Wall clock time and date at job start Tue Mar 31 2020 18:33:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.52996 * 109.46572 * 2 1
4 4 C 1.53003 * 109.46972 * 240.00567 * 2 1 3
5 5 N 1.46493 * 109.46895 * 120.00125 * 2 1 3
6 6 C 1.34583 * 125.74848 * 75.00356 * 5 2 1
7 7 N 1.30874 * 107.62758 * 179.97438 * 6 5 2
8 8 C 1.34552 * 107.26325 * 0.02562 * 7 6 5
9 9 C 1.47879 * 126.04497 * 179.97438 * 8 7 6
10 10 O 1.21550 * 119.99869 * 180.02562 * 9 8 7
11 11 N 1.34775 * 119.99668 * 0.02562 * 9 8 7
12 12 C 1.47024 * 125.65261 * 359.69561 * 11 9 8
13 13 C 1.54311 * 107.27761 * 180.96878 * 12 11 9
14 14 C 1.55163 * 102.86572 * 22.52580 * 13 12 11
15 15 H 1.08998 * 111.03487 * 82.38780 * 14 13 12
16 16 C 1.52993 * 111.00452 * 206.23217 * 14 13 12
17 17 C 1.53007 * 109.47162 * 178.64888 * 16 14 13
18 18 N 1.46501 * 109.47241 * 179.97438 * 17 16 14
19 19 C 1.36933 * 119.99633 * 179.97438 * 18 17 16
20 20 H 1.08003 * 120.00654 * 0.02562 * 19 18 17
21 21 C 1.38814 * 119.99920 * 179.97438 * 19 18 17
22 22 N 1.31623 * 119.99477 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 120.00175 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47059 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.47194 * 120.00500 * 23 21 19
26 26 H 1.48498 * 109.46894 * 240.00000 * 23 21 19
27 27 C 1.47434 * 125.64558 * 180.02562 * 11 9 8
28 28 N 1.28855 * 125.74897 * 254.99498 * 5 2 1
29 29 H 1.08992 * 109.47174 * 299.99800 * 1 2 3
30 30 H 1.08998 * 109.47205 * 60.00106 * 1 2 3
31 31 H 1.08998 * 109.46743 * 179.97438 * 1 2 3
32 32 H 1.09009 * 109.46515 * 180.02562 * 3 2 1
33 33 H 1.09001 * 109.47750 * 299.99986 * 3 2 1
34 34 H 1.09003 * 109.47542 * 60.00611 * 3 2 1
35 35 H 1.09000 * 109.46702 * 299.99755 * 4 2 1
36 36 H 1.08998 * 109.47706 * 59.99633 * 4 2 1
37 37 H 1.09000 * 109.46842 * 180.02562 * 4 2 1
38 38 H 1.07997 * 126.18985 * 359.95974 * 6 5 2
39 39 H 1.09000 * 109.88061 * 300.51470 * 12 11 9
40 40 H 1.08998 * 109.88255 * 61.67837 * 12 11 9
41 41 H 1.09001 * 110.92615 * 264.11384 * 13 12 11
42 42 H 1.09002 * 110.74863 * 140.85419 * 13 12 11
43 43 H 1.08998 * 109.47518 * 298.64407 * 16 14 13
44 44 H 1.09004 * 109.47777 * 58.64960 * 16 14 13
45 45 H 1.09007 * 109.46772 * 300.00149 * 17 16 14
46 46 H 1.08994 * 109.46692 * 59.99422 * 17 16 14
47 47 H 0.96995 * 119.99855 * 359.97438 * 18 17 16
48 48 H 0.97009 * 119.99451 * 179.97438 * 22 21 19
49 49 H 1.09000 * 110.36678 * 274.67679 * 27 11 9
50 50 H 1.09002 * 110.36459 * 36.99800 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7211 -1.2493
5 7 2.0184 -0.6906 1.1961
6 6 2.0139 -2.0221 1.3921
7 7 2.5283 -2.2504 2.5737
8 6 2.8496 -1.0575 3.1066
9 6 3.4603 -0.8339 4.4348
10 8 3.7054 0.2965 4.8084
11 7 3.7451 -1.8835 5.2308
12 6 3.4965 -3.2961 4.9080
13 6 3.9582 -4.1315 6.1205
14 6 3.9087 -3.1070 7.2848
15 1 2.8971 -3.0117 7.6793
16 6 4.8927 -3.4879 8.3926
17 6 4.8396 -2.4386 9.5050
18 7 5.7814 -2.8037 10.5661
19 6 5.9086 -2.0069 11.6724
20 1 5.3144 -1.1096 11.7631
21 6 6.8006 -2.3530 12.6782
22 7 7.5244 -3.4468 12.5680
23 14 6.9737 -1.2665 14.1878
24 1 6.0552 -0.1057 14.0701
25 1 6.6296 -2.0484 15.4024
26 1 8.3737 -0.7822 14.2911
27 6 4.3513 -1.8048 6.5724
28 7 2.5245 -0.1256 2.2377
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 3.1300 1.4425 -0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6767 1.9564 0.8900
35 1 1.6767 -1.7488 -1.2493
36 1 1.6767 -0.2073 -2.1393
37 1 3.1301 -0.7215 -1.2491
38 1 1.6513 -2.7674 0.6998
39 1 2.4328 -3.4540 4.7301
40 1 4.0684 -3.5808 4.0248
41 1 4.9733 -4.5009 5.9749
42 1 3.2713 -4.9576 6.3044
43 1 4.6226 -4.4624 8.7993
44 1 5.9019 -3.5322 7.9829
45 1 5.1097 -1.4640 9.0983
46 1 3.8305 -2.3943 9.9146
47 1 6.3148 -3.6097 10.4849
48 1 8.1481 -3.6885 13.2706
49 1 5.4379 -1.7648 6.4960
50 1 3.9755 -0.9329 7.1079
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724717550.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:33:00
Heat of formation + Delta-G solvation = 41.973678 kcal
Electronic energy + Delta-G solvation = -28556.121418 eV
Core-core repulsion = 24619.613645 eV
Total energy + Delta-G solvation = -3936.507773 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-44.55611 -41.09229 -38.96488 -38.20668 -36.85471 -34.65289 -33.63967 -32.73330
-31.95263 -30.70569 -28.83222 -28.43215 -28.39704 -26.57190 -25.09213 -24.21388
-23.78111 -22.64503 -21.29387 -21.08321 -20.67639 -19.14998 -18.52422 -17.73584
-17.66353 -17.32131 -16.67429 -16.61476 -16.09289 -15.63197 -15.37512 -15.20032
-15.09246 -15.04836 -14.82831 -14.34003 -14.02845 -13.93276 -13.73848 -13.35311
-13.29500 -13.25361 -13.08854 -12.98876 -12.92624 -12.83519 -12.77535 -12.40092
-12.30277 -12.13347 -12.01588 -11.98684 -11.70937 -11.57101 -11.52603 -11.44542
-11.39757 -11.28103 -10.93445 -10.60706 -9.76198 -8.99842 -7.96189 -5.24741
0.27577 1.09826 1.11731 1.46353 1.47378 1.57785 1.82073 2.18681
2.55391 2.95329 3.22679 3.37228 3.50986 3.63917 3.65424 3.75988
3.78259 3.80926 3.87779 4.17904 4.33076 4.37666 4.49790 4.52519
4.57350 4.57816 4.60027 4.68022 4.69492 4.77191 4.77701 4.79827
4.87545 4.89708 4.96695 5.00936 5.09285 5.12184 5.16168 5.20571
5.21698 5.31776 5.36402 5.39611 5.48275 5.50253 5.69563 6.27220
6.28159 6.76827 7.08067 7.33118 8.09573 8.33521 9.27487
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.028774 B = 0.001817 C = 0.001742
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.857802 B =15404.153221 C =16069.773863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.157 3.843
3 C -0.150 4.150
4 C -0.155 4.155
5 N -0.286 5.286
6 C 0.201 3.799
7 N -0.492 5.492
8 C 0.118 3.882
9 C 0.617 3.383
10 O -0.572 6.572
11 N -0.598 5.598
12 C 0.118 3.882
13 C -0.119 4.119
14 C -0.083 4.083
15 H 0.091 0.909
16 C -0.098 4.098
17 C 0.147 3.853
18 N -0.747 5.747
19 C -0.248 4.248
20 H 0.072 0.928
21 C -0.076 4.076
22 N -0.968 5.968
23 Si 0.974 3.026
24 H -0.269 1.269
25 H -0.289 1.289
26 H -0.292 1.292
27 C 0.110 3.890
28 N -0.276 5.276
29 H 0.044 0.956
30 H 0.112 0.888
31 H 0.084 0.916
32 H 0.049 0.951
33 H 0.109 0.891
34 H 0.049 0.951
35 H 0.093 0.907
36 H 0.113 0.887
37 H 0.056 0.944
38 H 0.273 0.727
39 H 0.082 0.918
40 H 0.080 0.920
41 H 0.085 0.915
42 H 0.109 0.891
43 H 0.077 0.923
44 H 0.064 0.936
45 H 0.013 0.987
46 H 0.019 0.981
47 H 0.375 0.625
48 H 0.252 0.748
49 H 0.068 0.932
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.938 -0.778 -37.232 41.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.077 3.923
3 C -0.207 4.207
4 C -0.213 4.213
5 N -0.083 5.083
6 C -0.093 4.093
7 N -0.218 5.218
8 C -0.160 4.160
9 C 0.402 3.598
10 O -0.449 6.449
11 N -0.330 5.330
12 C -0.004 4.004
13 C -0.156 4.156
14 C -0.103 4.103
15 H 0.109 0.891
16 C -0.136 4.136
17 C 0.020 3.980
18 N -0.390 5.390
19 C -0.380 4.380
20 H 0.089 0.911
21 C -0.268 4.268
22 N -0.618 5.618
23 Si 0.803 3.197
24 H -0.194 1.194
25 H -0.216 1.216
26 H -0.219 1.219
27 C -0.012 4.012
28 N -0.117 5.117
29 H 0.063 0.937
30 H 0.131 0.869
31 H 0.103 0.897
32 H 0.068 0.932
33 H 0.128 0.872
34 H 0.068 0.932
35 H 0.112 0.888
36 H 0.131 0.869
37 H 0.075 0.925
38 H 0.288 0.712
39 H 0.101 0.899
40 H 0.099 0.901
41 H 0.104 0.896
42 H 0.127 0.873
43 H 0.096 0.904
44 H 0.083 0.917
45 H 0.031 0.969
46 H 0.037 0.963
47 H 0.207 0.793
48 H 0.061 0.939
49 H 0.087 0.913
50 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -17.728 0.411 -36.717 40.775
hybrid contribution 0.632 0.567 1.128 1.411
sum -17.096 0.978 -35.590 39.495
Atomic orbital electron populations
1.22284 0.90035 1.04732 1.04280 1.21661 0.96507 0.93888 0.80279
1.22019 1.01394 0.93318 1.03989 1.22302 1.01888 1.02416 0.94671
1.48201 1.40068 1.06950 1.13066 1.27306 0.99480 0.86803 0.95734
1.71338 1.17386 1.24753 1.08367 1.23208 1.08254 0.87109 0.97440
1.16290 0.78060 0.83478 0.81945 1.90795 1.55664 1.23828 1.74662
1.48257 1.59804 1.07640 1.17322 1.22215 1.02305 0.77390 0.98451
1.22791 1.03869 0.97424 0.91547 1.22207 0.99917 0.93467 0.94679
0.89098 1.21515 0.99196 0.98885 0.94048 1.20880 0.92085 0.96415
0.88586 1.42585 1.47854 1.28594 1.19931 1.19679 1.17650 1.03817
0.96851 0.91052 1.25576 0.99609 0.99572 1.02048 1.69821 1.29608
1.26988 1.35427 0.85066 0.77212 0.78140 0.79308 1.19393 1.21618
1.21889 1.22420 0.97843 0.99669 0.81275 1.74232 1.14224 1.26505
0.96706 0.93692 0.86897 0.89708 0.93154 0.87204 0.93227 0.88848
0.86857 0.92491 0.71164 0.89923 0.90140 0.89596 0.87253 0.90421
0.91681 0.96862 0.96342 0.79253 0.93918 0.91342 0.92026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.54 8.72 71.99 0.63 0.09 16
2 C 0.16 1.13 1.23 3.61 0.00 1.14 16
3 C -0.15 -1.54 8.04 71.98 0.58 -0.96 16
4 C -0.15 -0.08 8.28 71.98 0.60 0.52 16
5 N -0.29 -4.44 3.17 -311.59 -0.99 -5.43 16
6 C 0.20 2.48 11.71 180.30 2.11 4.59 16
7 N -0.49 -10.24 8.87 -193.03 -1.71 -11.95 16
8 C 0.12 3.37 7.80 137.13 1.07 4.44 16
9 C 0.62 21.11 7.86 86.80 0.68 21.80 16
10 O -0.57 -24.24 17.34 -3.87 -0.07 -24.30 16
11 N -0.60 -17.36 3.33 -815.18 -2.71 -20.08 16
12 C 0.12 2.47 5.52 86.72 0.48 2.95 16
13 C -0.12 -2.21 6.42 31.78 0.20 -2.01 16
14 C -0.08 -2.09 3.07 -9.41 -0.03 -2.12 16
15 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16
16 C -0.10 -3.06 4.84 30.59 0.15 -2.91 16
17 C 0.15 6.13 6.11 86.38 0.53 6.66 16
18 N -0.75 -39.75 5.60 -343.44 -1.92 -41.67 16
19 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16
20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16
21 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
22 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16
23 Si 0.97 47.89 29.55 68.60 2.03 49.92 16
24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16
25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
26 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16
27 C 0.11 3.32 5.57 86.85 0.48 3.80 16
28 N -0.28 -7.31 11.09 -52.43 -0.58 -7.89 16
29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16
30 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16
31 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16
32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16
33 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16
34 H 0.05 0.78 8.02 -2.39 -0.02 0.76 16
35 H 0.09 -0.34 7.34 -2.39 -0.02 -0.36 16
36 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16
37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16
38 H 0.27 0.02 7.53 -2.91 -0.02 0.00 16
39 H 0.08 1.64 7.64 -2.39 -0.02 1.62 16
40 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16
41 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16
42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16
43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
44 H 0.06 2.06 8.10 -2.38 -0.02 2.04 16
45 H 0.01 0.58 7.46 -2.38 -0.02 0.56 16
46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
47 H 0.38 20.81 7.67 -92.71 -0.71 20.10 16
48 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16
49 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16
50 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16
Total: -1.00 -85.34 405.20 3.33 -82.01
By element:
Atomic # 1 Polarization: 19.39 SS G_CDS: 0.21 Total: 19.61 kcal
Atomic # 6 Polarization: 11.39 SS G_CDS: 8.79 Total: 20.18 kcal
Atomic # 7 Polarization: -139.77 SS G_CDS: -7.63 Total: -147.40 kcal
Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.30 kcal
Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal
Total: -85.34 3.33 -82.01 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724717550.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.979 kcal
(2) G-P(sol) polarization free energy of solvation -85.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.642 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds