Wall clock time and date at job start Tue Mar 31 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47519 * 2 1 4 4 C 1.53001 * 109.46900 * 239.99567 * 2 1 3 5 5 N 1.46500 * 109.46835 * 120.00124 * 2 1 3 6 6 C 1.34585 * 125.75193 * 74.99427 * 5 2 1 7 7 N 1.30873 * 107.62636 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26864 * 0.02562 * 7 6 5 9 9 C 1.47869 * 126.04720 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00095 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99805 * 0.02562 * 9 8 7 12 12 C 1.47010 * 125.65008 * 0.02562 * 11 9 8 13 13 C 1.54329 * 107.27105 * 178.89831 * 12 11 9 14 14 C 1.55154 * 102.94397 * 337.80880 * 13 12 11 15 15 H 1.08996 * 111.00484 * 277.39183 * 14 13 12 16 16 C 1.52992 * 111.00598 * 153.57216 * 14 13 12 17 17 C 1.53004 * 109.47319 * 178.17997 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47468 * 125.62408 * 179.97438 * 11 9 8 28 28 N 1.28852 * 125.74375 * 255.31149 * 5 2 1 29 29 H 1.09000 * 109.47111 * 300.00667 * 1 2 3 30 30 H 1.09005 * 109.47011 * 60.00073 * 1 2 3 31 31 H 1.09001 * 109.47644 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47040 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46920 * 299.99983 * 3 2 1 34 34 H 1.09000 * 109.47474 * 59.99555 * 3 2 1 35 35 H 1.09001 * 109.47178 * 300.00537 * 4 2 1 36 36 H 1.09005 * 109.46994 * 60.00350 * 4 2 1 37 37 H 1.08998 * 109.47063 * 180.02562 * 4 2 1 38 38 H 1.07999 * 126.18397 * 0.02921 * 6 5 2 39 39 H 1.09001 * 109.88498 * 59.48572 * 12 11 9 40 40 H 1.08998 * 109.88824 * 298.31675 * 12 11 9 41 41 H 1.08998 * 110.71858 * 219.43858 * 13 12 11 42 42 H 1.09001 * 110.71490 * 96.17173 * 13 12 11 43 43 H 1.09000 * 109.47364 * 58.18017 * 16 14 13 44 44 H 1.08998 * 109.47610 * 298.18079 * 16 14 13 45 45 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 46 46 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 47 47 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 48 48 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.34840 * 85.33092 * 27 11 9 50 50 H 1.08995 * 110.40928 * 322.99296 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0137 -2.0221 1.3923 7 7 2.5281 -2.2504 2.5739 8 6 2.8497 -1.0574 3.1068 9 6 3.4604 -0.8338 4.4347 10 8 3.7057 0.2966 4.8084 11 7 3.7451 -1.8834 5.2309 12 6 3.5026 -3.2964 4.9053 13 6 4.0103 -4.1348 6.0974 14 6 5.0256 -3.1836 6.7840 15 1 5.9961 -3.2253 6.2896 16 6 5.1581 -3.5059 8.2738 17 6 6.1989 -2.5792 8.9055 18 7 6.3262 -2.8882 10.3318 19 6 7.2045 -2.1821 11.1096 20 1 7.8031 -1.3970 10.6717 21 6 7.3256 -2.4752 12.4610 22 7 6.5957 -3.4316 12.9949 23 14 8.5181 -1.5066 13.5237 24 1 8.4541 -2.0060 14.9207 25 1 9.8974 -1.6760 13.0001 26 1 8.1508 -0.0680 13.4949 27 6 4.3526 -1.8041 6.5723 28 7 2.5191 -0.1252 2.2401 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6765 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7218 -1.2490 38 1 1.6519 -2.7674 0.6996 39 1 4.0489 -3.5678 4.0020 40 1 2.4356 -3.4657 4.7607 41 1 4.5056 -5.0409 5.7484 42 1 3.1912 -4.3782 6.7742 43 1 5.4734 -4.5422 8.3947 44 1 4.1958 -3.3593 8.7643 45 1 5.8836 -1.5429 8.7845 46 1 7.1612 -2.7258 8.4149 47 1 5.7878 -3.5925 10.7254 48 1 6.6800 -3.6362 13.9394 49 1 3.5842 -1.6368 7.3270 50 1 5.0978 -1.0094 6.6057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724717551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:05 Heat of formation + Delta-G solvation = 65.908993 kcal Electronic energy + Delta-G solvation = -28541.689038 eV Core-core repulsion = 24606.219177 eV Total energy + Delta-G solvation = -3935.469860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.80952 -39.94338 -37.96220 -37.52251 -35.07247 -33.25060 -32.62836 -31.37094 -30.83769 -29.39845 -28.24142 -28.12056 -27.35048 -25.18927 -23.59719 -23.36617 -22.65407 -21.16302 -20.55733 -20.10254 -19.65918 -17.68858 -17.06598 -16.94393 -16.83848 -16.22801 -15.71700 -15.00201 -14.91627 -14.70098 -14.60028 -14.40948 -13.79943 -13.48199 -13.45339 -13.26453 -13.15036 -13.01154 -12.95449 -12.76738 -12.58694 -12.50571 -12.41430 -12.07231 -12.00231 -11.65134 -11.58627 -11.23375 -10.97192 -10.76239 -10.69679 -10.64743 -10.51608 -10.37997 -10.27432 -10.21111 -9.92804 -9.82218 -9.59576 -8.78856 -8.62247 -6.84010 -5.69239 -2.97350 1.18758 1.73890 1.85258 2.79131 3.27194 3.50289 3.53973 3.55521 3.67990 3.79642 3.94920 4.05998 4.24806 4.43382 4.63573 4.67362 4.70631 4.75137 4.83565 4.89126 4.94582 4.96224 5.03023 5.11904 5.23749 5.32856 5.41318 5.44141 5.59289 5.61435 5.64933 5.71225 5.76419 5.84239 5.91998 6.00016 6.01602 6.04933 6.16652 6.20469 6.29313 6.34956 6.45392 6.50002 6.93619 6.97498 7.39336 7.71856 7.77402 8.10392 8.50189 9.60957 10.19906 10.54489 11.53762 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.001807 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.965967 B =15488.388310 C =16131.324502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.160 4.160 5 N -0.293 5.293 6 C 0.186 3.814 7 N -0.479 5.479 8 C 0.145 3.855 9 C 0.625 3.375 10 O -0.520 6.520 11 N -0.600 5.600 12 C 0.114 3.886 13 C -0.131 4.131 14 C -0.094 4.094 15 H 0.085 0.915 16 C -0.114 4.114 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C 0.113 3.887 28 N -0.247 5.247 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.076 0.924 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 0.914 -34.925 38.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.089 5.089 6 C -0.110 4.110 7 N -0.204 5.204 8 C -0.134 4.134 9 C 0.409 3.591 10 O -0.393 6.393 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.169 4.169 14 C -0.114 4.114 15 H 0.104 0.896 16 C -0.152 4.152 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.213 1.213 27 C -0.009 4.009 28 N -0.085 5.085 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.857 2.098 -34.418 37.546 hybrid contribution 0.263 0.028 0.381 0.463 sum -14.594 2.126 -34.037 37.095 Atomic orbital electron populations 1.22269 0.91673 1.03648 1.04217 1.21180 0.95346 0.94406 0.80620 1.22005 1.02645 0.92196 1.03861 1.22262 1.02750 1.01137 0.95647 1.47806 1.41551 1.06278 1.13301 1.26360 1.01811 0.86454 0.96351 1.71415 1.16361 1.25817 1.06854 1.23654 1.06204 0.85637 0.97916 1.15846 0.78543 0.83869 0.80808 1.90849 1.53191 1.21900 1.73402 1.48170 1.60843 1.06572 1.17821 1.22085 1.01426 0.79297 0.98080 1.22790 0.99343 0.98139 0.96627 1.22352 0.98577 0.93242 0.97205 0.89621 1.21681 1.00664 1.00798 0.92081 1.20696 0.95114 0.95758 0.86166 1.42357 1.48987 1.43191 1.03272 1.19214 1.14628 1.12513 0.90539 0.91243 1.24739 1.00308 0.99193 0.96925 1.69657 1.43368 1.33154 1.12233 0.86256 0.80791 0.79432 0.79660 1.21720 1.21319 1.21275 1.22496 0.97498 0.98889 0.81985 1.74309 1.13480 1.25365 0.95389 0.91199 0.89525 0.91319 0.91220 0.90255 0.90468 0.91103 0.89260 0.91100 0.76304 0.90771 0.90905 0.89921 0.90339 0.91247 0.91553 0.96231 0.96429 0.78333 0.93556 0.90597 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.72 37.16 0.32 -0.17 16 2 C 0.17 0.77 1.23 -131.82 -0.16 0.61 16 3 C -0.15 -0.79 8.05 37.16 0.30 -0.49 16 4 C -0.16 -0.33 8.28 37.16 0.31 -0.02 16 5 N -0.29 -2.45 3.16 -49.84 -0.16 -2.60 16 6 C 0.19 1.39 11.71 -90.48 -1.06 0.33 16 7 N -0.48 -5.31 8.87 -12.36 -0.11 -5.42 16 8 C 0.15 2.02 7.80 -156.35 -1.22 0.80 16 9 C 0.63 10.13 7.86 -12.32 -0.10 10.03 16 10 O -0.52 -10.16 17.34 5.32 0.09 -10.07 16 11 N -0.60 -8.53 3.33 -171.57 -0.57 -9.10 16 12 C 0.11 1.28 5.52 -3.07 -0.02 1.26 16 13 C -0.13 -1.39 6.42 -24.90 -0.16 -1.55 16 14 C -0.09 -1.23 3.04 -88.46 -0.27 -1.50 16 15 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 17 C 0.15 3.10 6.14 -4.04 -0.02 3.08 16 18 N -0.73 -19.27 5.60 -59.91 -0.34 -19.61 16 19 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 22 N -0.94 -28.97 13.06 55.49 0.72 -28.25 16 23 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.11 1.64 5.71 -2.49 -0.01 1.63 16 28 N -0.25 -3.17 11.09 32.08 0.36 -2.81 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 36 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.22 0.58 7.53 -52.49 -0.39 0.19 16 39 H 0.07 0.81 7.63 -51.93 -0.40 0.42 16 40 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 45 H 0.02 0.42 7.59 -51.93 -0.39 0.02 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 50 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -37.15 405.39 -9.94 -47.10 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.56 Total: 2.13 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.47 Total: 4.44 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -0.09 Total: -67.79 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.15 -9.94 -47.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724717551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.005 kcal (2) G-P(sol) polarization free energy of solvation -37.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds