Wall clock time and date at job start Tue Mar 31 2020 18:33:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.52996 * 109.46572 * 2 1
4 4 C 1.53003 * 109.46972 * 240.00567 * 2 1 3
5 5 N 1.46493 * 109.46895 * 120.00125 * 2 1 3
6 6 C 1.34583 * 125.74848 * 75.00356 * 5 2 1
7 7 N 1.30874 * 107.62758 * 179.97438 * 6 5 2
8 8 C 1.34552 * 107.26325 * 0.02562 * 7 6 5
9 9 C 1.47879 * 126.04497 * 179.97438 * 8 7 6
10 10 O 1.21550 * 119.99869 * 180.02562 * 9 8 7
11 11 N 1.34775 * 119.99668 * 0.02562 * 9 8 7
12 12 C 1.47024 * 125.65261 * 359.69561 * 11 9 8
13 13 C 1.54311 * 107.27761 * 180.96878 * 12 11 9
14 14 C 1.55163 * 102.86572 * 22.52580 * 13 12 11
15 15 H 1.08998 * 111.03487 * 82.38780 * 14 13 12
16 16 C 1.52993 * 111.00452 * 206.23217 * 14 13 12
17 17 C 1.53007 * 109.47162 * 178.64888 * 16 14 13
18 18 N 1.46501 * 109.47241 * 179.97438 * 17 16 14
19 19 C 1.36933 * 119.99633 * 179.97438 * 18 17 16
20 20 H 1.08003 * 120.00654 * 0.02562 * 19 18 17
21 21 C 1.38814 * 119.99920 * 179.97438 * 19 18 17
22 22 N 1.31623 * 119.99477 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 120.00175 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47059 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.47194 * 120.00500 * 23 21 19
26 26 H 1.48498 * 109.46894 * 240.00000 * 23 21 19
27 27 C 1.47434 * 125.64558 * 180.02562 * 11 9 8
28 28 N 1.28855 * 125.74897 * 254.99498 * 5 2 1
29 29 H 1.08992 * 109.47174 * 299.99800 * 1 2 3
30 30 H 1.08998 * 109.47205 * 60.00106 * 1 2 3
31 31 H 1.08998 * 109.46743 * 179.97438 * 1 2 3
32 32 H 1.09009 * 109.46515 * 180.02562 * 3 2 1
33 33 H 1.09001 * 109.47750 * 299.99986 * 3 2 1
34 34 H 1.09003 * 109.47542 * 60.00611 * 3 2 1
35 35 H 1.09000 * 109.46702 * 299.99755 * 4 2 1
36 36 H 1.08998 * 109.47706 * 59.99633 * 4 2 1
37 37 H 1.09000 * 109.46842 * 180.02562 * 4 2 1
38 38 H 1.07997 * 126.18985 * 359.95974 * 6 5 2
39 39 H 1.09000 * 109.88061 * 300.51470 * 12 11 9
40 40 H 1.08998 * 109.88255 * 61.67837 * 12 11 9
41 41 H 1.09001 * 110.92615 * 264.11384 * 13 12 11
42 42 H 1.09002 * 110.74863 * 140.85419 * 13 12 11
43 43 H 1.08998 * 109.47518 * 298.64407 * 16 14 13
44 44 H 1.09004 * 109.47777 * 58.64960 * 16 14 13
45 45 H 1.09007 * 109.46772 * 300.00149 * 17 16 14
46 46 H 1.08994 * 109.46692 * 59.99422 * 17 16 14
47 47 H 0.96995 * 119.99855 * 359.97438 * 18 17 16
48 48 H 0.97009 * 119.99451 * 179.97438 * 22 21 19
49 49 H 1.09000 * 110.36678 * 274.67679 * 27 11 9
50 50 H 1.09002 * 110.36459 * 36.99800 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7211 -1.2493
5 7 2.0184 -0.6906 1.1961
6 6 2.0139 -2.0221 1.3921
7 7 2.5283 -2.2504 2.5737
8 6 2.8496 -1.0575 3.1066
9 6 3.4603 -0.8339 4.4348
10 8 3.7054 0.2965 4.8084
11 7 3.7451 -1.8835 5.2308
12 6 3.4965 -3.2961 4.9080
13 6 3.9582 -4.1315 6.1205
14 6 3.9087 -3.1070 7.2848
15 1 2.8971 -3.0117 7.6793
16 6 4.8927 -3.4879 8.3926
17 6 4.8396 -2.4386 9.5050
18 7 5.7814 -2.8037 10.5661
19 6 5.9086 -2.0069 11.6724
20 1 5.3144 -1.1096 11.7631
21 6 6.8006 -2.3530 12.6782
22 7 7.5244 -3.4468 12.5680
23 14 6.9737 -1.2665 14.1878
24 1 6.0552 -0.1057 14.0701
25 1 6.6296 -2.0484 15.4024
26 1 8.3737 -0.7822 14.2911
27 6 4.3513 -1.8048 6.5724
28 7 2.5245 -0.1256 2.2377
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 3.1300 1.4425 -0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6767 1.9564 0.8900
35 1 1.6767 -1.7488 -1.2493
36 1 1.6767 -0.2073 -2.1393
37 1 3.1301 -0.7215 -1.2491
38 1 1.6513 -2.7674 0.6998
39 1 2.4328 -3.4540 4.7301
40 1 4.0684 -3.5808 4.0248
41 1 4.9733 -4.5009 5.9749
42 1 3.2713 -4.9576 6.3044
43 1 4.6226 -4.4624 8.7993
44 1 5.9019 -3.5322 7.9829
45 1 5.1097 -1.4640 9.0983
46 1 3.8305 -2.3943 9.9146
47 1 6.3148 -3.6097 10.4849
48 1 8.1481 -3.6885 13.2706
49 1 5.4379 -1.7648 6.4960
50 1 3.9755 -0.9329 7.1079
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001724717550.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:33:01
Heat of formation + Delta-G solvation = 65.798590 kcal
Electronic energy + Delta-G solvation = -28555.088292 eV
Core-core repulsion = 24619.613645 eV
Total energy + Delta-G solvation = -3935.474647 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.80926 -39.94643 -37.96433 -37.52440 -35.07520 -33.25125 -32.62938 -31.37046
-30.84106 -29.39916 -28.24083 -28.11927 -27.34209 -25.19212 -23.60451 -23.36864
-22.66232 -21.17709 -20.55737 -20.09336 -19.64050 -17.68955 -17.06470 -16.94834
-16.83393 -16.25754 -15.67187 -15.11270 -14.86788 -14.65815 -14.56045 -14.46732
-13.79829 -13.48459 -13.44189 -13.25412 -13.15086 -12.99759 -12.96850 -12.76911
-12.58581 -12.51254 -12.41044 -12.08428 -11.99908 -11.65106 -11.58824 -11.23642
-10.98147 -10.78678 -10.70416 -10.63650 -10.52048 -10.37126 -10.24957 -10.21392
-9.89207 -9.82162 -9.60597 -8.80147 -8.61997 -6.84190 -5.69902 -2.97892
1.18931 1.74005 1.85388 2.79298 3.27373 3.48822 3.54514 3.56965
3.68067 3.79752 3.94992 4.06102 4.24850 4.43501 4.63314 4.67237
4.70693 4.75268 4.83622 4.89275 4.94413 4.96287 5.03115 5.12034
5.23842 5.32879 5.41417 5.44380 5.59264 5.61175 5.64685 5.71235
5.76495 5.84117 5.92010 6.00033 6.01853 6.04997 6.16752 6.20692
6.29240 6.34388 6.45140 6.49758 6.93305 6.97262 7.39532 7.72002
7.78153 8.10604 8.49550 9.60534 10.19441 10.53982 11.53258
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.028774 B = 0.001817 C = 0.001742
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.857802 B =15404.153221 C =16069.773863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.166 3.834
3 C -0.150 4.150
4 C -0.160 4.160
5 N -0.293 5.293
6 C 0.186 3.814
7 N -0.479 5.479
8 C 0.145 3.855
9 C 0.626 3.374
10 O -0.520 6.520
11 N -0.600 5.600
12 C 0.114 3.886
13 C -0.131 4.131
14 C -0.094 4.094
15 H 0.085 0.915
16 C -0.114 4.114
17 C 0.150 3.850
18 N -0.734 5.734
19 C -0.236 4.236
20 H 0.071 0.929
21 C -0.017 4.017
22 N -0.935 5.935
23 Si 0.907 3.093
24 H -0.280 1.280
25 H -0.292 1.292
26 H -0.292 1.292
27 C 0.113 3.887
28 N -0.247 5.247
29 H 0.069 0.931
30 H 0.086 0.914
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.079 0.921
34 H 0.076 0.924
35 H 0.070 0.930
36 H 0.089 0.911
37 H 0.070 0.930
38 H 0.221 0.779
39 H 0.074 0.926
40 H 0.073 0.927
41 H 0.078 0.922
42 H 0.082 0.918
43 H 0.069 0.931
44 H 0.066 0.934
45 H 0.020 0.980
46 H 0.018 0.982
47 H 0.383 0.617
48 H 0.254 0.746
49 H 0.076 0.924
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.103 0.786 -34.561 38.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.084 3.916
3 C -0.207 4.207
4 C -0.218 4.218
5 N -0.089 5.089
6 C -0.110 4.110
7 N -0.205 5.205
8 C -0.134 4.134
9 C 0.409 3.591
10 O -0.393 6.393
11 N -0.334 5.334
12 C -0.009 4.009
13 C -0.169 4.169
14 C -0.114 4.114
15 H 0.104 0.896
16 C -0.152 4.152
17 C 0.022 3.978
18 N -0.378 5.378
19 C -0.367 4.367
20 H 0.089 0.911
21 C -0.212 4.212
22 N -0.584 5.584
23 Si 0.738 3.262
24 H -0.205 1.205
25 H -0.219 1.219
26 H -0.219 1.219
27 C -0.009 4.009
28 N -0.085 5.085
29 H 0.088 0.912
30 H 0.105 0.895
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.097 0.903
34 H 0.095 0.905
35 H 0.089 0.911
36 H 0.107 0.893
37 H 0.089 0.911
38 H 0.237 0.763
39 H 0.092 0.908
40 H 0.091 0.909
41 H 0.097 0.903
42 H 0.101 0.899
43 H 0.087 0.913
44 H 0.084 0.916
45 H 0.038 0.962
46 H 0.036 0.964
47 H 0.217 0.783
48 H 0.063 0.937
49 H 0.094 0.906
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -15.855 1.994 -34.005 37.572
hybrid contribution 0.131 0.034 0.450 0.470
sum -15.723 2.028 -33.554 37.111
Atomic orbital electron populations
1.22267 0.91662 1.03648 1.04217 1.21180 0.95350 0.94406 0.80623
1.22005 1.02646 0.92195 1.03858 1.22262 1.02745 1.01139 0.95653
1.47802 1.41420 1.06288 1.13427 1.26358 1.01794 0.86443 0.96379
1.71418 1.16398 1.25806 1.06830 1.23653 1.06241 0.85652 0.97860
1.15844 0.78461 0.83847 0.80911 1.90849 1.53312 1.21904 1.73261
1.48164 1.60754 1.06580 1.17909 1.22077 1.01609 0.79318 0.97867
1.22787 1.02602 0.97773 0.93741 1.22346 1.00729 0.93487 0.94824
0.89645 1.21682 0.98337 1.00233 0.94970 1.20703 0.93503 0.95104
0.88456 1.42375 1.47007 1.29159 1.19288 1.19309 1.17959 1.03590
0.95877 0.91119 1.24743 0.99513 0.98002 0.98980 1.69679 1.28842
1.25353 1.34514 0.86110 0.77363 0.79627 0.83103 1.20548 1.21928
1.21903 1.22478 0.98282 0.99486 0.80627 1.74306 1.13416 1.25383
0.95434 0.91190 0.89529 0.91321 0.91223 0.90261 0.90464 0.91105
0.89263 0.91105 0.76306 0.90778 0.90893 0.90318 0.89942 0.91252
0.91552 0.96189 0.96420 0.78337 0.93657 0.90573 0.89800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.49 8.72 37.16 0.32 -0.17 16
2 C 0.17 0.77 1.23 -131.82 -0.16 0.61 16
3 C -0.15 -0.79 8.04 37.16 0.30 -0.49 16
4 C -0.16 -0.33 8.28 37.16 0.31 -0.02 16
5 N -0.29 -2.45 3.17 -49.84 -0.16 -2.61 16
6 C 0.19 1.40 11.71 -90.48 -1.06 0.34 16
7 N -0.48 -5.32 8.87 -12.36 -0.11 -5.43 16
8 C 0.15 2.02 7.80 -156.35 -1.22 0.80 16
9 C 0.63 10.14 7.86 -12.31 -0.10 10.05 16
10 O -0.52 -10.17 17.34 5.32 0.09 -10.08 16
11 N -0.60 -8.54 3.33 -171.63 -0.57 -9.11 16
12 C 0.11 1.28 5.52 -3.07 -0.02 1.27 16
13 C -0.13 -1.38 6.42 -24.90 -0.16 -1.54 16
14 C -0.09 -1.23 3.07 -88.48 -0.27 -1.50 16
15 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
16 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16
17 C 0.15 3.10 6.11 -4.04 -0.02 3.07 16
18 N -0.73 -19.27 5.60 -59.90 -0.34 -19.61 16
19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16
20 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16
21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16
22 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16
23 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16
24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
27 C 0.11 1.64 5.57 -2.53 -0.01 1.63 16
28 N -0.25 -3.17 11.09 32.08 0.36 -2.81 16
29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16
31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16
32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16
33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16
35 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16
36 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16
37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16
38 H 0.22 0.58 7.53 -52.49 -0.40 0.19 16
39 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16
40 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16
41 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16
42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
44 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16
45 H 0.02 0.42 7.46 -51.93 -0.39 0.04 16
46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
47 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16
48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16
49 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16
50 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16
LS Contribution 405.20 15.07 6.11 6.11
Total: -1.00 -37.22 405.20 -9.94 -47.16
By element:
Atomic # 1 Polarization: 10.61 SS G_CDS: -8.56 Total: 2.06 kcal
Atomic # 6 Polarization: 6.95 SS G_CDS: -2.47 Total: 4.48 kcal
Atomic # 7 Polarization: -67.72 SS G_CDS: -0.09 Total: -67.82 kcal
Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal
Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -37.22 -9.94 -47.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724717550.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.959 kcal
(2) G-P(sol) polarization free energy of solvation -37.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds