Wall clock time and date at job start Tue Mar 31 2020 18:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46901 * 2 1 4 4 H 1.08997 * 109.47280 * 304.99727 * 3 2 1 5 5 C 1.53003 * 109.47210 * 184.99634 * 3 2 1 6 6 N 1.46493 * 109.47380 * 185.00074 * 5 3 2 7 7 C 1.34777 * 120.00163 * 180.02562 * 6 5 3 8 8 O 1.21574 * 119.99808 * 359.97438 * 7 6 5 9 9 C 1.47711 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.41509 * 126.51491 * 180.29288 * 9 7 6 11 11 C 1.35366 * 105.50117 * 180.09713 * 10 9 7 12 12 C 1.50694 * 126.38357 * 179.89787 * 11 10 9 13 13 H 1.09004 * 110.36987 * 352.36098 * 12 11 10 14 14 C 1.54382 * 110.41203 * 114.71271 * 12 11 10 15 15 C 1.54257 * 105.06052 * 142.63050 * 14 12 11 16 16 C 1.54379 * 105.06256 * 0.02562 * 15 14 12 17 17 N 1.48562 * 104.69842 * 336.08765 * 16 15 14 18 18 C 1.46894 * 111.00344 * 159.09785 * 17 16 15 19 19 N 1.35037 * 107.22798 * 359.63278 * 11 10 9 20 20 H 0.97001 * 124.88304 * 180.25761 * 19 11 10 21 21 N 1.28471 * 110.23233 * 0.24409 * 19 11 10 22 22 N 1.46506 * 109.47056 * 65.00125 * 3 2 1 23 23 C 1.36940 * 119.99506 * 274.99957 * 22 3 2 24 24 H 1.07995 * 120.00238 * 359.97438 * 23 22 3 25 25 C 1.38813 * 119.99607 * 179.97438 * 23 22 3 26 26 N 1.31621 * 120.00196 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00006 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47259 * 89.99951 * 27 25 23 29 29 H 1.48504 * 109.47023 * 209.99418 * 27 25 23 30 30 H 1.48499 * 109.47404 * 329.99721 * 27 25 23 31 31 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47459 * 300.00254 * 1 2 3 33 33 H 1.09008 * 109.47315 * 59.99984 * 1 2 3 34 34 H 1.08997 * 109.47041 * 240.00397 * 2 1 3 35 35 H 1.08994 * 109.47160 * 119.99846 * 2 1 3 36 36 H 1.09000 * 109.46689 * 65.00327 * 5 3 2 37 37 H 1.09005 * 109.47018 * 305.00487 * 5 3 2 38 38 H 0.97009 * 120.00050 * 0.02562 * 6 5 3 39 39 H 1.07997 * 127.24838 * 359.97438 * 10 9 7 40 40 H 1.08997 * 110.32536 * 23.73672 * 14 12 11 41 41 H 1.09004 * 110.32474 * 261.52897 * 14 12 11 42 42 H 1.08998 * 110.32238 * 241.10511 * 15 14 12 43 43 H 1.09002 * 110.32308 * 118.90057 * 15 14 12 44 44 H 1.09002 * 110.41258 * 94.92615 * 16 15 14 45 45 H 1.09002 * 110.41328 * 217.24846 * 16 15 14 46 46 H 1.09007 * 109.47069 * 59.87301 * 18 17 16 47 47 H 1.08995 * 109.47381 * 179.87413 * 18 17 16 48 48 H 1.09000 * 109.47076 * 299.87817 * 18 17 16 49 49 H 0.96991 * 120.00187 * 94.99562 * 22 3 2 50 50 H 0.96996 * 120.00146 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4445 -0.1256 6 7 4.0630 2.8169 -0.0059 7 6 5.3856 3.0632 -0.0867 8 8 6.1652 2.1463 -0.2585 9 6 5.8879 4.4470 0.0347 10 6 7.2391 4.8614 -0.0346 11 6 7.2145 6.2047 0.1305 12 6 8.4067 7.1263 0.1390 13 1 9.3319 6.5500 0.1263 14 6 8.3538 8.0863 -1.0688 15 6 8.8896 9.4311 -0.5358 16 6 9.2218 9.1703 0.9491 17 7 8.3655 8.0176 1.3302 18 6 8.8963 7.3378 2.5192 19 7 5.9219 6.5656 0.2802 20 1 5.6116 7.4751 0.4124 21 7 5.1622 5.5312 0.2221 22 7 1.6524 2.0975 1.2519 23 6 0.4155 2.6735 1.3688 24 1 -0.2741 2.6452 0.5381 25 6 0.0480 3.2936 2.5551 26 7 -1.1406 3.8476 2.6674 27 14 1.2410 3.3430 3.9917 28 1 2.0760 4.5677 3.8998 29 1 0.4800 3.3575 5.2668 30 1 2.1154 2.1435 3.9506 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8499 1.0379 -1.0960 37 1 3.9954 0.8312 0.6660 38 1 3.4409 3.5484 0.1316 39 1 8.1074 4.2371 -0.1852 40 1 7.3275 8.1994 -1.4179 41 1 8.9898 7.7176 -1.8737 42 1 8.1261 10.2041 -0.6232 43 1 9.7885 9.7225 -1.0790 44 1 10.2754 8.9156 1.0639 45 1 8.9747 10.0435 1.5530 46 1 8.9327 8.0392 3.3529 47 1 8.2494 6.4996 2.7777 48 1 9.9009 6.9704 2.3096 49 1 2.2718 2.1232 1.9978 50 1 -1.3975 4.2806 3.4965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732199774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:10 Heat of formation + Delta-G solvation = 50.196213 kcal Electronic energy + Delta-G solvation = -29136.661137 eV Core-core repulsion = 25200.509920 eV Total energy + Delta-G solvation = -3936.151217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.74598 -39.39700 -39.00008 -36.76538 -33.74886 -32.69951 -32.35508 -31.99839 -31.78164 -30.20859 -28.43313 -27.82212 -26.03274 -24.50333 -23.03112 -22.39744 -21.76259 -21.46385 -21.05239 -20.17741 -19.45334 -17.91387 -17.63417 -16.66454 -16.42931 -15.79861 -15.64512 -15.32540 -15.19695 -14.84813 -14.27354 -14.26166 -14.07898 -13.76833 -13.63139 -13.45761 -13.13236 -12.84940 -12.80118 -12.72895 -12.39844 -12.23019 -11.94610 -11.87365 -11.59540 -11.49569 -11.13721 -11.10556 -10.92386 -10.82695 -10.69799 -10.33718 -10.24477 -9.99912 -9.83897 -9.44294 -9.38283 -9.15510 -9.03054 -8.92204 -8.65777 -7.28632 -5.76506 -3.11789 1.67978 1.99888 2.83598 3.38904 3.41144 3.44214 3.47943 3.57786 3.64145 4.10501 4.15455 4.45330 4.53522 4.60290 4.60575 4.76688 4.92275 5.00194 5.05773 5.18148 5.25381 5.27409 5.33491 5.40257 5.41720 5.50954 5.53294 5.55671 5.60311 5.64907 5.71586 5.84004 5.94392 5.96175 6.10736 6.25274 6.33044 6.34440 6.45691 6.52844 6.58667 6.63043 6.84109 6.96364 7.00215 7.33472 7.75779 7.99477 8.04052 8.41791 8.51371 9.20217 9.92964 10.12334 11.41274 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002819 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.595808 B = 9929.345022 C =11121.680622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.111 3.889 6 N -0.702 5.702 7 C 0.599 3.401 8 O -0.547 6.547 9 C -0.011 4.011 10 C -0.176 4.176 11 C 0.027 3.973 12 C 0.129 3.871 13 H 0.082 0.918 14 C -0.120 4.120 15 C -0.125 4.125 16 C 0.031 3.969 17 N -0.516 5.516 18 C 0.013 3.987 19 N -0.362 5.362 20 H 0.447 0.553 21 N -0.244 5.244 22 N -0.746 5.746 23 C -0.238 4.238 24 H 0.095 0.905 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.879 3.121 28 H -0.285 1.285 29 H -0.293 1.293 30 H -0.278 1.278 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.417 0.583 39 H 0.159 0.841 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.033 0.967 49 H 0.362 0.638 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.409 9.438 -6.807 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.354 5.354 7 C 0.383 3.617 8 O -0.423 6.423 9 C -0.172 4.172 10 C -0.204 4.204 11 C -0.099 4.099 12 C 0.020 3.980 13 H 0.099 0.901 14 C -0.158 4.158 15 C -0.163 4.163 16 C -0.096 4.096 17 N -0.240 5.240 18 C -0.135 4.135 19 N -0.076 5.076 20 H 0.292 0.708 21 N -0.081 5.081 22 N -0.390 5.390 23 C -0.368 4.368 24 H 0.113 0.887 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.204 1.204 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.254 0.746 39 H 0.177 0.823 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.195 0.805 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.058 9.328 -6.688 23.983 hybrid contribution 1.916 0.341 1.198 2.286 sum 22.974 9.669 -5.490 25.523 Atomic orbital electron populations 1.21782 0.95239 0.99658 1.03785 1.22036 0.97322 0.97841 1.00110 1.20553 0.89811 0.92986 0.90833 0.91880 1.21777 0.95617 0.82343 1.01596 1.45902 1.06859 1.11117 1.71500 1.16900 0.82543 0.85433 0.76851 1.90754 1.56442 1.44287 1.50846 1.21944 0.92228 0.93127 1.09894 1.21442 0.97336 0.92764 1.08901 1.20895 0.86835 0.94394 1.07824 1.21190 0.93332 0.92162 0.91355 0.90056 1.22388 1.02627 0.94241 0.96576 1.22326 1.01553 0.97573 0.94881 1.23137 0.95420 0.94680 0.96405 1.65321 1.48808 1.06937 1.02927 1.22528 0.98378 0.99646 0.92995 1.43222 1.03744 1.09410 1.51245 0.70789 1.73732 1.22718 0.93750 1.17856 1.42832 1.16927 1.67619 1.11592 1.19048 0.90727 1.27256 0.99778 0.88746 1.24629 0.96335 1.00351 0.97502 1.69691 1.19345 1.42258 1.26692 0.86644 0.81017 0.77890 0.83531 1.21123 1.21952 1.20387 0.94893 0.89356 0.93881 0.93521 0.92651 0.91208 0.91677 0.74599 0.82326 0.90800 0.90279 0.90639 0.90880 0.93391 0.89665 0.90931 0.90857 0.94851 0.80504 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.18 37.16 0.34 -2.36 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.17 3.09 2.59 -67.92 -0.18 2.92 16 4 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 5 C 0.11 1.87 5.23 -4.04 -0.02 1.85 16 6 N -0.70 -12.36 5.38 -61.29 -0.33 -12.69 16 7 C 0.60 10.69 7.83 -12.39 -0.10 10.59 16 8 O -0.55 -10.76 16.93 5.30 0.09 -10.67 16 9 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 10 C -0.18 -2.31 10.72 -39.36 -0.42 -2.73 16 11 C 0.03 0.30 5.81 -82.21 -0.48 -0.18 16 12 C 0.13 1.01 2.76 -67.07 -0.19 0.83 16 13 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 14 C -0.12 -0.75 6.54 -25.35 -0.17 -0.91 16 15 C -0.13 -0.63 7.00 -25.35 -0.18 -0.81 16 16 C 0.03 0.18 6.48 -2.18 -0.01 0.16 16 17 N -0.52 -3.98 5.34 -231.49 -1.24 -5.22 16 18 C 0.01 0.10 9.43 60.06 0.57 0.67 16 19 N -0.36 -4.28 6.83 33.50 0.23 -4.06 16 20 H 0.45 4.26 8.96 -190.44 -1.71 2.55 16 21 N -0.24 -3.74 11.92 33.42 0.40 -3.35 16 22 N -0.75 -16.67 4.31 -53.42 -0.23 -16.90 16 23 C -0.24 -6.30 8.23 -15.06 -0.12 -6.43 16 24 H 0.09 2.67 7.55 -52.49 -0.40 2.27 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 27 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 28 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.94 5.99 -51.93 -0.31 1.63 16 33 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.42 7.68 7.86 -40.82 -0.32 7.36 16 39 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.05 0.25 7.97 -51.93 -0.41 -0.17 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 48 H 0.03 0.22 7.98 -51.93 -0.41 -0.19 16 49 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 50 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -32.39 403.01 -10.43 -42.82 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -9.69 Total: 13.81 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.79 Total: 0.55 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.39 Total: -69.99 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.39 -10.43 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732199774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.011 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds