Wall clock time and date at job start Tue Mar 31 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46572 * 2 1 4 4 C 1.53003 * 109.46972 * 240.00567 * 2 1 3 5 5 N 1.46493 * 109.46895 * 120.00125 * 2 1 3 6 6 C 1.34583 * 125.74848 * 75.00356 * 5 2 1 7 7 N 1.30874 * 107.62758 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26325 * 0.02562 * 7 6 5 9 9 C 1.47879 * 126.04497 * 179.97438 * 8 7 6 10 10 O 1.21550 * 119.99869 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99668 * 0.02562 * 9 8 7 12 12 C 1.47024 * 125.65261 * 359.69561 * 11 9 8 13 13 C 1.54311 * 107.27761 * 180.96878 * 12 11 9 14 14 C 1.55163 * 102.86572 * 22.52580 * 13 12 11 15 15 H 1.08998 * 111.03487 * 82.38780 * 14 13 12 16 16 C 1.52993 * 111.00452 * 206.23217 * 14 13 12 17 17 C 1.53007 * 109.47162 * 178.64888 * 16 14 13 18 18 N 1.46501 * 109.47241 * 179.97438 * 17 16 14 19 19 C 1.36933 * 119.99633 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00654 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99920 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99477 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47059 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47194 * 120.00500 * 23 21 19 26 26 H 1.48498 * 109.46894 * 240.00000 * 23 21 19 27 27 C 1.47434 * 125.64558 * 180.02562 * 11 9 8 28 28 N 1.28855 * 125.74897 * 254.99498 * 5 2 1 29 29 H 1.08992 * 109.47174 * 299.99800 * 1 2 3 30 30 H 1.08998 * 109.47205 * 60.00106 * 1 2 3 31 31 H 1.08998 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46515 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47750 * 299.99986 * 3 2 1 34 34 H 1.09003 * 109.47542 * 60.00611 * 3 2 1 35 35 H 1.09000 * 109.46702 * 299.99755 * 4 2 1 36 36 H 1.08998 * 109.47706 * 59.99633 * 4 2 1 37 37 H 1.09000 * 109.46842 * 180.02562 * 4 2 1 38 38 H 1.07997 * 126.18985 * 359.95974 * 6 5 2 39 39 H 1.09000 * 109.88061 * 300.51470 * 12 11 9 40 40 H 1.08998 * 109.88255 * 61.67837 * 12 11 9 41 41 H 1.09001 * 110.92615 * 264.11384 * 13 12 11 42 42 H 1.09002 * 110.74863 * 140.85419 * 13 12 11 43 43 H 1.08998 * 109.47518 * 298.64407 * 16 14 13 44 44 H 1.09004 * 109.47777 * 58.64960 * 16 14 13 45 45 H 1.09007 * 109.46772 * 300.00149 * 17 16 14 46 46 H 1.08994 * 109.46692 * 59.99422 * 17 16 14 47 47 H 0.96995 * 119.99855 * 359.97438 * 18 17 16 48 48 H 0.97009 * 119.99451 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.36678 * 274.67679 * 27 11 9 50 50 H 1.09002 * 110.36459 * 36.99800 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0139 -2.0221 1.3921 7 7 2.5283 -2.2504 2.5737 8 6 2.8496 -1.0575 3.1066 9 6 3.4603 -0.8339 4.4348 10 8 3.7054 0.2965 4.8084 11 7 3.7451 -1.8835 5.2308 12 6 3.4965 -3.2961 4.9080 13 6 3.9582 -4.1315 6.1205 14 6 3.9087 -3.1070 7.2848 15 1 2.8971 -3.0117 7.6793 16 6 4.8927 -3.4879 8.3926 17 6 4.8396 -2.4386 9.5050 18 7 5.7814 -2.8037 10.5661 19 6 5.9086 -2.0069 11.6724 20 1 5.3144 -1.1096 11.7631 21 6 6.8006 -2.3530 12.6782 22 7 7.5244 -3.4468 12.5680 23 14 6.9737 -1.2665 14.1878 24 1 6.0552 -0.1057 14.0701 25 1 6.6296 -2.0484 15.4024 26 1 8.3737 -0.7822 14.2911 27 6 4.3513 -1.8048 6.5724 28 7 2.5245 -0.1256 2.2377 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7215 -1.2491 38 1 1.6513 -2.7674 0.6998 39 1 2.4328 -3.4540 4.7301 40 1 4.0684 -3.5808 4.0248 41 1 4.9733 -4.5009 5.9749 42 1 3.2713 -4.9576 6.3044 43 1 4.6226 -4.4624 8.7993 44 1 5.9019 -3.5322 7.9829 45 1 5.1097 -1.4640 9.0983 46 1 3.8305 -2.3943 9.9146 47 1 6.3148 -3.6097 10.4849 48 1 8.1481 -3.6885 13.2706 49 1 5.4379 -1.7648 6.4960 50 1 3.9755 -0.9329 7.1079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724717550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:01 Heat of formation + Delta-G solvation = 65.798590 kcal Electronic energy + Delta-G solvation = -28555.088292 eV Core-core repulsion = 24619.613645 eV Total energy + Delta-G solvation = -3935.474647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.80926 -39.94643 -37.96433 -37.52440 -35.07520 -33.25125 -32.62938 -31.37046 -30.84106 -29.39916 -28.24083 -28.11927 -27.34209 -25.19212 -23.60451 -23.36864 -22.66232 -21.17709 -20.55737 -20.09336 -19.64050 -17.68955 -17.06470 -16.94834 -16.83393 -16.25754 -15.67187 -15.11270 -14.86788 -14.65815 -14.56045 -14.46732 -13.79829 -13.48459 -13.44189 -13.25412 -13.15086 -12.99759 -12.96850 -12.76911 -12.58581 -12.51254 -12.41044 -12.08428 -11.99908 -11.65106 -11.58824 -11.23642 -10.98147 -10.78678 -10.70416 -10.63650 -10.52048 -10.37126 -10.24957 -10.21392 -9.89207 -9.82162 -9.60597 -8.80147 -8.61997 -6.84190 -5.69902 -2.97892 1.18931 1.74005 1.85388 2.79298 3.27373 3.48822 3.54514 3.56965 3.68067 3.79752 3.94992 4.06102 4.24850 4.43501 4.63314 4.67237 4.70693 4.75268 4.83622 4.89275 4.94413 4.96287 5.03115 5.12034 5.23842 5.32879 5.41417 5.44380 5.59264 5.61175 5.64685 5.71235 5.76495 5.84117 5.92010 6.00033 6.01853 6.04997 6.16752 6.20692 6.29240 6.34388 6.45140 6.49758 6.93305 6.97262 7.39532 7.72002 7.78153 8.10604 8.49550 9.60534 10.19441 10.53982 11.53258 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.001817 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.857802 B =15404.153221 C =16069.773863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.293 5.293 6 C 0.186 3.814 7 N -0.479 5.479 8 C 0.145 3.855 9 C 0.626 3.374 10 O -0.520 6.520 11 N -0.600 5.600 12 C 0.114 3.886 13 C -0.131 4.131 14 C -0.094 4.094 15 H 0.085 0.915 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.113 3.887 28 N -0.247 5.247 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.076 0.924 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 0.786 -34.561 38.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.089 5.089 6 C -0.110 4.110 7 N -0.205 5.205 8 C -0.134 4.134 9 C 0.409 3.591 10 O -0.393 6.393 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.169 4.169 14 C -0.114 4.114 15 H 0.104 0.896 16 C -0.152 4.152 17 C 0.022 3.978 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.009 4.009 28 N -0.085 5.085 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.855 1.994 -34.005 37.572 hybrid contribution 0.131 0.034 0.450 0.470 sum -15.723 2.028 -33.554 37.111 Atomic orbital electron populations 1.22267 0.91662 1.03648 1.04217 1.21180 0.95350 0.94406 0.80623 1.22005 1.02646 0.92195 1.03858 1.22262 1.02745 1.01139 0.95653 1.47802 1.41420 1.06288 1.13427 1.26358 1.01794 0.86443 0.96379 1.71418 1.16398 1.25806 1.06830 1.23653 1.06241 0.85652 0.97860 1.15844 0.78461 0.83847 0.80911 1.90849 1.53312 1.21904 1.73261 1.48164 1.60754 1.06580 1.17909 1.22077 1.01609 0.79318 0.97867 1.22787 1.02602 0.97773 0.93741 1.22346 1.00729 0.93487 0.94824 0.89645 1.21682 0.98337 1.00233 0.94970 1.20703 0.93503 0.95104 0.88456 1.42375 1.47007 1.29159 1.19288 1.19309 1.17959 1.03590 0.95877 0.91119 1.24743 0.99513 0.98002 0.98980 1.69679 1.28842 1.25353 1.34514 0.86110 0.77363 0.79627 0.83103 1.20548 1.21928 1.21903 1.22478 0.98282 0.99486 0.80627 1.74306 1.13416 1.25383 0.95434 0.91190 0.89529 0.91321 0.91223 0.90261 0.90464 0.91105 0.89263 0.91105 0.76306 0.90778 0.90893 0.90318 0.89942 0.91252 0.91552 0.96189 0.96420 0.78337 0.93657 0.90573 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.72 37.16 0.32 -0.17 16 2 C 0.17 0.77 1.23 -131.82 -0.16 0.61 16 3 C -0.15 -0.79 8.04 37.16 0.30 -0.49 16 4 C -0.16 -0.33 8.28 37.16 0.31 -0.02 16 5 N -0.29 -2.45 3.17 -49.84 -0.16 -2.61 16 6 C 0.19 1.40 11.71 -90.48 -1.06 0.34 16 7 N -0.48 -5.32 8.87 -12.36 -0.11 -5.43 16 8 C 0.15 2.02 7.80 -156.35 -1.22 0.80 16 9 C 0.63 10.14 7.86 -12.31 -0.10 10.05 16 10 O -0.52 -10.17 17.34 5.32 0.09 -10.08 16 11 N -0.60 -8.54 3.33 -171.63 -0.57 -9.11 16 12 C 0.11 1.28 5.52 -3.07 -0.02 1.27 16 13 C -0.13 -1.38 6.42 -24.90 -0.16 -1.54 16 14 C -0.09 -1.23 3.07 -88.48 -0.27 -1.50 16 15 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 17 C 0.15 3.10 6.11 -4.04 -0.02 3.07 16 18 N -0.73 -19.27 5.60 -59.90 -0.34 -19.61 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 22 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 23 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 C 0.11 1.64 5.57 -2.53 -0.01 1.63 16 28 N -0.25 -3.17 11.09 32.08 0.36 -2.81 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 36 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.22 0.58 7.53 -52.49 -0.40 0.19 16 39 H 0.07 0.81 7.64 -51.93 -0.40 0.41 16 40 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 41 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.02 0.42 7.46 -51.93 -0.39 0.04 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 50 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16 LS Contribution 405.20 15.07 6.11 6.11 Total: -1.00 -37.22 405.20 -9.94 -47.16 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.56 Total: 2.06 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.47 Total: 4.48 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.09 Total: -67.82 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.22 -9.94 -47.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724717550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.959 kcal (2) G-P(sol) polarization free energy of solvation -37.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds