.49819 * 61.42940 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.3090 2.0587 -0.8890
6 6 5.5944 1.7909 -0.5124
7 6 6.8109 2.2648 -1.1994
8 8 6.7164 2.9578 -2.1940
9 7 8.0269 1.9295 -0.7247
10 6 9.2349 2.3997 -1.4073
11 6 10.4715 1.8823 -0.6698
12 6 10.4553 0.3524 -0.6587
13 6 10.4617 2.4025 0.7694
14 6 11.6828 1.8545 1.5146
15 7 12.8933 2.1991 0.7566
16 6 13.9317 2.8560 1.3612
17 1 14.5853 3.4866 0.7767
18 6 14.1442 2.7114 2.7253
19 7 13.5920 1.7085 3.3747
20 14 15.2142 3.9398 3.6393
21 1 14.3704 5.0542 4.1408
22 1 15.8748 3.2647 4.7851
23 1 16.2479 4.4773 2.7185
24 6 12.9687 1.8253 -0.6623
25 6 11.7332 2.3742 -1.3827
26 7 5.5636 1.0225 0.5899
27 7 4.3405 0.7954 0.9220
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8901
33 1 1.6767 1.9564 0.8900
34 1 1.6766 1.9563 -0.8900
35 1 3.9968 2.6505 -1.7367
36 1 8.1022 1.3769 0.0689
37 1 9.2408 2.0287 -2.4322
38 1 9.2466 3.4897 -1.4153
39 1 10.4617 -0.0185 -1.6836
40 1 11.3365 -0.0164 -0.1337
41 1 9.5566 0.0023 -0.1511
42 1 10.4983 3.4919 0.7628
43 1 9.5515 2.0717 1.2696
44 1 11.6020 0.7709 1.6011
45 1 11.7347 2.2996 2.5082
46 1 13.7402 1.6077 4.3279
47 1 12.9929 0.7394 -0.7532
48 1 13.8693 2.2493 -1.1067
49 1 11.7283 2.0230 -2.4147
50 1 11.7576 3.4637 -1.3688
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001724300318.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:56
Heat of formation + Delta-G solvation = 66.789767 kcal
Electronic energy + Delta-G solvation = -29058.846157 eV
Core-core repulsion = 25123.414490 eV
Total energy + Delta-G solvation = -3935.431667 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.42863 -39.68072 -38.29841 -36.42447 -35.02105 -33.26775 -32.85624 -31.24561
-30.66211 -29.85496 -27.71805 -27.01705 -26.59045 -24.29471 -23.44658 -22.91981
-22.19268 -21.88699 -20.72158 -20.22765 -18.43627 -17.87971 -16.69276 -16.47304
-16.25581 -15.92388 -15.60014 -14.99121 -14.93375 -14.78652 -14.24149 -14.08243
-13.85449 -13.78605 -13.38472 -13.37755 -13.17294 -12.75924 -12.66984 -12.55252
-12.43012 -12.08284 -11.93401 -11.61954 -11.41915 -11.34447 -11.20645 -11.12035
-10.71031 -10.66520 -10.62890 -10.48987 -10.19620 -10.11924 -10.06585 -9.74883
-9.52957 -9.44635 -9.34556 -8.87727 -8.38969 -6.59716 -5.73328 -3.14761
0.89424 1.58048 1.71385 3.21250 3.27488 3.41616 3.48604 3.49464
3.83730 4.01340 4.13838 4.41808 4.54155 4.54961 4.62290 4.73600
4.78904 4.96009 5.09502 5.12987 5.24146 5.32204 5.36954 5.41076
5.46216 5.56808 5.58667 5.61861 5.84769 5.91322 6.01026 6.06075
6.17328 6.18924 6.22226 6.39037 6.49392 6.57605 6.63099 6.68694
6.76994 6.85455 6.95305 7.06399 7.43926 7.51167 7.74521 7.79663
7.85412 8.21675 8.50985 9.27489 9.91368 10.48058 11.34892
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.019560 B = 0.002184 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.150624 B =12817.600331 C =13569.547807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.139 4.139
3 C 0.121 3.879
4 N -0.363 5.363
5 C 0.090 3.910
6 C -0.099 4.099
7 C 0.601 3.399
8 O -0.547 6.547
9 N -0.704 5.704
10 C 0.130 3.870
11 C -0.064 4.064
12 C -0.143 4.143
13 C -0.131 4.131
14 C 0.171 3.829
15 N -0.591 5.591
16 C -0.250 4.250
17 H 0.065 0.935
18 C 0.001 3.999
19 N -0.902 5.902
20 Si 0.901 3.099
21 H -0.288 1.288
22 H -0.292 1.292
23 H -0.280 1.280
24 C 0.146 3.854
25 C -0.119 4.119
26 N -0.202 5.202
27 N -0.062 5.062
28 H 0.059 0.941
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.071 0.929
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.105 0.895
35 H 0.204 0.796
36 H 0.410 0.590
37 H 0.065 0.935
38 H 0.067 0.933
39 H 0.046 0.954
40 H 0.074 0.926
41 H 0.046 0.954
42 H 0.056 0.944
43 H 0.047 0.953
44 H 0.022 0.978
45 H 0.085 0.915
46 H 0.253 0.747
47 H 0.021 0.979
48 H 0.052 0.948
49 H 0.052 0.948
50 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.718 -2.186 -9.578 27.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.177 4.177
3 C 0.000 4.000
4 N -0.148 5.148
5 C -0.066 4.066
6 C -0.238 4.238
7 C 0.384 3.616
8 O -0.424 6.424
9 N -0.355 5.355
10 C 0.006 3.994
11 C -0.064 4.064
12 C -0.200 4.200
13 C -0.170 4.170
14 C 0.045 3.955
15 N -0.314 5.314
16 C -0.380 4.380
17 H 0.082 0.918
18 C -0.197 4.197
19 N -0.547 5.547
20 Si 0.731 3.269
21 H -0.215 1.215
22 H -0.219 1.219
23 H -0.205 1.205
24 C 0.019 3.981
25 C -0.159 4.159
26 N -0.076 5.076
27 N -0.043 5.043
28 H 0.078 0.922
29 H 0.084 0.916
30 H 0.080 0.920
31 H 0.090 0.910
32 H 0.101 0.899
33 H 0.117 0.883
34 H 0.123 0.877
35 H 0.221 0.779
36 H 0.247 0.753
37 H 0.083 0.917
38 H 0.086 0.914
39 H 0.066 0.934
40 H 0.093 0.907
41 H 0.065 0.935
42 H 0.074 0.926
43 H 0.066 0.934
44 H 0.040 0.960
45 H 0.104 0.896
46 H 0.063 0.937
47 H 0.038 0.962
48 H 0.070 0.930
49 H 0.071 0.929
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -25.699 -2.606 -8.850 27.304
hybrid contribution 0.264 1.005 0.072 1.042
sum -25.434 -1.601 -8.778 26.954
Atomic orbital electron populations
1.21705 0.93813 1.02925 1.02345 1.21842 0.96986 0.94540 1.04320
1.22164 0.72541 1.00133 1.05181 1.50583 1.08829 1.35326 1.20026
1.23370 0.90172 0.97181 0.95910 1.21550 0.94683 1.08432 0.99172
1.16751 0.81886 0.79783 0.83141 1.90790 1.86802 1.39053 1.25792
1.45919 1.05028 1.52944 1.31596 1.21611 0.82754 0.99278 0.95710
1.20698 0.93200 0.95829 0.96703 1.21951 1.02391 0.94672 1.01033
1.22261 1.00118 1.00573 0.94073 1.20797 0.82378 0.96654 0.95630
1.44032 1.15088 1.67113 1.05153 1.19197 1.07225 1.19878 0.91668
0.91757 1.25019 0.99349 0.97212 0.98165 1.70035 1.47754 1.28368
1.08538 0.86311 0.80060 0.81029 0.79499 1.21539 1.21857 1.20500
1.20907 0.94527 0.96338 0.86285 1.21994 0.95483 1.00792 0.97634
1.74688 1.12854 1.10017 1.10009 1.81994 0.93367 1.17145 1.11777
0.92232 0.91593 0.92047 0.91013 0.89928 0.88276 0.87705 0.77944
0.75276 0.91661 0.91442 0.93441 0.90701 0.93471 0.92570 0.93447
0.96026 0.89650 0.93713 0.96151 0.92961 0.92945 0.92113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.39 9.91 37.16 0.37 -0.02 16
2 C -0.14 -0.59 6.14 -26.73 -0.16 -0.76 16
3 C 0.12 0.51 6.54 -4.04 -0.03 0.48 16
4 N -0.36 -3.12 3.69 -61.06 -0.23 -3.35 16
5 C 0.09 0.84 11.27 -16.84 -0.19 0.65 16
6 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16
7 C 0.60 8.76 7.82 -12.47 -0.10 8.67 16
8 O -0.55 -9.06 16.86 5.29 0.09 -8.97 16
9 N -0.70 -10.12 4.94 -61.35 -0.30 -10.42 16
10 C 0.13 1.92 4.56 -4.04 -0.02 1.90 16
11 C -0.06 -1.03 0.53 -154.46 -0.08 -1.11 16
12 C -0.14 -2.23 7.54 37.16 0.28 -1.95 16
13 C -0.13 -2.47 4.75 -26.61 -0.13 -2.59 16
14 C 0.17 4.02 4.84 -3.71 -0.02 4.00 16
15 N -0.59 -14.62 2.99 -172.32 -0.52 -15.13 16
16 C -0.25 -6.87 9.59 -15.06 -0.14 -7.01 16
17 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16
18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16
19 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16
20 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16
21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
24 C 0.15 3.00 6.04 -3.71 -0.02 2.98 16
25 C -0.12 -2.03 4.91 -26.61 -0.13 -2.16 16
26 N -0.20 -2.78 12.04 32.84 0.40 -2.39 16
27 N -0.06 -0.76 13.64 60.35 0.82 0.06 16
28 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16
29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16
31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16
34 H 0.10 0.16 8.08 -51.93 -0.42 -0.26 16
35 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16
36 H 0.41 5.83 5.84 -40.82 -0.24 5.59 16
37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.07 1.34 4.98 -51.93 -0.26 1.09 16
41 H 0.05 0.69 6.86 -51.93 -0.36 0.33 16
42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
43 H 0.05 0.82 6.82 -51.93 -0.35 0.47 16
44 H 0.02 0.53 6.69 -51.93 -0.35 0.18 16
45 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16
46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
47 H 0.02 0.42 6.69 -51.93 -0.35 0.08 16
48 H 0.05 1.07 7.94 -51.93 -0.41 0.65 16
49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
LS Contribution 394.51 15.07 5.95 5.95
Total: -1.00 -33.02 394.51 -7.33 -40.35
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -8.09 Total: 1.49 kcal
Atomic # 6 Polarization: 2.21 SS G_CDS: -1.04 Total: 1.17 kcal
Atomic # 7 Polarization: -57.68 SS G_CDS: 0.79 Total: -56.89 kcal
Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.02 -7.33 -40.35 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724300318.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.140 kcal
(2) G-P(sol) polarization free energy of solvation -33.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds