Wall clock time and date at job start Tue Mar 31 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46572 * 2 1 4 4 C 1.53003 * 109.46972 * 240.00567 * 2 1 3 5 5 N 1.46493 * 109.46895 * 120.00125 * 2 1 3 6 6 C 1.34583 * 125.74848 * 75.00356 * 5 2 1 7 7 N 1.30874 * 107.62758 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26325 * 0.02562 * 7 6 5 9 9 C 1.47879 * 126.04497 * 179.97438 * 8 7 6 10 10 O 1.21550 * 119.99869 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99668 * 0.02562 * 9 8 7 12 12 C 1.47024 * 125.65261 * 359.69561 * 11 9 8 13 13 C 1.54311 * 107.27761 * 180.96878 * 12 11 9 14 14 C 1.55163 * 102.86572 * 22.52580 * 13 12 11 15 15 H 1.08998 * 111.03487 * 82.38780 * 14 13 12 16 16 C 1.52993 * 111.00452 * 206.23217 * 14 13 12 17 17 C 1.53007 * 109.47162 * 178.64888 * 16 14 13 18 18 N 1.46501 * 109.47241 * 179.97438 * 17 16 14 19 19 C 1.36933 * 119.99633 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00654 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99920 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99477 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47059 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47194 * 120.00500 * 23 21 19 26 26 H 1.48498 * 109.46894 * 240.00000 * 23 21 19 27 27 C 1.47434 * 125.64558 * 180.02562 * 11 9 8 28 28 N 1.28855 * 125.74897 * 254.99498 * 5 2 1 29 29 H 1.08992 * 109.47174 * 299.99800 * 1 2 3 30 30 H 1.08998 * 109.47205 * 60.00106 * 1 2 3 31 31 H 1.08998 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46515 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47750 * 299.99986 * 3 2 1 34 34 H 1.09003 * 109.47542 * 60.00611 * 3 2 1 35 35 H 1.09000 * 109.46702 * 299.99755 * 4 2 1 36 36 H 1.08998 * 109.47706 * 59.99633 * 4 2 1 37 37 H 1.09000 * 109.46842 * 180.02562 * 4 2 1 38 38 H 1.07997 * 126.18985 * 359.95974 * 6 5 2 39 39 H 1.09000 * 109.88061 * 300.51470 * 12 11 9 40 40 H 1.08998 * 109.88255 * 61.67837 * 12 11 9 41 41 H 1.09001 * 110.92615 * 264.11384 * 13 12 11 42 42 H 1.09002 * 110.74863 * 140.85419 * 13 12 11 43 43 H 1.08998 * 109.47518 * 298.64407 * 16 14 13 44 44 H 1.09004 * 109.47777 * 58.64960 * 16 14 13 45 45 H 1.09007 * 109.46772 * 300.00149 * 17 16 14 46 46 H 1.08994 * 109.46692 * 59.99422 * 17 16 14 47 47 H 0.96995 * 119.99855 * 359.97438 * 18 17 16 48 48 H 0.97009 * 119.99451 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.36678 * 274.67679 * 27 11 9 50 50 H 1.09002 * 110.36459 * 36.99800 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0139 -2.0221 1.3921 7 7 2.5283 -2.2504 2.5737 8 6 2.8496 -1.0575 3.1066 9 6 3.4603 -0.8339 4.4348 10 8 3.7054 0.2965 4.8084 11 7 3.7451 -1.8835 5.2308 12 6 3.4965 -3.2961 4.9080 13 6 3.9582 -4.1315 6.1205 14 6 3.9087 -3.1070 7.2848 15 1 2.8971 -3.0117 7.6793 16 6 4.8927 -3.4879 8.3926 17 6 4.8396 -2.4386 9.5050 18 7 5.7814 -2.8037 10.5661 19 6 5.9086 -2.0069 11.6724 20 1 5.3144 -1.1096 11.7631 21 6 6.8006 -2.3530 12.6782 22 7 7.5244 -3.4468 12.5680 23 14 6.9737 -1.2665 14.1878 24 1 6.0552 -0.1057 14.0701 25 1 6.6296 -2.0484 15.4024 26 1 8.3737 -0.7822 14.2911 27 6 4.3513 -1.8048 6.5724 28 7 2.5245 -0.1256 2.2377 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7215 -1.2491 38 1 1.6513 -2.7674 0.6998 39 1 2.4328 -3.4540 4.7301 40 1 4.0684 -3.5808 4.0248 41 1 4.9733 -4.5009 5.9749 42 1 3.2713 -4.9576 6.3044 43 1 4.6226 -4.4624 8.7993 44 1 5.9019 -3.5322 7.9829 45 1 5.1097 -1.4640 9.0983 46 1 3.8305 -2.3943 9.9146 47 1 6.3148 -3.6097 10.4849 48 1 8.1481 -3.6885 13.2706 49 1 5.4379 -1.7648 6.4960 50 1 3.9755 -0.9329 7.1079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724717550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:00 Heat of formation + Delta-G solvation = 41.973678 kcal Electronic energy + Delta-G solvation = -28556.121418 eV Core-core repulsion = 24619.613645 eV Total energy + Delta-G solvation = -3936.507773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.55611 -41.09229 -38.96488 -38.20668 -36.85471 -34.65289 -33.63967 -32.73330 -31.95263 -30.70569 -28.83222 -28.43215 -28.39704 -26.57190 -25.09213 -24.21388 -23.78111 -22.64503 -21.29387 -21.08321 -20.67639 -19.14998 -18.52422 -17.73584 -17.66353 -17.32131 -16.67429 -16.61476 -16.09289 -15.63197 -15.37512 -15.20032 -15.09246 -15.04836 -14.82831 -14.34003 -14.02845 -13.93276 -13.73848 -13.35311 -13.29500 -13.25361 -13.08854 -12.98876 -12.92624 -12.83519 -12.77535 -12.40092 -12.30277 -12.13347 -12.01588 -11.98684 -11.70937 -11.57101 -11.52603 -11.44542 -11.39757 -11.28103 -10.93445 -10.60706 -9.76198 -8.99842 -7.96189 -5.24741 0.27577 1.09826 1.11731 1.46353 1.47378 1.57785 1.82073 2.18681 2.55391 2.95329 3.22679 3.37228 3.50986 3.63917 3.65424 3.75988 3.78259 3.80926 3.87779 4.17904 4.33076 4.37666 4.49790 4.52519 4.57350 4.57816 4.60027 4.68022 4.69492 4.77191 4.77701 4.79827 4.87545 4.89708 4.96695 5.00936 5.09285 5.12184 5.16168 5.20571 5.21698 5.31776 5.36402 5.39611 5.48275 5.50253 5.69563 6.27220 6.28159 6.76827 7.08067 7.33118 8.09573 8.33521 9.27487 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.001817 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.857802 B =15404.153221 C =16069.773863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.201 3.799 7 N -0.492 5.492 8 C 0.118 3.882 9 C 0.617 3.383 10 O -0.572 6.572 11 N -0.598 5.598 12 C 0.118 3.882 13 C -0.119 4.119 14 C -0.083 4.083 15 H 0.091 0.909 16 C -0.098 4.098 17 C 0.147 3.853 18 N -0.747 5.747 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.269 1.269 25 H -0.289 1.289 26 H -0.292 1.292 27 C 0.110 3.890 28 N -0.276 5.276 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.273 0.727 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.068 0.932 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.938 -0.778 -37.232 41.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.218 5.218 8 C -0.160 4.160 9 C 0.402 3.598 10 O -0.449 6.449 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.156 4.156 14 C -0.103 4.103 15 H 0.109 0.891 16 C -0.136 4.136 17 C 0.020 3.980 18 N -0.390 5.390 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.194 1.194 25 H -0.216 1.216 26 H -0.219 1.219 27 C -0.012 4.012 28 N -0.117 5.117 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.288 0.712 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.207 0.793 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.728 0.411 -36.717 40.775 hybrid contribution 0.632 0.567 1.128 1.411 sum -17.096 0.978 -35.590 39.495 Atomic orbital electron populations 1.22284 0.90035 1.04732 1.04280 1.21661 0.96507 0.93888 0.80279 1.22019 1.01394 0.93318 1.03989 1.22302 1.01888 1.02416 0.94671 1.48201 1.40068 1.06950 1.13066 1.27306 0.99480 0.86803 0.95734 1.71338 1.17386 1.24753 1.08367 1.23208 1.08254 0.87109 0.97440 1.16290 0.78060 0.83478 0.81945 1.90795 1.55664 1.23828 1.74662 1.48257 1.59804 1.07640 1.17322 1.22215 1.02305 0.77390 0.98451 1.22791 1.03869 0.97424 0.91547 1.22207 0.99917 0.93467 0.94679 0.89098 1.21515 0.99196 0.98885 0.94048 1.20880 0.92085 0.96415 0.88586 1.42585 1.47854 1.28594 1.19931 1.19679 1.17650 1.03817 0.96851 0.91052 1.25576 0.99609 0.99572 1.02048 1.69821 1.29608 1.26988 1.35427 0.85066 0.77212 0.78140 0.79308 1.19393 1.21618 1.21889 1.22420 0.97843 0.99669 0.81275 1.74232 1.14224 1.26505 0.96706 0.93692 0.86897 0.89708 0.93154 0.87204 0.93227 0.88848 0.86857 0.92491 0.71164 0.89923 0.90140 0.89596 0.87253 0.90421 0.91681 0.96862 0.96342 0.79253 0.93918 0.91342 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 8.72 71.99 0.63 0.09 16 2 C 0.16 1.13 1.23 3.61 0.00 1.14 16 3 C -0.15 -1.54 8.04 71.98 0.58 -0.96 16 4 C -0.15 -0.08 8.28 71.98 0.60 0.52 16 5 N -0.29 -4.44 3.17 -311.59 -0.99 -5.43 16 6 C 0.20 2.48 11.71 180.30 2.11 4.59 16 7 N -0.49 -10.24 8.87 -193.03 -1.71 -11.95 16 8 C 0.12 3.37 7.80 137.13 1.07 4.44 16 9 C 0.62 21.11 7.86 86.80 0.68 21.80 16 10 O -0.57 -24.24 17.34 -3.87 -0.07 -24.30 16 11 N -0.60 -17.36 3.33 -815.18 -2.71 -20.08 16 12 C 0.12 2.47 5.52 86.72 0.48 2.95 16 13 C -0.12 -2.21 6.42 31.78 0.20 -2.01 16 14 C -0.08 -2.09 3.07 -9.41 -0.03 -2.12 16 15 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.10 -3.06 4.84 30.59 0.15 -2.91 16 17 C 0.15 6.13 6.11 86.38 0.53 6.66 16 18 N -0.75 -39.75 5.60 -343.44 -1.92 -41.67 16 19 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 23 Si 0.97 47.89 29.55 68.60 2.03 49.92 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 27 C 0.11 3.32 5.57 86.85 0.48 3.80 16 28 N -0.28 -7.31 11.09 -52.43 -0.58 -7.89 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.78 8.02 -2.39 -0.02 0.76 16 35 H 0.09 -0.34 7.34 -2.39 -0.02 -0.36 16 36 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.27 0.02 7.53 -2.91 -0.02 0.00 16 39 H 0.08 1.64 7.64 -2.39 -0.02 1.62 16 40 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16 41 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.06 8.10 -2.38 -0.02 2.04 16 45 H 0.01 0.58 7.46 -2.38 -0.02 0.56 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.38 20.81 7.67 -92.71 -0.71 20.10 16 48 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 49 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 50 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 Total: -1.00 -85.34 405.20 3.33 -82.01 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.21 Total: 19.61 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 8.79 Total: 20.18 kcal Atomic # 7 Polarization: -139.77 SS G_CDS: -7.63 Total: -147.40 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.07 Total: -24.30 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -85.34 3.33 -82.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724717550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.979 kcal (2) G-P(sol) polarization free energy of solvation -85.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds