Wall clock time and date at job start Tue Mar 31 2020 19:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 N 1.46498 * 109.47018 * 179.97438 * 3 2 1 5 5 C 1.34814 * 126.59319 * 124.70626 * 4 3 2 6 6 C 1.36590 * 106.84188 * 180.26788 * 5 4 3 7 7 C 1.47523 * 125.77391 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99825 * 359.96547 * 7 6 5 9 9 N 1.34778 * 120.00178 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00009 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.45887 * 60.02650 * 11 10 9 13 13 C 1.53043 * 109.45741 * 300.06866 * 11 10 9 14 14 C 1.53195 * 109.31092 * 178.61506 * 13 11 10 15 15 N 1.46924 * 108.77461 * 54.63161 * 14 13 11 16 16 C 1.36938 * 120.62634 * 126.41134 * 15 14 13 17 17 H 1.08005 * 120.00295 * 207.66513 * 16 15 14 18 18 C 1.38814 * 119.99996 * 27.66662 * 16 15 14 19 19 N 1.31622 * 119.99933 * 17.37050 * 18 16 15 20 20 Si 1.86801 * 120.00204 * 197.36359 * 18 16 15 21 21 H 1.48501 * 109.47109 * 89.99937 * 20 18 16 22 22 H 1.48494 * 109.47414 * 210.00294 * 20 18 16 23 23 H 1.48503 * 109.46853 * 330.00281 * 20 18 16 24 24 C 1.46924 * 118.74235 * 306.39601 * 15 14 13 25 25 C 1.53039 * 109.45923 * 180.02562 * 11 10 9 26 26 N 1.34400 * 108.45933 * 0.02562 * 6 5 4 27 27 N 1.28764 * 109.52033 * 0.02562 * 26 6 5 28 28 H 1.08992 * 109.47296 * 60.00030 * 1 2 3 29 29 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46964 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.46964 * 239.99933 * 2 1 3 32 32 H 1.09006 * 109.46918 * 119.99564 * 2 1 3 33 33 H 1.09000 * 109.47288 * 60.00131 * 3 2 1 34 34 H 1.09003 * 109.46553 * 299.99932 * 3 2 1 35 35 H 1.08003 * 126.57949 * 0.26956 * 5 4 3 36 36 H 0.96997 * 119.99886 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47107 * 300.00187 * 10 9 7 38 38 H 1.09003 * 109.46613 * 59.99973 * 10 9 7 39 39 H 1.09000 * 109.47095 * 60.00241 * 12 11 10 40 40 H 1.09000 * 109.46488 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47111 * 299.99948 * 12 11 10 42 42 H 1.09001 * 109.49987 * 298.56356 * 13 11 10 43 43 H 1.09000 * 109.49774 * 58.66207 * 13 11 10 44 44 H 1.09006 * 109.58183 * 294.84858 * 14 13 11 45 45 H 1.08996 * 109.58688 * 174.42286 * 14 13 11 46 46 H 0.96998 * 119.99648 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.58178 * 293.81586 * 24 15 14 48 48 H 1.09005 * 109.70131 * 173.46315 * 24 15 14 49 49 H 1.09007 * 109.49164 * 301.33197 * 25 11 10 50 50 H 1.08994 * 109.49819 * 61.42940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0587 -0.8890 6 6 5.5944 1.7909 -0.5124 7 6 6.8109 2.2648 -1.1994 8 8 6.7164 2.9578 -2.1940 9 7 8.0269 1.9295 -0.7247 10 6 9.2349 2.3997 -1.4073 11 6 10.4715 1.8823 -0.6698 12 6 10.4553 0.3524 -0.6587 13 6 10.4617 2.4025 0.7694 14 6 11.6828 1.8545 1.5146 15 7 12.8933 2.1991 0.7566 16 6 13.9317 2.8560 1.3612 17 1 14.5853 3.4866 0.7767 18 6 14.1442 2.7114 2.7253 19 7 13.5920 1.7085 3.3747 20 14 15.2142 3.9398 3.6393 21 1 14.3704 5.0542 4.1408 22 1 15.8748 3.2647 4.7851 23 1 16.2479 4.4773 2.7185 24 6 12.9687 1.8253 -0.6623 25 6 11.7332 2.3742 -1.3827 26 7 5.5636 1.0225 0.5899 27 7 4.3405 0.7954 0.9220 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9968 2.6505 -1.7367 36 1 8.1022 1.3769 0.0689 37 1 9.2408 2.0287 -2.4322 38 1 9.2466 3.4897 -1.4153 39 1 10.4617 -0.0185 -1.6836 40 1 11.3365 -0.0164 -0.1337 41 1 9.5566 0.0023 -0.1511 42 1 10.4983 3.4919 0.7628 43 1 9.5515 2.0717 1.2696 44 1 11.6020 0.7709 1.6011 45 1 11.7347 2.2996 2.5082 46 1 13.7402 1.6077 4.3279 47 1 12.9929 0.7394 -0.7532 48 1 13.8693 2.2493 -1.1067 49 1 11.7283 2.0230 -2.4147 50 1 11.7576 3.4637 -1.3688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724300318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:55 Heat of formation + Delta-G solvation = 45.071627 kcal Electronic energy + Delta-G solvation = -29059.787926 eV Core-core repulsion = 25123.414490 eV Total energy + Delta-G solvation = -3936.373436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.24061 -40.93318 -39.68727 -36.92355 -36.58807 -34.68162 -33.58552 -32.73264 -31.83865 -31.55359 -28.78016 -28.25823 -27.65074 -25.93083 -24.48588 -23.87668 -23.56842 -22.53221 -22.26928 -21.22059 -19.67069 -19.21485 -18.17960 -17.32122 -17.21433 -17.04413 -16.77060 -16.34805 -15.85332 -15.77737 -15.65338 -15.44451 -15.07837 -15.00718 -14.89856 -14.42861 -14.41214 -14.01794 -13.65203 -13.40636 -13.21572 -13.12548 -12.96200 -12.94524 -12.66389 -12.56357 -12.50696 -12.32001 -12.25498 -12.19844 -11.87903 -11.78075 -11.74741 -11.44285 -11.32851 -11.27864 -11.04724 -11.00939 -10.47777 -10.41938 -9.99949 -8.61627 -7.84100 -5.27967 0.15461 0.61115 1.11379 1.46351 1.48171 1.56473 2.16114 2.24359 2.52864 3.18995 3.29288 3.36195 3.74348 3.77701 3.82984 3.84826 3.89022 3.95395 3.98896 4.16319 4.23040 4.44007 4.46535 4.52636 4.55888 4.63571 4.69142 4.75726 4.79740 4.84331 4.86917 4.87695 4.98381 5.10885 5.11426 5.15693 5.17742 5.28258 5.32785 5.34043 5.41591 5.43170 5.50452 5.51464 5.58718 5.69133 5.86318 6.41311 6.43058 6.89363 7.12340 7.18892 7.92041 8.42825 9.21547 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002184 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.150624 B =12817.600331 C =13569.547807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.112 3.888 6 C -0.127 4.127 7 C 0.604 3.396 8 O -0.569 6.569 9 N -0.705 5.705 10 C 0.140 3.860 11 C -0.054 4.054 12 C -0.137 4.137 13 C -0.117 4.117 14 C 0.180 3.820 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.141 3.859 25 C -0.110 4.110 26 N -0.230 5.230 27 N -0.089 5.089 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.410 0.590 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.005 0.995 45 H 0.046 0.954 46 H 0.248 0.752 47 H 0.021 0.979 48 H 0.051 0.949 49 H 0.086 0.914 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.945 -1.300 -11.643 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.047 4.047 6 C -0.267 4.267 7 C 0.389 3.611 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.017 3.983 11 C -0.055 4.055 12 C -0.194 4.194 13 C -0.157 4.157 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.193 1.193 24 C 0.016 3.984 25 C -0.149 4.149 26 N -0.103 5.103 27 N -0.069 5.069 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.256 0.744 36 H 0.247 0.753 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.105 0.895 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.953 -1.733 -10.925 30.062 hybrid contribution 0.863 0.692 0.676 1.297 sum -27.090 -1.041 -10.248 28.983 Atomic orbital electron populations 1.21678 0.92247 1.03063 1.03333 1.21787 0.98210 0.94396 1.02935 1.22666 0.69909 1.00528 1.07727 1.50889 1.10138 1.33628 1.18640 1.23883 0.88963 0.95863 0.95950 1.21515 0.95297 1.10051 0.99883 1.16922 0.82239 0.79172 0.82794 1.90769 1.87161 1.40103 1.26749 1.45906 1.05103 1.52981 1.31595 1.21422 0.82003 0.98884 0.95969 1.20573 0.93942 0.96241 0.94738 1.21870 1.01468 0.93936 1.02137 1.22047 0.98228 0.99634 0.95744 1.20562 0.84128 0.95390 0.94508 1.44285 1.14909 1.67244 1.06783 1.19521 1.07547 1.19727 0.92121 0.91727 1.25752 1.01181 0.98853 0.99023 1.70188 1.49483 1.30043 1.08297 0.85318 0.78627 0.78719 0.78116 1.21516 1.22261 1.19305 1.21070 0.96483 0.96521 0.84329 1.21875 0.93727 1.00383 0.98928 1.74657 1.13877 1.10922 1.10844 1.81912 0.93445 1.18384 1.13186 0.90757 0.91953 0.91509 0.91726 0.92069 0.86964 0.83925 0.74383 0.75273 0.90306 0.91964 0.91204 0.93429 0.92680 0.93619 0.92184 0.97717 0.93584 0.94280 0.96083 0.93089 0.89549 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 71.98 0.71 0.29 16 2 C -0.13 -0.93 6.14 30.60 0.19 -0.74 16 3 C 0.11 0.60 6.54 86.38 0.56 1.17 16 4 N -0.35 -5.24 3.69 -347.10 -1.28 -6.53 16 5 C 0.11 1.78 11.27 83.85 0.95 2.73 16 6 C -0.13 -3.09 6.99 40.81 0.29 -2.80 16 7 C 0.60 16.74 7.82 86.69 0.68 17.42 16 8 O -0.57 -17.73 16.86 -4.00 -0.07 -17.80 16 9 N -0.71 -19.37 4.94 -466.27 -2.31 -21.67 16 10 C 0.14 3.88 4.56 86.38 0.39 4.27 16 11 C -0.05 -1.69 0.53 -52.15 -0.03 -1.72 16 12 C -0.14 -4.09 7.54 71.98 0.54 -3.55 16 13 C -0.12 -4.45 4.75 30.67 0.15 -4.30 16 14 C 0.18 8.74 4.84 86.36 0.42 9.16 16 15 N -0.61 -30.69 2.99 -699.09 -2.09 -32.78 16 16 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16 17 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 19 N -0.93 -56.33 11.19 21.65 0.24 -56.09 16 20 Si 0.96 45.99 29.59 68.60 2.03 48.02 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 C 0.14 5.76 6.04 86.36 0.52 6.28 16 25 C -0.11 -3.54 4.91 30.67 0.15 -3.39 16 26 N -0.23 -6.25 12.04 -50.00 -0.60 -6.85 16 27 N -0.09 -2.12 13.64 37.02 0.51 -1.62 16 28 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.14 -0.23 8.08 -2.39 -0.02 -0.25 16 35 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.41 11.35 5.84 -92.71 -0.54 10.81 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.70 4.98 -2.39 -0.01 1.68 16 41 H 0.05 1.55 6.86 -2.39 -0.02 1.53 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 2.10 6.82 -2.39 -0.02 2.09 16 44 H 0.00 0.25 6.69 -2.38 -0.02 0.23 16 45 H 0.05 2.59 6.04 -2.39 -0.01 2.57 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.02 0.87 6.69 -2.39 -0.02 0.85 16 48 H 0.05 2.06 7.94 -2.38 -0.02 2.04 16 49 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 50 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -74.15 394.51 3.57 -70.58 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.40 Total: 16.17 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.74 Total: 8.56 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.53 Total: -125.53 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.07 Total: -17.80 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.15 3.57 -70.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724300318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.650 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds