Wall clock time and date at job start Tue Mar 31 2020 19:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00134 * 2 1 4 4 C 1.53006 * 109.47266 * 124.99762 * 3 2 1 5 5 N 1.46495 * 109.47458 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59544 * 124.99993 * 5 4 3 7 7 C 1.36597 * 106.84099 * 180.24606 * 6 5 4 8 8 C 1.47524 * 125.76654 * 179.71457 * 7 6 5 9 9 O 1.21596 * 120.00692 * 353.74478 * 8 7 6 10 10 N 1.34782 * 119.99407 * 173.74728 * 8 7 6 11 11 C 1.46498 * 120.00379 * 3.98039 * 10 8 7 12 12 C 1.53002 * 109.46838 * 83.52066 * 11 10 8 13 13 N 1.46502 * 109.47121 * 180.02562 * 12 11 10 14 14 C 1.46497 * 120.00294 * 89.99493 * 13 12 11 15 15 C 1.36942 * 119.99419 * 269.99614 * 13 12 11 16 16 H 1.08002 * 120.00250 * 22.53633 * 15 13 12 17 17 C 1.38811 * 119.99633 * 202.52640 * 15 13 12 18 18 N 1.31618 * 120.00352 * 10.76051 * 17 15 13 19 19 Si 1.86807 * 119.99801 * 190.76225 * 17 15 13 20 20 H 1.48496 * 109.46737 * 90.00279 * 19 17 15 21 21 H 1.48500 * 109.46940 * 210.00002 * 19 17 15 22 22 H 1.48499 * 109.46931 * 330.00355 * 19 17 15 23 23 C 1.46506 * 119.99730 * 183.98143 * 10 8 7 24 24 C 1.52999 * 109.46916 * 116.06701 * 23 10 8 25 25 C 1.52995 * 109.47224 * 236.06719 * 23 10 8 26 26 N 1.34397 * 108.45673 * 359.56959 * 7 6 5 27 27 N 1.28761 * 109.52640 * 0.44322 * 26 7 6 28 28 H 1.08002 * 120.00206 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99866 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47580 * 5.00235 * 3 2 1 32 32 H 1.09004 * 109.47537 * 244.99588 * 3 2 1 33 33 H 1.09005 * 109.46822 * 59.99846 * 4 3 2 34 34 H 1.08995 * 109.47213 * 300.00494 * 4 3 2 35 35 H 1.08001 * 126.58000 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.47143 * 203.51937 * 11 10 8 37 37 H 1.09001 * 109.46823 * 323.52387 * 11 10 8 38 38 H 1.09004 * 109.46904 * 300.00252 * 12 11 10 39 39 H 1.08995 * 109.47560 * 59.99721 * 12 11 10 40 40 H 1.09003 * 109.46905 * 93.33587 * 14 13 12 41 41 H 1.09000 * 109.47166 * 213.33045 * 14 13 12 42 42 H 1.09001 * 109.47010 * 333.33451 * 14 13 12 43 43 H 0.96999 * 120.00172 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.47195 * 356.07409 * 23 10 8 45 45 H 1.09007 * 109.47140 * 60.00309 * 24 23 10 46 46 H 1.09004 * 109.46902 * 179.97438 * 24 23 10 47 47 H 1.08998 * 109.47698 * 300.00477 * 24 23 10 48 48 H 1.09002 * 109.47093 * 60.00117 * 25 23 10 49 49 H 1.08995 * 109.47200 * 180.02562 * 25 23 10 50 50 H 1.08997 * 109.47598 * 300.00443 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 7 3.7680 2.6014 1.1814 6 6 3.8495 3.4828 2.1982 7 6 4.6249 4.5194 1.7622 8 6 4.9795 5.7192 2.5439 9 8 4.4810 5.9014 3.6379 10 7 5.8560 6.6135 2.0453 11 6 6.3899 6.4399 0.6922 12 6 5.4009 7.0146 -0.3239 13 7 5.9345 6.8405 -1.6771 14 6 5.6283 5.6244 -2.4344 15 6 6.7196 7.8146 -2.2340 16 1 7.2437 8.5141 -1.5997 17 6 6.8419 7.9027 -3.6139 18 7 6.0482 7.1971 -4.3914 19 14 8.1331 9.0228 -4.3675 20 1 9.3973 8.2662 -4.5527 21 1 7.6536 9.5154 -5.6838 22 1 8.3746 10.1770 -3.4649 23 6 6.2748 7.7593 2.8567 24 6 7.7746 7.6605 3.1428 25 6 5.9849 9.0553 2.0971 26 7 5.0128 4.2599 0.5019 27 7 4.5200 3.1321 0.1235 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.7400 0.5064 1.0921 34 1 2.4773 1.2355 2.1130 35 1 3.3866 3.3895 3.1695 36 1 7.3426 6.9627 0.6077 37 1 6.5390 5.3785 0.4939 38 1 4.4482 6.4918 -0.2393 39 1 5.2517 8.0759 -0.1255 40 1 4.7492 5.7951 -3.0558 41 1 6.4770 5.3678 -3.0684 42 1 5.4309 4.8056 -1.7426 43 1 6.1334 7.2589 -5.3557 44 1 5.7247 7.7587 3.7976 45 1 8.3249 7.6611 2.2018 46 1 8.0863 8.5132 3.7461 47 1 7.9813 6.7371 3.6839 48 1 4.9164 9.1256 1.8932 49 1 6.2969 9.9077 2.7005 50 1 6.5350 9.0559 1.1561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725731975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:32 Heat of formation + Delta-G solvation = 100.201023 kcal Electronic energy + Delta-G solvation = -30130.866645 eV Core-core repulsion = 26196.883799 eV Total energy + Delta-G solvation = -3933.982846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.21582 -40.83225 -38.10446 -37.30046 -36.86473 -34.79775 -33.83756 -32.87462 -31.74456 -30.13288 -29.61416 -28.05214 -27.79489 -25.60811 -25.38678 -24.80448 -22.74390 -22.37577 -22.03577 -20.74900 -20.09117 -18.69702 -18.50298 -17.70993 -17.25634 -16.99777 -16.77036 -16.20657 -16.03327 -15.75680 -15.42725 -15.24483 -15.06666 -14.96170 -14.58798 -14.30804 -14.03255 -14.01155 -13.86375 -13.60875 -13.25854 -13.14477 -12.96045 -12.85968 -12.76095 -12.70598 -12.54744 -12.32229 -12.19158 -12.14057 -12.02049 -11.90052 -11.72518 -11.65129 -11.44061 -11.20437 -10.92331 -10.61554 -10.33946 -10.22984 -9.73686 -8.65488 -7.74572 -5.24005 0.21680 0.70495 1.12610 1.43332 1.48407 1.50251 1.58584 1.98360 2.25116 2.55966 3.18075 3.38438 3.39843 3.69973 3.80528 3.94389 3.98615 4.03067 4.07163 4.19043 4.22135 4.25070 4.37534 4.38729 4.42552 4.53631 4.68896 4.73095 4.77699 4.79814 4.85836 4.94797 4.98638 5.00877 5.07517 5.09402 5.15166 5.29130 5.37220 5.43389 5.52062 5.58529 5.66235 5.70426 5.72508 5.78531 5.84537 6.34232 6.40884 6.93611 7.17379 7.22474 7.94580 8.41482 9.28563 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003888 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.941641 B = 7199.138951 C = 9886.042021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.105 4.105 4 C 0.121 3.879 5 N -0.351 5.351 6 C 0.112 3.888 7 C -0.133 4.133 8 C 0.602 3.398 9 O -0.570 6.570 10 N -0.587 5.587 11 C 0.102 3.898 12 C 0.161 3.839 13 N -0.609 5.609 14 C 0.188 3.812 15 C -0.256 4.256 16 H 0.074 0.926 17 C -0.057 4.057 18 N -0.942 5.942 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.129 3.871 24 C -0.154 4.154 25 C -0.157 4.157 26 N -0.211 5.211 27 N -0.095 5.095 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.240 0.760 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.039 0.961 40 H -0.015 1.015 41 H 0.011 0.989 42 H 0.042 0.958 43 H 0.245 0.755 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.091 0.909 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -12.894 17.978 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.143 4.143 4 C 0.002 3.998 5 N -0.135 5.135 6 C -0.047 4.047 7 C -0.272 4.272 8 C 0.389 3.611 9 O -0.450 6.450 10 N -0.318 5.318 11 C -0.023 4.023 12 C 0.033 3.967 13 N -0.333 5.333 14 C 0.042 3.958 15 C -0.386 4.386 16 H 0.092 0.908 17 C -0.251 4.251 18 N -0.590 5.590 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.190 1.190 23 C 0.027 3.973 24 C -0.211 4.211 25 C -0.215 4.215 26 N -0.084 5.084 27 N -0.075 5.075 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.003 0.997 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.453 -13.061 16.927 22.333 hybrid contribution 0.120 0.672 -0.367 0.775 sum -6.333 -12.389 16.560 21.629 Atomic orbital electron populations 1.24094 0.96018 1.02707 0.99355 1.22751 0.95986 0.97362 1.01402 1.20960 0.97880 0.97292 0.98209 1.22443 0.94605 0.80066 1.02677 1.50888 1.34766 1.18064 1.09763 1.23802 0.96636 0.87960 0.96259 1.21603 1.10662 1.01031 0.93930 1.17012 0.78465 0.81402 0.84181 1.90713 1.55181 1.77501 1.21642 1.48024 1.43110 1.24677 1.15966 1.22426 0.97547 1.03117 0.79227 1.20985 0.94036 0.97412 0.84237 1.43978 1.58494 1.18069 1.12717 1.20452 0.96545 0.86319 0.92438 1.19572 1.19874 1.09137 0.90013 0.90815 1.25811 1.01038 1.01191 0.97088 1.70295 1.40019 1.45806 1.02850 0.85235 0.78701 0.78893 0.77442 1.21362 1.22477 1.19007 1.21250 0.96708 0.84565 0.94798 1.22098 0.93897 1.03022 1.02123 1.22161 1.01426 0.96989 1.00883 1.74972 1.15357 1.07467 1.10560 1.82041 1.09990 1.05723 1.09719 0.86715 0.88928 0.85143 0.91691 0.91214 0.86516 0.84004 0.74376 0.91163 0.89087 0.95735 0.94253 0.99709 0.96989 0.93923 0.94585 0.88379 0.92830 0.89084 0.92640 0.93518 0.89054 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 14.32 67.78 0.97 -0.95 16 2 C -0.16 -1.64 9.52 25.64 0.24 -1.40 16 3 C -0.11 -1.51 5.86 29.85 0.17 -1.34 16 4 C 0.12 1.36 6.52 86.38 0.56 1.92 16 5 N -0.35 -7.43 3.69 -347.10 -1.28 -8.71 16 6 C 0.11 2.40 11.28 83.85 0.95 3.34 16 7 C -0.13 -4.10 6.52 40.82 0.27 -3.83 16 8 C 0.60 19.89 7.62 86.69 0.66 20.55 16 9 O -0.57 -19.58 16.21 -4.02 -0.07 -19.65 16 10 N -0.59 -19.22 2.39 -801.56 -1.91 -21.13 16 11 C 0.10 3.86 4.45 86.38 0.38 4.24 16 12 C 0.16 7.15 5.26 86.38 0.45 7.60 16 13 N -0.61 -32.45 2.93 -726.93 -2.13 -34.58 16 14 C 0.19 10.22 8.96 127.77 1.15 11.37 16 15 C -0.26 -14.44 9.67 84.03 0.81 -13.63 16 16 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16 17 C -0.06 -3.30 5.13 84.86 0.44 -2.87 16 18 N -0.94 -58.39 10.57 21.65 0.23 -58.16 16 19 Si 0.97 46.34 29.57 68.60 2.03 48.36 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.13 3.54 3.23 44.99 0.15 3.69 16 24 C -0.15 -3.56 9.24 71.98 0.67 -2.89 16 25 C -0.16 -4.25 8.11 71.98 0.58 -3.66 16 26 N -0.21 -7.47 5.92 -50.00 -0.30 -7.77 16 27 N -0.09 -3.02 13.54 37.02 0.50 -2.52 16 28 H 0.11 0.87 8.06 -2.91 -0.02 0.85 16 29 H 0.09 1.05 7.84 -2.91 -0.02 1.03 16 30 H 0.13 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.06 1.07 7.79 -2.39 -0.02 1.06 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.14 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.24 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.07 2.68 6.49 -2.39 -0.02 2.66 16 37 H 0.09 3.66 5.29 -2.39 -0.01 3.65 16 38 H 0.02 1.13 6.97 -2.39 -0.02 1.11 16 39 H 0.04 1.76 6.08 -2.39 -0.01 1.75 16 40 H -0.02 -0.93 7.47 -2.39 -0.02 -0.95 16 41 H 0.01 0.67 7.12 -2.39 -0.02 0.66 16 42 H 0.04 2.09 6.21 -2.39 -0.01 2.08 16 43 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.10 2.70 6.90 -2.39 -0.02 2.68 16 45 H 0.05 1.36 6.85 -2.38 -0.02 1.34 16 46 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.36 8.04 -2.39 -0.02 1.35 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.05 1.60 6.66 -2.39 -0.02 1.58 16 Total: -1.00 -75.91 400.67 6.45 -69.46 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.92 Total: 12.54 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 8.45 Total: 22.15 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -4.89 Total: -132.87 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.07 Total: -19.65 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.91 6.45 -69.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725731975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.663 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds