Wall clock time and date at job start Tue Mar 31 2020 19:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47268 * 2 1 4 4 N 1.46495 * 109.47554 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99832 * 275.30673 * 4 3 2 6 6 H 1.08000 * 120.00168 * 37.58397 * 5 4 3 7 7 C 1.38814 * 120.00163 * 217.57709 * 5 4 3 8 8 N 1.31615 * 119.99973 * 21.42769 * 7 5 4 9 9 Si 1.86795 * 120.00125 * 201.42571 * 7 5 4 10 10 H 1.48500 * 109.47288 * 59.99918 * 9 7 5 11 11 H 1.48504 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47151 * 299.99922 * 9 7 5 13 13 C 1.46496 * 120.00095 * 95.30832 * 4 3 2 14 14 C 1.53000 * 109.47076 * 270.00125 * 13 4 3 15 15 N 1.46496 * 109.47076 * 180.02562 * 14 13 4 16 16 C 1.34782 * 120.00314 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99449 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00456 * 179.97438 * 16 15 14 19 19 N 1.46499 * 109.47260 * 179.97438 * 18 16 15 20 20 N 1.29104 * 126.00802 * 269.69371 * 19 18 16 21 21 N 1.29026 * 110.25609 * 179.77150 * 20 19 18 22 22 C 1.32912 * 108.63388 * 0.41994 * 21 20 19 23 23 C 1.34399 * 126.00512 * 89.99855 * 19 18 16 24 24 C 1.50540 * 129.25461 * 0.21561 * 23 19 18 25 25 C 1.53427 * 108.32349 * 163.46018 * 24 23 19 26 26 C 1.53105 * 109.55986 * 49.71744 * 25 24 23 27 27 C 1.50594 * 129.16030 * 179.85976 * 22 21 20 28 28 H 1.08998 * 109.47231 * 299.99783 * 1 2 3 29 29 H 1.08996 * 109.46993 * 60.00160 * 1 2 3 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47231 * 240.00217 * 2 1 3 32 32 H 1.08998 * 109.47493 * 119.99714 * 2 1 3 33 33 H 1.09008 * 109.47264 * 59.99679 * 3 2 1 34 34 H 1.09007 * 109.46861 * 300.00322 * 3 2 1 35 35 H 0.97002 * 120.00518 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47156 * 150.00263 * 13 4 3 37 37 H 1.09004 * 109.47082 * 30.00002 * 13 4 3 38 38 H 1.08993 * 109.47153 * 60.00083 * 14 13 4 39 39 H 1.09004 * 109.47065 * 299.99888 * 14 13 4 40 40 H 0.97006 * 120.00418 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.47023 * 60.00187 * 18 16 15 42 42 H 1.09002 * 109.46684 * 300.00372 * 18 16 15 43 43 H 1.09001 * 109.68838 * 283.16505 * 24 23 19 44 44 H 1.08995 * 109.69070 * 43.74555 * 24 23 19 45 45 H 1.08999 * 109.45636 * 169.74281 * 25 24 23 46 46 H 1.09003 * 109.45561 * 289.70176 * 25 24 23 47 47 H 1.09004 * 109.45276 * 49.96372 * 26 25 24 48 48 H 1.08994 * 109.45575 * 169.90607 * 26 25 24 49 49 H 1.09002 * 109.69397 * 43.75606 * 27 22 21 50 50 H 1.09002 * 109.72599 * 283.19511 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8186 0.6871 1.9619 7 6 5.3623 2.0512 1.3716 8 7 5.6024 3.1239 0.6478 9 14 6.5989 1.4955 2.6566 10 1 7.0675 0.1243 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4951 3.9951 13 6 4.2369 1.5602 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1009 16 6 5.5615 -0.8257 -3.7901 17 8 5.2590 -1.9202 -3.3641 18 6 6.3145 -0.7048 -5.0898 19 7 6.5597 -2.0409 -5.6384 20 7 7.5940 -2.7783 -5.4072 21 7 7.4952 -3.8977 -6.0412 22 6 6.3560 -3.8989 -6.7259 23 6 5.7501 -2.7122 -6.4752 24 6 4.4270 -2.2951 -7.0596 25 6 4.1159 -3.2104 -8.2510 26 6 4.2950 -4.6727 -7.8345 27 6 5.7854 -4.9674 -7.6206 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.4214 3.6263 0.7820 36 1 5.1894 2.0597 -1.0871 37 1 3.6475 2.1422 -1.9727 38 1 3.5393 -0.3347 -2.0147 39 1 5.0812 -0.4172 -1.1292 40 1 5.4672 1.1577 -3.4411 41 1 7.2668 -0.2048 -4.9129 42 1 5.7249 -0.1232 -5.7985 43 1 3.6453 -2.3941 -6.3065 44 1 4.4843 -1.2601 -7.3965 45 1 3.0877 -3.0484 -8.5746 46 1 4.7952 -2.9811 -9.0721 47 1 3.7523 -4.8550 -6.9069 48 1 3.9049 -5.3235 -8.6170 49 1 5.9029 -5.9430 -7.1488 50 1 6.3028 -4.9588 -8.5800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731869255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:32 Heat of formation + Delta-G solvation = 39.689429 kcal Electronic energy + Delta-G solvation = -29298.840564 eV Core-core repulsion = 25362.233738 eV Total energy + Delta-G solvation = -3936.606826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.46334 -40.87324 -38.31495 -37.95405 -36.01196 -35.78705 -34.63465 -32.72542 -31.65312 -31.12731 -30.51087 -28.78865 -27.35934 -25.27544 -25.06870 -23.63043 -23.18145 -22.51507 -21.91877 -21.46259 -20.53490 -19.11337 -18.42218 -18.39038 -17.12154 -17.06555 -16.77859 -16.49712 -16.00303 -15.90375 -15.66925 -14.99332 -14.91659 -14.85788 -14.78066 -14.67345 -14.60896 -14.33763 -14.30070 -13.51169 -13.35092 -13.10272 -13.05653 -12.94618 -12.66173 -12.57197 -12.55815 -12.27683 -12.24439 -12.07106 -11.98793 -11.89212 -11.82027 -11.71497 -11.54453 -11.34109 -11.32463 -10.83660 -10.56490 -10.18059 -9.84042 -8.61542 -7.89730 -5.51713 0.44324 1.19528 1.33573 1.40705 1.44881 1.49377 1.50337 2.09196 2.46481 3.17175 3.17506 3.43465 3.52359 3.71154 3.78544 3.88736 3.90488 4.02509 4.10449 4.19214 4.30452 4.35372 4.43278 4.49590 4.56370 4.58243 4.60893 4.66036 4.70091 4.84295 4.91238 4.97693 5.01695 5.08646 5.12458 5.19902 5.20925 5.22193 5.24385 5.28605 5.34079 5.42048 5.45771 5.55268 5.60592 5.63158 5.71590 6.37169 6.44320 7.04003 7.13465 7.43688 7.80376 8.31019 9.05614 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002763 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.738345 B =10132.936321 C =11442.217503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.272 4.272 6 H 0.048 0.952 7 C -0.023 4.023 8 N -0.906 5.906 9 Si 0.945 3.055 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.698 5.698 16 C 0.496 3.504 17 O -0.583 6.583 18 C 0.095 3.905 19 N -0.268 5.268 20 N -0.131 5.131 21 N -0.301 5.301 22 C -0.042 4.042 23 C -0.003 4.003 24 C -0.049 4.049 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.032 4.032 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.023 0.977 40 H 0.420 0.580 41 H 0.160 0.840 42 H 0.186 0.814 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.102 0.898 49 H 0.076 0.924 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -5.314 -22.204 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.549 5.549 9 Si 0.773 3.227 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.350 5.350 16 C 0.280 3.720 17 O -0.462 6.462 18 C -0.029 4.029 19 N -0.060 5.060 20 N -0.108 5.108 21 N -0.164 5.164 22 C -0.183 4.183 23 C -0.138 4.138 24 C -0.088 4.088 25 C -0.146 4.146 26 C -0.156 4.156 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.258 0.742 41 H 0.178 0.822 42 H 0.203 0.797 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.120 0.880 49 H 0.094 0.906 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.135 -5.984 -21.054 22.482 hybrid contribution 0.406 0.133 1.045 1.129 sum -4.729 -5.851 -20.009 21.377 Atomic orbital electron populations 1.21651 0.94168 1.01725 1.02122 1.22018 0.96495 0.98892 1.00070 1.21055 0.83221 0.94381 0.99285 1.43830 1.00927 1.84993 1.01977 1.19077 1.06313 1.19961 0.94865 0.93438 1.25656 1.01901 0.94748 0.99852 1.70043 1.25993 1.15244 1.43620 0.85711 0.79406 0.77321 0.80216 1.21743 1.21166 1.20101 1.20951 0.99431 0.91611 0.86220 1.21990 0.94239 1.01270 0.83112 1.45775 1.56908 1.09234 1.23127 1.21028 0.79772 0.84467 0.86696 1.90783 1.56204 1.28486 1.70758 1.22259 1.06177 0.79765 0.94712 1.46541 1.14061 1.15257 1.30106 1.78510 1.10617 0.99686 1.22018 1.74703 1.20037 1.12344 1.09359 1.22374 0.93609 0.98095 1.04218 1.22510 0.98801 0.94463 0.98033 1.20484 0.87710 1.02347 0.98280 1.21608 1.03959 0.93128 0.95953 1.21672 0.93558 0.97878 1.02524 1.20123 0.96253 0.93877 0.96880 0.92669 0.91754 0.92448 0.93623 0.94730 0.94731 0.92718 0.93570 0.90735 0.92870 0.93058 0.95883 0.74221 0.82200 0.79656 0.90155 0.87163 0.88005 0.90223 0.92792 0.87980 0.90567 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.13 -4.70 6.23 30.59 0.19 -4.51 16 3 C 0.15 5.72 5.72 86.38 0.49 6.21 16 4 N -0.60 -27.86 2.43 -701.99 -1.71 -29.56 16 5 C -0.27 -14.47 9.45 84.03 0.79 -13.68 16 6 H 0.05 2.61 7.92 -2.91 -0.02 2.58 16 7 C -0.02 -1.23 4.95 84.86 0.42 -0.81 16 8 N -0.91 -49.23 11.47 21.65 0.25 -48.98 16 9 Si 0.94 44.17 29.60 68.60 2.03 46.20 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.15 5.96 5.45 86.38 0.47 6.43 16 14 C 0.12 4.57 6.00 86.38 0.52 5.09 16 15 N -0.70 -19.35 5.56 -463.07 -2.57 -21.93 16 16 C 0.50 14.38 7.90 87.66 0.69 15.07 16 17 O -0.58 -23.93 16.43 -3.03 -0.05 -23.98 16 18 C 0.09 1.77 6.72 85.63 0.58 2.34 16 19 N -0.27 -7.24 2.82 -338.77 -0.95 -8.20 16 20 N -0.13 -4.59 13.19 37.02 0.49 -4.10 16 21 N -0.30 -10.48 12.40 -49.00 -0.61 -11.09 16 22 C -0.04 -1.14 7.11 41.75 0.30 -0.85 16 23 C 0.00 -0.08 6.76 41.50 0.28 0.20 16 24 C -0.05 -0.68 5.97 29.94 0.18 -0.50 16 25 C -0.11 -1.01 5.90 30.77 0.18 -0.82 16 26 C -0.12 -1.43 5.90 30.77 0.18 -1.25 16 27 C -0.03 -0.57 6.30 29.96 0.19 -0.39 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 1.42 8.08 -2.38 -0.02 1.40 16 34 H 0.05 1.91 7.83 -2.38 -0.02 1.89 16 35 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 36 H 0.07 3.50 5.52 -2.39 -0.01 3.49 16 37 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 38 H 0.05 1.98 6.64 -2.39 -0.02 1.97 16 39 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.42 8.33 8.47 -92.70 -0.79 7.54 16 41 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.19 1.35 7.71 -2.39 -0.02 1.33 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.11 0.85 7.87 -2.39 -0.02 0.83 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 47 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.13 404.15 3.20 -76.93 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.15 Total: 15.11 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.18 Total: 9.61 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -5.11 Total: -123.86 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -80.13 3.20 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.616 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds