Wall clock time and date at job start Tue Mar 31 2020 18:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47519 * 2 1 4 4 C 1.53001 * 109.46900 * 239.99567 * 2 1 3 5 5 N 1.46500 * 109.46835 * 120.00124 * 2 1 3 6 6 C 1.34585 * 125.75193 * 74.99427 * 5 2 1 7 7 N 1.30873 * 107.62636 * 179.97438 * 6 5 2 8 8 C 1.34552 * 107.26864 * 0.02562 * 7 6 5 9 9 C 1.47869 * 126.04720 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00095 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99805 * 0.02562 * 9 8 7 12 12 C 1.47010 * 125.65008 * 0.02562 * 11 9 8 13 13 C 1.54329 * 107.27105 * 178.89831 * 12 11 9 14 14 C 1.55154 * 102.94397 * 337.80880 * 13 12 11 15 15 H 1.08996 * 111.00484 * 277.39183 * 14 13 12 16 16 C 1.52992 * 111.00598 * 153.57216 * 14 13 12 17 17 C 1.53004 * 109.47319 * 178.17997 * 16 14 13 18 18 N 1.46499 * 109.47198 * 180.02562 * 17 16 14 19 19 C 1.36931 * 120.00122 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47468 * 125.62408 * 179.97438 * 11 9 8 28 28 N 1.28852 * 125.74375 * 255.31149 * 5 2 1 29 29 H 1.09000 * 109.47111 * 300.00667 * 1 2 3 30 30 H 1.09005 * 109.47011 * 60.00073 * 1 2 3 31 31 H 1.09001 * 109.47644 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47040 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46920 * 299.99983 * 3 2 1 34 34 H 1.09000 * 109.47474 * 59.99555 * 3 2 1 35 35 H 1.09001 * 109.47178 * 300.00537 * 4 2 1 36 36 H 1.09005 * 109.46994 * 60.00350 * 4 2 1 37 37 H 1.08998 * 109.47063 * 180.02562 * 4 2 1 38 38 H 1.07999 * 126.18397 * 0.02921 * 6 5 2 39 39 H 1.09001 * 109.88498 * 59.48572 * 12 11 9 40 40 H 1.08998 * 109.88824 * 298.31675 * 12 11 9 41 41 H 1.08998 * 110.71858 * 219.43858 * 13 12 11 42 42 H 1.09001 * 110.71490 * 96.17173 * 13 12 11 43 43 H 1.09000 * 109.47364 * 58.18017 * 16 14 13 44 44 H 1.08998 * 109.47610 * 298.18079 * 16 14 13 45 45 H 1.08995 * 109.46638 * 60.00097 * 17 16 14 46 46 H 1.08998 * 109.46846 * 300.00550 * 17 16 14 47 47 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 48 48 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.34840 * 85.33092 * 27 11 9 50 50 H 1.08995 * 110.40928 * 322.99296 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0137 -2.0221 1.3923 7 7 2.5281 -2.2504 2.5739 8 6 2.8497 -1.0574 3.1068 9 6 3.4604 -0.8338 4.4347 10 8 3.7057 0.2966 4.8084 11 7 3.7451 -1.8834 5.2309 12 6 3.5026 -3.2964 4.9053 13 6 4.0103 -4.1348 6.0974 14 6 5.0256 -3.1836 6.7840 15 1 5.9961 -3.2253 6.2896 16 6 5.1581 -3.5059 8.2738 17 6 6.1989 -2.5792 8.9055 18 7 6.3262 -2.8882 10.3318 19 6 7.2045 -2.1821 11.1096 20 1 7.8031 -1.3970 10.6717 21 6 7.3256 -2.4752 12.4610 22 7 6.5957 -3.4316 12.9949 23 14 8.5181 -1.5066 13.5237 24 1 8.4541 -2.0060 14.9207 25 1 9.8974 -1.6760 13.0001 26 1 8.1508 -0.0680 13.4949 27 6 4.3526 -1.8041 6.5723 28 7 2.5191 -0.1252 2.2401 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6765 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7218 -1.2490 38 1 1.6519 -2.7674 0.6996 39 1 4.0489 -3.5678 4.0020 40 1 2.4356 -3.4657 4.7607 41 1 4.5056 -5.0409 5.7484 42 1 3.1912 -4.3782 6.7742 43 1 5.4734 -4.5422 8.3947 44 1 4.1958 -3.3593 8.7643 45 1 5.8836 -1.5429 8.7845 46 1 7.1612 -2.7258 8.4149 47 1 5.7878 -3.5925 10.7254 48 1 6.6800 -3.6362 13.9394 49 1 3.5842 -1.6368 7.3270 50 1 5.0978 -1.0094 6.6057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724717551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:04 Heat of formation + Delta-G solvation = 42.161096 kcal Electronic energy + Delta-G solvation = -28542.718824 eV Core-core repulsion = 24606.219177 eV Total energy + Delta-G solvation = -3936.499646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.55573 -41.08808 -38.95870 -38.20684 -36.85148 -34.64919 -33.64014 -32.73186 -31.95140 -30.70073 -28.84108 -28.43430 -28.39757 -26.56298 -25.08946 -24.20668 -23.76778 -22.64341 -21.30408 -21.08431 -20.68463 -19.14511 -18.52061 -17.74015 -17.66658 -17.28971 -16.69133 -16.62482 -16.05535 -15.64391 -15.36131 -15.22489 -15.08110 -15.05520 -14.82551 -14.34552 -14.01530 -13.93069 -13.75389 -13.33222 -13.30040 -13.25296 -13.08425 -12.98425 -12.92272 -12.78387 -12.77504 -12.39999 -12.30232 -12.22071 -12.01456 -11.97896 -11.70332 -11.57693 -11.52107 -11.45117 -11.39373 -11.28202 -10.91325 -10.60711 -9.76269 -8.99527 -7.95350 -5.24072 0.27470 1.09767 1.11699 1.46393 1.49964 1.56090 1.82008 2.18627 2.56026 2.95298 3.22660 3.37665 3.51160 3.63891 3.65407 3.75969 3.78287 3.80690 3.87692 4.18252 4.32945 4.37684 4.50067 4.52565 4.57261 4.57820 4.59990 4.67942 4.69379 4.77279 4.77802 4.79750 4.87735 4.89802 4.96680 5.00941 5.09249 5.12179 5.16194 5.20545 5.21633 5.31661 5.36402 5.39871 5.48101 5.50316 5.69485 6.27579 6.28089 6.76745 7.08007 7.33544 8.10135 8.34100 9.27855 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.001807 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.965967 B =15488.388310 C =16131.324502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.201 3.799 7 N -0.492 5.492 8 C 0.118 3.882 9 C 0.617 3.383 10 O -0.572 6.572 11 N -0.598 5.598 12 C 0.118 3.882 13 C -0.119 4.119 14 C -0.083 4.083 15 H 0.090 0.910 16 C -0.098 4.098 17 C 0.147 3.853 18 N -0.747 5.747 19 C -0.251 4.251 20 H 0.071 0.929 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.277 1.277 26 H -0.281 1.281 27 C 0.110 3.890 28 N -0.276 5.276 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.273 0.727 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.069 0.931 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 -0.712 -37.967 41.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.218 5.218 8 C -0.160 4.160 9 C 0.402 3.598 10 O -0.450 6.450 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.156 4.156 14 C -0.103 4.103 15 H 0.109 0.891 16 C -0.136 4.136 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.217 1.217 25 H -0.203 1.203 26 H -0.207 1.207 27 C -0.012 4.012 28 N -0.117 5.117 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.288 0.712 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.207 0.793 48 H 0.061 0.939 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.824 0.450 -37.516 40.719 hybrid contribution 0.497 0.582 1.168 1.397 sum -15.326 1.032 -36.348 39.461 Atomic orbital electron populations 1.22286 0.90065 1.04721 1.04275 1.21661 0.96491 0.93897 0.80279 1.22018 1.01402 0.93311 1.03988 1.22301 1.01904 1.02408 0.94656 1.48205 1.40205 1.06939 1.12936 1.27307 0.99496 0.86815 0.95708 1.71335 1.17352 1.24770 1.08387 1.23210 1.08213 0.87091 0.97505 1.16290 0.78133 0.83499 0.81851 1.90796 1.55532 1.23817 1.74807 1.48263 1.59890 1.07623 1.17245 1.22221 1.02098 0.77376 0.98678 1.22794 0.98734 0.98125 0.95977 1.22210 0.99579 0.92987 0.95488 0.89129 1.21512 0.98828 0.99891 0.93410 1.20874 0.96690 0.96597 0.83772 1.42570 1.48411 1.42730 1.05247 1.19607 1.14813 1.12543 0.91293 0.91072 1.25579 1.02403 1.00523 0.98245 1.69807 1.45009 1.34726 1.12256 0.85203 0.78871 0.78045 0.77590 1.21733 1.20304 1.20682 1.22440 0.96979 0.99334 0.82453 1.74236 1.14282 1.26486 0.96667 0.93716 0.86888 0.89719 0.93134 0.87198 0.93240 0.88850 0.86856 0.92465 0.71165 0.89934 0.90144 0.87272 0.89589 0.90407 0.91722 0.96920 0.96312 0.79261 0.93913 0.91294 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 8.72 71.98 0.63 0.08 16 2 C 0.16 1.13 1.23 3.60 0.00 1.14 16 3 C -0.15 -1.53 8.05 71.98 0.58 -0.95 16 4 C -0.15 -0.07 8.28 71.98 0.60 0.52 16 5 N -0.29 -4.44 3.16 -311.59 -0.99 -5.42 16 6 C 0.20 2.48 11.71 180.30 2.11 4.59 16 7 N -0.49 -10.24 8.87 -193.02 -1.71 -11.95 16 8 C 0.12 3.36 7.80 137.12 1.07 4.43 16 9 C 0.62 21.09 7.86 86.79 0.68 21.77 16 10 O -0.57 -24.20 17.34 -3.89 -0.07 -24.27 16 11 N -0.60 -17.34 3.33 -815.01 -2.71 -20.05 16 12 C 0.12 2.47 5.52 86.73 0.48 2.95 16 13 C -0.12 -2.22 6.42 31.78 0.20 -2.01 16 14 C -0.08 -2.10 3.04 -9.39 -0.03 -2.12 16 15 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.10 -3.06 4.84 30.59 0.15 -2.91 16 17 C 0.15 6.14 6.14 86.38 0.53 6.67 16 18 N -0.75 -39.76 5.60 -343.46 -1.92 -41.68 16 19 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 23 Si 0.97 47.81 29.55 68.60 2.03 49.83 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 27 C 0.11 3.31 5.71 86.86 0.50 3.81 16 28 N -0.28 -7.30 11.09 -52.43 -0.58 -7.89 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.05 0.78 8.02 -2.39 -0.02 0.76 16 35 H 0.09 -0.35 7.34 -2.39 -0.02 -0.36 16 36 H 0.11 -0.43 8.14 -2.38 -0.02 -0.45 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.27 0.02 7.53 -2.91 -0.02 0.00 16 39 H 0.08 1.64 7.63 -2.39 -0.02 1.62 16 40 H 0.08 1.61 7.75 -2.39 -0.02 1.59 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.05 8.03 -2.39 -0.02 2.03 16 45 H 0.01 0.56 7.59 -2.39 -0.02 0.54 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.38 20.82 7.67 -92.71 -0.71 20.11 16 48 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 49 H 0.07 2.15 7.96 -2.39 -0.02 2.13 16 50 H 0.06 2.11 8.00 -2.39 -0.02 2.09 16 Total: -1.00 -85.18 405.39 3.35 -81.84 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.21 Total: 19.88 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 8.81 Total: 20.05 kcal Atomic # 7 Polarization: -139.70 SS G_CDS: -7.63 Total: -147.33 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -85.18 3.35 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724717551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.998 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds