Wall clock time and date at job start Tue Mar 31 2020 19:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47268 * 2 1 4 4 N 1.46495 * 109.47554 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99832 * 275.30673 * 4 3 2 6 6 H 1.08000 * 120.00168 * 37.58397 * 5 4 3 7 7 C 1.38814 * 120.00163 * 217.57709 * 5 4 3 8 8 N 1.31615 * 119.99973 * 21.42769 * 7 5 4 9 9 Si 1.86795 * 120.00125 * 201.42571 * 7 5 4 10 10 H 1.48500 * 109.47288 * 59.99918 * 9 7 5 11 11 H 1.48504 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47151 * 299.99922 * 9 7 5 13 13 C 1.46496 * 120.00095 * 95.30832 * 4 3 2 14 14 C 1.53000 * 109.47076 * 270.00125 * 13 4 3 15 15 N 1.46496 * 109.47076 * 180.02562 * 14 13 4 16 16 C 1.34782 * 120.00314 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99449 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00456 * 179.97438 * 16 15 14 19 19 N 1.46499 * 109.47260 * 179.97438 * 18 16 15 20 20 N 1.29104 * 126.00802 * 269.69371 * 19 18 16 21 21 N 1.29026 * 110.25609 * 179.77150 * 20 19 18 22 22 C 1.32912 * 108.63388 * 0.41994 * 21 20 19 23 23 C 1.34399 * 126.00512 * 89.99855 * 19 18 16 24 24 C 1.50540 * 129.25461 * 0.21561 * 23 19 18 25 25 C 1.53427 * 108.32349 * 163.46018 * 24 23 19 26 26 C 1.53105 * 109.55986 * 49.71744 * 25 24 23 27 27 C 1.50594 * 129.16030 * 179.85976 * 22 21 20 28 28 H 1.08998 * 109.47231 * 299.99783 * 1 2 3 29 29 H 1.08996 * 109.46993 * 60.00160 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47231 * 240.00217 * 2 1 3 32 32 H 1.08998 * 109.47493 * 119.99714 * 2 1 3 33 33 H 1.09008 * 109.47264 * 59.99679 * 3 2 1 34 34 H 1.09007 * 109.46861 * 300.00322 * 3 2 1 35 35 H 0.97002 * 120.00518 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47156 * 150.00263 * 13 4 3 37 37 H 1.09004 * 109.47082 * 30.00002 * 13 4 3 38 38 H 1.08993 * 109.47153 * 60.00083 * 14 13 4 39 39 H 1.09004 * 109.47065 * 299.99888 * 14 13 4 40 40 H 0.97006 * 120.00418 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.47023 * 60.00187 * 18 16 15 42 42 H 1.09002 * 109.46684 * 300.00372 * 18 16 15 43 43 H 1.09001 * 109.68838 * 283.16505 * 24 23 19 44 44 H 1.08995 * 109.69070 * 43.74555 * 24 23 19 45 45 H 1.08999 * 109.45636 * 169.74281 * 25 24 23 46 46 H 1.09003 * 109.45561 * 289.70176 * 25 24 23 47 47 H 1.09004 * 109.45276 * 49.96372 * 26 25 24 48 48 H 1.08994 * 109.45575 * 169.90607 * 26 25 24 49 49 H 1.09002 * 109.69397 * 43.75606 * 27 22 21 50 50 H 1.09002 * 109.72599 * 283.19511 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8186 0.6871 1.9619 7 6 5.3623 2.0512 1.3716 8 7 5.6024 3.1239 0.6478 9 14 6.5989 1.4955 2.6566 10 1 7.0675 0.1243 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4951 3.9951 13 6 4.2369 1.5602 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1009 16 6 5.5615 -0.8257 -3.7901 17 8 5.2590 -1.9202 -3.3641 18 6 6.3145 -0.7048 -5.0898 19 7 6.5597 -2.0409 -5.6384 20 7 7.5940 -2.7783 -5.4072 21 7 7.4952 -3.8977 -6.0412 22 6 6.3560 -3.8989 -6.7259 23 6 5.7501 -2.7122 -6.4752 24 6 4.4270 -2.2951 -7.0596 25 6 4.1159 -3.2104 -8.2510 26 6 4.2950 -4.6727 -7.8345 27 6 5.7854 -4.9674 -7.6206 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.4214 3.6263 0.7820 36 1 5.1894 2.0597 -1.0871 37 1 3.6475 2.1422 -1.9727 38 1 3.5393 -0.3347 -2.0147 39 1 5.0812 -0.4172 -1.1292 40 1 5.4672 1.1577 -3.4411 41 1 7.2668 -0.2048 -4.9129 42 1 5.7249 -0.1232 -5.7985 43 1 3.6453 -2.3941 -6.3065 44 1 4.4843 -1.2601 -7.3965 45 1 3.0877 -3.0484 -8.5746 46 1 4.7952 -2.9811 -9.0721 47 1 3.7523 -4.8550 -6.9069 48 1 3.9049 -5.3235 -8.6170 49 1 5.9029 -5.9430 -7.1488 50 1 6.3028 -4.9588 -8.5800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731869255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:33 Heat of formation + Delta-G solvation = 62.762878 kcal Electronic energy + Delta-G solvation = -29297.840024 eV Core-core repulsion = 25362.233738 eV Total energy + Delta-G solvation = -3935.606286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.45075 -39.57424 -37.28620 -36.62523 -34.88787 -34.44389 -32.96743 -31.11354 -30.74673 -30.25473 -29.27632 -27.49861 -25.63768 -24.34821 -23.67037 -22.83290 -21.96414 -21.00827 -20.53965 -20.09619 -19.77405 -17.81160 -17.42625 -16.71265 -16.01573 -15.68487 -15.33780 -15.05127 -14.96834 -14.42297 -14.24256 -14.21116 -14.01216 -13.98705 -13.75695 -13.52666 -13.15586 -13.02582 -12.84838 -12.42976 -12.35182 -11.65016 -11.62140 -11.60659 -11.41922 -11.28182 -11.26985 -11.24055 -11.01080 -10.78327 -10.57107 -10.55249 -10.46875 -10.44293 -10.15359 -10.01029 -9.83348 -9.60107 -8.87094 -8.78862 -8.55905 -6.71289 -5.92294 -3.50927 1.47298 2.10363 2.51887 2.53850 3.25258 3.33406 3.37625 3.42429 3.98356 4.25525 4.38950 4.43074 4.51270 4.59147 4.64603 4.66356 4.75546 5.09749 5.19058 5.19689 5.24073 5.31826 5.38488 5.51789 5.59296 5.60517 5.68358 5.68587 5.84018 5.90316 5.91187 5.99126 5.99597 6.07655 6.19114 6.20174 6.31308 6.42822 6.45548 6.53518 6.56809 6.63168 6.87346 6.90364 7.09891 7.39755 7.59312 7.72936 8.20932 8.39657 8.51003 9.05879 9.67527 10.24792 11.08046 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002763 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.738345 B =10132.936321 C =11442.217503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.138 3.862 14 C 0.097 3.903 15 N -0.710 5.710 16 C 0.494 3.506 17 O -0.525 6.525 18 C 0.092 3.908 19 N -0.265 5.265 20 N -0.084 5.084 21 N -0.262 5.262 22 C -0.024 4.024 23 C -0.008 4.008 24 C -0.048 4.048 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.030 4.030 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.030 0.970 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -6.153 -19.520 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.010 3.990 14 C -0.028 4.028 15 N -0.362 5.362 16 C 0.276 3.724 17 O -0.401 6.401 18 C -0.034 4.034 19 N -0.056 5.056 20 N -0.061 5.061 21 N -0.127 5.127 22 C -0.164 4.164 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.234 0.766 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.425 -6.859 -18.357 19.894 hybrid contribution -0.063 0.424 0.230 0.486 sum -3.487 -6.436 -18.127 19.549 Atomic orbital electron populations 1.21719 0.97270 1.00441 1.01028 1.22185 0.93872 1.00905 1.01543 1.20949 0.84964 0.92972 0.98988 1.43589 0.99467 1.84733 1.02013 1.18982 1.05745 1.20597 0.93986 0.92064 1.25175 1.00756 0.94461 0.98126 1.69973 1.25784 1.14650 1.42513 0.86471 0.80959 0.78377 0.81636 1.20720 1.21500 1.20543 1.21064 1.00474 0.90905 0.86541 1.22602 0.94778 1.03248 0.82154 1.46054 1.57535 1.07949 1.24667 1.20319 0.80753 0.85687 0.85689 1.90799 1.53947 1.26347 1.69040 1.21935 1.04835 0.80361 0.96258 1.46271 1.14476 1.14573 1.30288 1.78610 1.08535 0.98754 1.20237 1.74783 1.17947 1.11772 1.08190 1.21589 0.94269 0.96443 1.04057 1.21743 0.98012 0.95038 0.99344 1.20217 0.90559 1.00023 0.97890 1.21563 1.02222 0.94550 0.96733 1.21651 0.95607 0.96347 1.02320 1.19922 0.94594 0.95380 0.97066 0.93148 0.93467 0.93792 0.93059 0.92331 0.93475 0.94739 0.93391 0.88291 0.95197 0.92758 0.91505 0.76592 0.84560 0.85162 0.89453 0.90264 0.90500 0.91227 0.91232 0.90627 0.89895 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.15 -2.56 6.23 -26.73 -0.17 -2.73 16 3 C 0.15 2.93 5.72 -4.04 -0.02 2.91 16 4 N -0.58 -13.41 2.43 -173.24 -0.42 -13.83 16 5 C -0.26 -6.87 9.45 -15.06 -0.14 -7.01 16 6 H 0.06 1.62 7.92 -52.49 -0.42 1.21 16 7 C 0.02 0.41 4.95 -17.43 -0.09 0.32 16 8 N -0.89 -23.96 11.47 55.49 0.64 -23.32 16 9 Si 0.90 21.13 29.60 -169.99 -5.03 16.10 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.14 2.85 5.45 -4.04 -0.02 2.83 16 14 C 0.10 1.83 6.00 -4.04 -0.02 1.81 16 15 N -0.71 -10.28 5.56 -60.30 -0.33 -10.61 16 16 C 0.49 7.40 7.90 -10.98 -0.09 7.31 16 17 O -0.53 -10.61 16.43 5.56 0.09 -10.52 16 18 C 0.09 0.97 6.72 -5.19 -0.03 0.94 16 19 N -0.26 -3.71 2.82 -58.43 -0.16 -3.87 16 20 N -0.08 -1.43 13.19 60.35 0.80 -0.64 16 21 N -0.26 -4.43 12.40 33.16 0.41 -4.02 16 22 C -0.02 -0.33 7.11 -83.13 -0.59 -0.92 16 23 C -0.01 -0.10 6.76 -82.50 -0.56 -0.65 16 24 C -0.05 -0.41 5.97 -27.74 -0.17 -0.57 16 25 C -0.11 -0.73 5.90 -26.46 -0.16 -0.89 16 26 C -0.12 -0.88 5.90 -26.46 -0.16 -1.03 16 27 C -0.03 -0.29 6.30 -27.71 -0.17 -0.46 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.93 6.64 -51.93 -0.34 0.58 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.97 8.08 -51.92 -0.42 0.56 16 34 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.10 2.32 5.52 -51.93 -0.29 2.03 16 37 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 38 H 0.05 1.05 6.64 -51.93 -0.34 0.70 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.40 4.44 8.47 -40.82 -0.35 4.09 16 41 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.13 0.80 7.71 -51.93 -0.40 0.40 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 47 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 404.15 15.07 6.09 6.09 Total: -1.00 -34.47 404.15 -8.36 -42.83 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.41 Total: 1.66 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.02 Total: 0.13 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.92 Total: -56.29 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.47 -8.36 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.594 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds