Wall clock time and date at job start Tue Mar 31 2020 19:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00134 * 2 1 4 4 C 1.53006 * 109.47266 * 124.99762 * 3 2 1 5 5 N 1.46495 * 109.47458 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59544 * 124.99993 * 5 4 3 7 7 C 1.36597 * 106.84099 * 180.24606 * 6 5 4 8 8 C 1.47524 * 125.76654 * 179.71457 * 7 6 5 9 9 O 1.21596 * 120.00692 * 353.74478 * 8 7 6 10 10 N 1.34782 * 119.99407 * 173.74728 * 8 7 6 11 11 C 1.46498 * 120.00379 * 3.98039 * 10 8 7 12 12 C 1.53002 * 109.46838 * 83.52066 * 11 10 8 13 13 N 1.46502 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.46497 * 120.00294 * 89.99493 * 13 12 11 15 15 C 1.36942 * 119.99419 * 269.99614 * 13 12 11 16 16 H 1.08002 * 120.00250 * 22.53633 * 15 13 12 17 17 C 1.38811 * 119.99633 * 202.52640 * 15 13 12 18 18 N 1.31618 * 120.00352 * 10.76051 * 17 15 13 19 19 Si 1.86807 * 119.99801 * 190.76225 * 17 15 13 20 20 H 1.48496 * 109.46737 * 90.00279 * 19 17 15 21 21 H 1.48500 * 109.46940 * 210.00002 * 19 17 15 22 22 H 1.48499 * 109.46931 * 330.00355 * 19 17 15 23 23 C 1.46506 * 119.99730 * 183.98143 * 10 8 7 24 24 C 1.52999 * 109.46916 * 116.06701 * 23 10 8 25 25 C 1.52995 * 109.47224 * 236.06719 * 23 10 8 26 26 N 1.34397 * 108.45673 * 359.56959 * 7 6 5 27 27 N 1.28761 * 109.52640 * 0.44322 * 26 7 6 28 28 H 1.08002 * 120.00206 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99866 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47580 * 5.00235 * 3 2 1 32 32 H 1.09004 * 109.47537 * 244.99588 * 3 2 1 33 33 H 1.09005 * 109.46822 * 59.99846 * 4 3 2 34 34 H 1.08995 * 109.47213 * 300.00494 * 4 3 2 35 35 H 1.08001 * 126.58000 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.47143 * 203.51937 * 11 10 8 37 37 H 1.09001 * 109.46823 * 323.52387 * 11 10 8 38 38 H 1.09004 * 109.46904 * 300.00252 * 12 11 10 39 39 H 1.08995 * 109.47560 * 59.99721 * 12 11 10 40 40 H 1.09003 * 109.46905 * 93.33587 * 14 13 12 41 41 H 1.09000 * 109.47166 * 213.33045 * 14 13 12 42 42 H 1.09001 * 109.47010 * 333.33451 * 14 13 12 43 43 H 0.96999 * 120.00172 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.47195 * 356.07409 * 23 10 8 45 45 H 1.09007 * 109.47140 * 60.00309 * 24 23 10 46 46 H 1.09004 * 109.46902 * 179.97438 * 24 23 10 47 47 H 1.08998 * 109.47698 * 300.00477 * 24 23 10 48 48 H 1.09002 * 109.47093 * 60.00117 * 25 23 10 49 49 H 1.08995 * 109.47200 * 180.02562 * 25 23 10 50 50 H 1.08997 * 109.47598 * 300.00443 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 7 3.7680 2.6014 1.1814 6 6 3.8495 3.4828 2.1982 7 6 4.6249 4.5194 1.7622 8 6 4.9795 5.7192 2.5439 9 8 4.4810 5.9014 3.6379 10 7 5.8560 6.6135 2.0453 11 6 6.3899 6.4399 0.6922 12 6 5.4009 7.0146 -0.3239 13 7 5.9345 6.8405 -1.6771 14 6 5.6283 5.6244 -2.4344 15 6 6.7196 7.8146 -2.2340 16 1 7.2437 8.5141 -1.5997 17 6 6.8419 7.9027 -3.6139 18 7 6.0482 7.1971 -4.3914 19 14 8.1331 9.0228 -4.3675 20 1 9.3973 8.2662 -4.5527 21 1 7.6536 9.5154 -5.6838 22 1 8.3746 10.1770 -3.4649 23 6 6.2748 7.7593 2.8567 24 6 7.7746 7.6605 3.1428 25 6 5.9849 9.0553 2.0971 26 7 5.0128 4.2599 0.5019 27 7 4.5200 3.1321 0.1235 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2355 2.1130 35 1 3.3866 3.3895 3.1695 36 1 7.3426 6.9627 0.6077 37 1 6.5390 5.3785 0.4939 38 1 4.4482 6.4918 -0.2393 39 1 5.2517 8.0759 -0.1255 40 1 4.7492 5.7951 -3.0558 41 1 6.4770 5.3678 -3.0684 42 1 5.4309 4.8056 -1.7426 43 1 6.1334 7.2589 -5.3557 44 1 5.7247 7.7587 3.7976 45 1 8.3249 7.6611 2.2018 46 1 8.0863 8.5132 3.7461 47 1 7.9813 6.7371 3.6839 48 1 4.9164 9.1256 1.8932 49 1 6.2969 9.9077 2.7005 50 1 6.5350 9.0559 1.1561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725731975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:33 Heat of formation + Delta-G solvation = 120.509857 kcal Electronic energy + Delta-G solvation = -30129.985988 eV Core-core repulsion = 26196.883799 eV Total energy + Delta-G solvation = -3933.102189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13608 -39.53970 -36.63121 -36.56792 -35.08433 -33.94662 -32.39568 -31.07865 -30.67466 -29.31209 -27.88190 -26.95764 -25.62870 -24.81697 -23.92986 -23.28861 -21.80177 -20.96383 -20.41559 -20.23932 -18.86926 -17.43769 -16.68589 -16.34850 -16.18257 -16.02056 -15.50633 -15.02566 -14.71781 -14.59522 -14.14607 -13.96688 -13.71643 -13.53613 -13.31888 -12.98689 -12.89267 -12.79729 -12.51283 -12.31124 -12.06404 -11.93092 -11.84181 -11.67572 -11.52331 -11.35698 -11.03445 -10.82813 -10.69791 -10.63113 -10.55793 -10.44285 -10.22116 -9.90095 -9.79386 -9.76307 -9.72535 -9.44174 -9.15222 -8.53900 -8.23796 -6.54309 -5.56940 -3.03038 1.19734 1.78286 1.93699 2.10137 3.23844 3.45239 3.49971 3.51271 3.52438 4.13571 4.28466 4.38913 4.58048 4.61346 4.71233 4.80576 4.86766 4.98593 5.12730 5.22174 5.30119 5.40924 5.45728 5.52811 5.57207 5.64248 5.69159 5.75515 5.79560 5.89731 6.00677 6.02452 6.12401 6.19821 6.29700 6.33029 6.38778 6.41557 6.50283 6.59208 6.67960 7.05435 7.13780 7.24581 7.67091 7.71984 7.90543 8.01493 8.11736 8.42102 8.55999 9.40557 10.05035 10.55245 11.47036 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003888 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.941641 B = 7199.138951 C = 9886.042021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C -0.109 4.109 4 C 0.129 3.871 5 N -0.367 5.367 6 C 0.085 3.915 7 C -0.100 4.100 8 C 0.602 3.398 9 O -0.559 6.559 10 N -0.585 5.585 11 C 0.077 3.923 12 C 0.151 3.849 13 N -0.595 5.595 14 C 0.164 3.836 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.907 5.907 19 Si 0.901 3.099 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.281 1.281 23 C 0.133 3.867 24 C -0.161 4.161 25 C -0.163 4.163 26 N -0.175 5.175 27 N -0.061 5.061 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.199 0.801 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.033 0.967 39 H 0.043 0.957 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.019 0.981 43 H 0.250 0.750 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -12.313 15.562 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.174 4.174 3 C -0.147 4.147 4 C 0.008 3.992 5 N -0.152 5.152 6 C -0.071 4.071 7 C -0.238 4.238 8 C 0.389 3.611 9 O -0.438 6.438 10 N -0.315 5.315 11 C -0.048 4.048 12 C 0.023 3.977 13 N -0.318 5.318 14 C 0.019 3.981 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.553 5.553 19 Si 0.732 3.268 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.206 1.206 23 C 0.030 3.970 24 C -0.219 4.219 25 C -0.221 4.221 26 N -0.049 5.049 27 N -0.041 5.041 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.216 0.784 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.538 -12.469 14.480 20.196 hybrid contribution 0.298 0.579 0.274 0.706 sum -6.240 -11.890 14.754 19.950 Atomic orbital electron populations 1.23948 0.95912 1.02220 0.99893 1.22749 0.95993 0.97696 1.01008 1.21045 0.98096 0.96612 0.98904 1.21948 0.94389 0.81655 1.01244 1.50612 1.36215 1.17337 1.11013 1.23249 0.98846 0.89716 0.95333 1.21467 1.08501 0.99969 0.93892 1.16828 0.78916 0.81139 0.84221 1.90733 1.54819 1.77050 1.21198 1.48022 1.42970 1.23804 1.16735 1.23022 0.99030 1.04003 0.78787 1.20982 0.93701 0.97662 0.85393 1.43786 1.58304 1.18438 1.11255 1.20810 0.99250 0.85272 0.92763 1.19198 1.20041 1.09109 0.89631 0.91670 1.24993 0.98868 0.99320 0.96544 1.70105 1.38202 1.43940 1.03038 0.86306 0.81487 0.80416 0.78627 1.21658 1.21912 1.20630 1.21052 0.95371 0.85347 0.95205 1.22150 0.95652 1.01812 1.02253 1.22213 1.02604 0.95862 1.01372 1.75064 1.14049 1.06405 1.09354 1.82143 1.08426 1.05615 1.07908 0.88135 0.88371 0.86791 0.90501 0.88702 0.88374 0.87918 0.78376 0.90903 0.88383 0.94863 0.93844 0.96497 0.94305 0.96271 0.94006 0.88595 0.91779 0.91660 0.92662 0.92195 0.91920 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.16 -0.96 9.52 -36.03 -0.34 -1.30 16 3 C -0.11 -0.83 5.86 -27.88 -0.16 -1.00 16 4 C 0.13 0.89 6.52 -4.04 -0.03 0.86 16 5 N -0.37 -4.19 3.69 -61.06 -0.23 -4.42 16 6 C 0.09 1.01 11.28 -16.84 -0.19 0.82 16 7 C -0.10 -1.57 6.52 -83.55 -0.55 -2.12 16 8 C 0.60 10.19 7.62 -12.47 -0.09 10.09 16 9 O -0.56 -10.01 16.21 5.28 0.09 -9.92 16 10 N -0.58 -9.69 2.39 -167.33 -0.40 -10.09 16 11 C 0.08 1.43 4.45 -4.04 -0.02 1.41 16 12 C 0.15 3.30 5.26 -4.04 -0.02 3.27 16 13 N -0.60 -15.44 2.93 -181.12 -0.53 -15.97 16 14 C 0.16 4.28 8.96 59.85 0.54 4.81 16 15 C -0.25 -6.97 9.67 -15.06 -0.15 -7.11 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 17 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 18 N -0.91 -27.26 10.57 55.49 0.59 -26.68 16 19 Si 0.90 22.30 29.57 -169.99 -5.03 17.27 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.13 1.91 3.23 -67.93 -0.22 1.69 16 24 C -0.16 -2.01 9.24 37.16 0.34 -1.66 16 25 C -0.16 -2.29 8.11 37.16 0.30 -1.98 16 26 N -0.18 -3.07 5.92 32.85 0.19 -2.88 16 27 N -0.06 -0.97 13.54 60.35 0.82 -0.15 16 28 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.10 0.61 7.84 -52.49 -0.41 0.19 16 30 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 31 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.07 1.38 6.49 -51.93 -0.34 1.05 16 37 H 0.10 1.94 5.29 -51.93 -0.27 1.66 16 38 H 0.03 0.74 6.97 -51.93 -0.36 0.38 16 39 H 0.04 0.96 6.08 -51.93 -0.32 0.64 16 40 H 0.02 0.48 7.47 -51.93 -0.39 0.09 16 41 H 0.04 1.09 7.12 -51.93 -0.37 0.72 16 42 H 0.02 0.45 6.21 -51.93 -0.32 0.12 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.10 1.40 6.90 -51.93 -0.36 1.04 16 45 H 0.06 0.85 6.85 -51.92 -0.36 0.50 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.07 1.13 6.66 -51.93 -0.35 0.79 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -33.98 400.67 -6.73 -40.71 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.01 Total: -0.96 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.26 Total: 7.03 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.44 Total: -60.17 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.98 -6.73 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725731975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.221 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds