Wall clock time and date at job start Tue Mar 31 2020 19:01:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53002 * 109.47057 * 2 1
4 4 N 1.46498 * 109.47018 * 179.97438 * 3 2 1
5 5 C 1.34814 * 126.59319 * 124.70626 * 4 3 2
6 6 C 1.36590 * 106.84188 * 180.26788 * 5 4 3
7 7 C 1.47523 * 125.77391 * 180.02562 * 6 5 4
8 8 O 1.21590 * 119.99825 * 359.96547 * 7 6 5
9 9 N 1.34778 * 120.00178 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6
11 11 C 1.53002 * 109.47129 * 179.97438 * 10 9 7
12 12 C 1.53001 * 109.45887 * 60.02650 * 11 10 9
13 13 C 1.53043 * 109.45741 * 300.06866 * 11 10 9
14 14 C 1.53195 * 109.31092 * 178.61506 * 13 11 10
15 15 N 1.46924 * 108.77461 * 54.63161 * 14 13 11
16 16 C 1.36938 * 120.62634 * 126.41134 * 15 14 13
17 17 H 1.08005 * 120.00295 * 207.66513 * 16 15 14
18 18 C 1.38814 * 119.99996 * 27.66662 * 16 15 14
19 19 N 1.31622 * 119.99933 * 17.37050 * 18 16 15
20 20 Si 1.86801 * 120.00204 * 197.36359 * 18 16 15
21 21 H 1.48501 * 109.47109 * 89.99937 * 20 18 16
22 22 H 1.48494 * 109.47414 * 210.00294 * 20 18 16
23 23 H 1.48503 * 109.46853 * 330.00281 * 20 18 16
24 24 C 1.46924 * 118.74235 * 306.39601 * 15 14 13
25 25 C 1.53039 * 109.45923 * 180.02562 * 11 10 9
26 26 N 1.34400 * 108.45933 * 0.02562 * 6 5 4
27 27 N 1.28764 * 109.52033 * 0.02562 * 26 6 5
28 28 H 1.08992 * 109.47296 * 60.00030 * 1 2 3
29 29 H 1.09005 * 109.47014 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46964 * 300.00067 * 1 2 3
31 31 H 1.09000 * 109.46964 * 239.99933 * 2 1 3
32 32 H 1.09006 * 109.46918 * 119.99564 * 2 1 3
33 33 H 1.09000 * 109.47288 * 60.00131 * 3 2 1
34 34 H 1.09003 * 109.46553 * 299.99932 * 3 2 1
35 35 H 1.08003 * 126.57949 * 0.26956 * 5 4 3
36 36 H 0.96997 * 119.99886 * 359.97438 * 9 7 6
37 37 H 1.09000 * 109.47107 * 300.00187 * 10 9 7
38 38 H 1.09003 * 109.46613 * 59.99973 * 10 9 7
39 39 H 1.09000 * 109.47095 * 60.00241 * 12 11 10
40 40 H 1.09000 * 109.46488 * 179.97438 * 12 11 10
41 41 H 1.08993 * 109.47111 * 299.99948 * 12 11 10
42 42 H 1.09001 * 109.49987 * 298.56356 * 13 11 10
43 43 H 1.09000 * 109.49774 * 58.66207 * 13 11 10
44 44 H 1.09006 * 109.58183 * 294.84858 * 14 13 11
45 45 H 1.08996 * 109.58688 * 174.42286 * 14 13 11
46 46 H 0.96998 * 119.99648 * 180.02562 * 19 18 16
47 47 H 1.08997 * 109.58178 * 293.81586 * 24 15 14
48 48 H 1.09005 * 109.70131 * 173.46315 * 24 15 14
49 49 H 1.09007 * 109.49164 * 301.33197 * 25 11 10
50 50 H 1.08994 * 109.49819 * 61.42940 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.3090 2.0587 -0.8890
6 6 5.5944 1.7909 -0.5124
7 6 6.8109 2.2648 -1.1994
8 8 6.7164 2.9578 -2.1940
9 7 8.0269 1.9295 -0.7247
10 6 9.2349 2.3997 -1.4073
11 6 10.4715 1.8823 -0.6698
12 6 10.4553 0.3524 -0.6587
13 6 10.4617 2.4025 0.7694
14 6 11.6828 1.8545 1.5146
15 7 12.8933 2.1991 0.7566
16 6 13.9317 2.8560 1.3612
17 1 14.5853 3.4866 0.7767
18 6 14.1442 2.7114 2.7253
19 7 13.5920 1.7085 3.3747
20 14 15.2142 3.9398 3.6393
21 1 14.3704 5.0542 4.1408
22 1 15.8748 3.2647 4.7851
23 1 16.2479 4.4773 2.7185
24 6 12.9687 1.8253 -0.6623
25 6 11.7332 2.3742 -1.3827
26 7 5.5636 1.0225 0.5899
27 7 4.3405 0.7954 0.9220
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8901
33 1 1.6767 1.9564 0.8900
34 1 1.6766 1.9563 -0.8900
35 1 3.9968 2.6505 -1.7367
36 1 8.1022 1.3769 0.0689
37 1 9.2408 2.0287 -2.4322
38 1 9.2466 3.4897 -1.4153
39 1 10.4617 -0.0185 -1.6836
40 1 11.3365 -0.0164 -0.1337
41 1 9.5566 0.0023 -0.1511
42 1 10.4983 3.4919 0.7628
43 1 9.5515 2.0717 1.2696
44 1 11.6020 0.7709 1.6011
45 1 11.7347 2.2996 2.5082
46 1 13.7402 1.6077 4.3279
47 1 12.9929 0.7394 -0.7532
48 1 13.8693 2.2493 -1.1067
49 1 11.7283 2.0230 -2.4147
50 1 11.7576 3.4637 -1.3688
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724300318.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:55
Heat of formation + Delta-G solvation = 45.071627 kcal
Electronic energy + Delta-G solvation = -29059.787926 eV
Core-core repulsion = 25123.414490 eV
Total energy + Delta-G solvation = -3936.373436 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.24061 -40.93318 -39.68727 -36.92355 -36.58807 -34.68162 -33.58552 -32.73264
-31.83865 -31.55359 -28.78016 -28.25823 -27.65074 -25.93083 -24.48588 -23.87668
-23.56842 -22.53221 -22.26928 -21.22059 -19.67069 -19.21485 -18.17960 -17.32122
-17.21433 -17.04413 -16.77060 -16.34805 -15.85332 -15.77737 -15.65338 -15.44451
-15.07837 -15.00718 -14.89856 -14.42861 -14.41214 -14.01794 -13.65203 -13.40636
-13.21572 -13.12548 -12.96200 -12.94524 -12.66389 -12.56357 -12.50696 -12.32001
-12.25498 -12.19844 -11.87903 -11.78075 -11.74741 -11.44285 -11.32851 -11.27864
-11.04724 -11.00939 -10.47777 -10.41938 -9.99949 -8.61627 -7.84100 -5.27967
0.15461 0.61115 1.11379 1.46351 1.48171 1.56473 2.16114 2.24359
2.52864 3.18995 3.29288 3.36195 3.74348 3.77701 3.82984 3.84826
3.89022 3.95395 3.98896 4.16319 4.23040 4.44007 4.46535 4.52636
4.55888 4.63571 4.69142 4.75726 4.79740 4.84331 4.86917 4.87695
4.98381 5.10885 5.11426 5.15693 5.17742 5.28258 5.32785 5.34043
5.41591 5.43170 5.50452 5.51464 5.58718 5.69133 5.86318 6.41311
6.43058 6.89363 7.12340 7.18892 7.92041 8.42825 9.21547
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.019560 B = 0.002184 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.150624 B =12817.600331 C =13569.547807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.135 4.135
3 C 0.110 3.890
4 N -0.348 5.348
5 C 0.112 3.888
6 C -0.127 4.127
7 C 0.604 3.396
8 O -0.569 6.569
9 N -0.705 5.705
10 C 0.140 3.860
11 C -0.054 4.054
12 C -0.137 4.137
13 C -0.117 4.117
14 C 0.180 3.820
15 N -0.609 5.609
16 C -0.259 4.259
17 H 0.065 0.935
18 C -0.053 4.053
19 N -0.934 5.934
20 Si 0.963 3.037
21 H -0.288 1.288
22 H -0.296 1.296
23 H -0.268 1.268
24 C 0.141 3.859
25 C -0.110 4.110
26 N -0.230 5.230
27 N -0.089 5.089
28 H 0.073 0.927
29 H 0.061 0.939
30 H 0.066 0.934
31 H 0.064 0.936
32 H 0.060 0.940
33 H 0.112 0.888
34 H 0.143 0.857
35 H 0.240 0.760
36 H 0.410 0.590
37 H 0.079 0.921
38 H 0.062 0.938
39 H 0.069 0.931
40 H 0.047 0.953
41 H 0.054 0.946
42 H 0.045 0.955
43 H 0.060 0.940
44 H 0.005 0.995
45 H 0.046 0.954
46 H 0.248 0.752
47 H 0.021 0.979
48 H 0.051 0.949
49 H 0.086 0.914
50 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.945 -1.300 -11.643 30.302
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.173 4.173
3 C -0.008 4.008
4 N -0.133 5.133
5 C -0.047 4.047
6 C -0.267 4.267
7 C 0.389 3.611
8 O -0.448 6.448
9 N -0.356 5.356
10 C 0.017 3.983
11 C -0.055 4.055
12 C -0.194 4.194
13 C -0.157 4.157
14 C 0.054 3.946
15 N -0.332 5.332
16 C -0.389 4.389
17 H 0.083 0.917
18 C -0.248 4.248
19 N -0.580 5.580
20 Si 0.792 3.208
21 H -0.215 1.215
22 H -0.223 1.223
23 H -0.193 1.193
24 C 0.016 3.984
25 C -0.149 4.149
26 N -0.103 5.103
27 N -0.069 5.069
28 H 0.092 0.908
29 H 0.080 0.920
30 H 0.085 0.915
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.130 0.870
34 H 0.161 0.839
35 H 0.256 0.744
36 H 0.247 0.753
37 H 0.097 0.903
38 H 0.080 0.920
39 H 0.088 0.912
40 H 0.066 0.934
41 H 0.073 0.927
42 H 0.064 0.936
43 H 0.078 0.922
44 H 0.023 0.977
45 H 0.064 0.936
46 H 0.057 0.943
47 H 0.039 0.961
48 H 0.069 0.931
49 H 0.105 0.895
50 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -27.953 -1.733 -10.925 30.062
hybrid contribution 0.863 0.692 0.676 1.297
sum -27.090 -1.041 -10.248 28.983
Atomic orbital electron populations
1.21678 0.92247 1.03063 1.03333 1.21787 0.98210 0.94396 1.02935
1.22666 0.69909 1.00528 1.07727 1.50889 1.10138 1.33628 1.18640
1.23883 0.88963 0.95863 0.95950 1.21515 0.95297 1.10051 0.99883
1.16922 0.82239 0.79172 0.82794 1.90769 1.87161 1.40103 1.26749
1.45906 1.05103 1.52981 1.31595 1.21422 0.82003 0.98884 0.95969
1.20573 0.93942 0.96241 0.94738 1.21870 1.01468 0.93936 1.02137
1.22047 0.98228 0.99634 0.95744 1.20562 0.84128 0.95390 0.94508
1.44285 1.14909 1.67244 1.06783 1.19521 1.07547 1.19727 0.92121
0.91727 1.25752 1.01181 0.98853 0.99023 1.70188 1.49483 1.30043
1.08297 0.85318 0.78627 0.78719 0.78116 1.21516 1.22261 1.19305
1.21070 0.96483 0.96521 0.84329 1.21875 0.93727 1.00383 0.98928
1.74657 1.13877 1.10922 1.10844 1.81912 0.93445 1.18384 1.13186
0.90757 0.91953 0.91509 0.91726 0.92069 0.86964 0.83925 0.74383
0.75273 0.90306 0.91964 0.91204 0.93429 0.92680 0.93619 0.92184
0.97717 0.93584 0.94280 0.96083 0.93089 0.89549 0.92561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.42 9.91 71.98 0.71 0.29 16
2 C -0.13 -0.93 6.14 30.60 0.19 -0.74 16
3 C 0.11 0.60 6.54 86.38 0.56 1.17 16
4 N -0.35 -5.24 3.69 -347.10 -1.28 -6.53 16
5 C 0.11 1.78 11.27 83.85 0.95 2.73 16
6 C -0.13 -3.09 6.99 40.81 0.29 -2.80 16
7 C 0.60 16.74 7.82 86.69 0.68 17.42 16
8 O -0.57 -17.73 16.86 -4.00 -0.07 -17.80 16
9 N -0.71 -19.37 4.94 -466.27 -2.31 -21.67 16
10 C 0.14 3.88 4.56 86.38 0.39 4.27 16
11 C -0.05 -1.69 0.53 -52.15 -0.03 -1.72 16
12 C -0.14 -4.09 7.54 71.98 0.54 -3.55 16
13 C -0.12 -4.45 4.75 30.67 0.15 -4.30 16
14 C 0.18 8.74 4.84 86.36 0.42 9.16 16
15 N -0.61 -30.69 2.99 -699.09 -2.09 -32.78 16
16 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16
17 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16
18 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16
19 N -0.93 -56.33 11.19 21.65 0.24 -56.09 16
20 Si 0.96 45.99 29.59 68.60 2.03 48.02 16
21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16
22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
24 C 0.14 5.76 6.04 86.36 0.52 6.28 16
25 C -0.11 -3.54 4.91 30.67 0.15 -3.39 16
26 N -0.23 -6.25 12.04 -50.00 -0.60 -6.85 16
27 N -0.09 -2.12 13.64 37.02 0.51 -1.62 16
28 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16
29 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16
30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16
31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16
33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16
34 H 0.14 -0.23 8.08 -2.39 -0.02 -0.25 16
35 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16
36 H 0.41 11.35 5.84 -92.71 -0.54 10.81 16
37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
40 H 0.05 1.70 4.98 -2.39 -0.01 1.68 16
41 H 0.05 1.55 6.86 -2.39 -0.02 1.53 16
42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
43 H 0.06 2.10 6.82 -2.39 -0.02 2.09 16
44 H 0.00 0.25 6.69 -2.38 -0.02 0.23 16
45 H 0.05 2.59 6.04 -2.39 -0.01 2.57 16
46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
47 H 0.02 0.87 6.69 -2.39 -0.02 0.85 16
48 H 0.05 2.06 7.94 -2.38 -0.02 2.04 16
49 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16
50 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16
Total: -1.00 -74.15 394.51 3.57 -70.58
By element:
Atomic # 1 Polarization: 15.77 SS G_CDS: 0.40 Total: 16.17 kcal
Atomic # 6 Polarization: 1.82 SS G_CDS: 6.74 Total: 8.56 kcal
Atomic # 7 Polarization: -120.00 SS G_CDS: -5.53 Total: -125.53 kcal
Atomic # 8 Polarization: -17.73 SS G_CDS: -0.07 Total: -17.80 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal
Total: -74.15 3.57 -70.58 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724300318.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.650 kcal
(2) G-P(sol) polarization free energy of solvation -74.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds