Wall clock time and date at job start Tue Mar 31 2020 18:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46901 * 2 1 4 4 H 1.08997 * 109.47280 * 304.99727 * 3 2 1 5 5 C 1.53003 * 109.47210 * 184.99634 * 3 2 1 6 6 N 1.46493 * 109.47380 * 185.00074 * 5 3 2 7 7 C 1.34777 * 120.00163 * 180.02562 * 6 5 3 8 8 O 1.21574 * 119.99808 * 359.97438 * 7 6 5 9 9 C 1.47711 * 119.99809 * 180.02562 * 7 6 5 10 10 C 1.41509 * 126.51491 * 180.29288 * 9 7 6 11 11 C 1.35366 * 105.50117 * 180.09713 * 10 9 7 12 12 C 1.50694 * 126.38357 * 179.89787 * 11 10 9 13 13 H 1.09004 * 110.36987 * 352.36098 * 12 11 10 14 14 C 1.54382 * 110.41203 * 114.71271 * 12 11 10 15 15 C 1.54257 * 105.06052 * 142.63050 * 14 12 11 16 16 C 1.54379 * 105.06256 * 0.02562 * 15 14 12 17 17 N 1.48562 * 104.69842 * 336.08765 * 16 15 14 18 18 C 1.46894 * 111.00344 * 159.09785 * 17 16 15 19 19 N 1.35037 * 107.22798 * 359.63278 * 11 10 9 20 20 H 0.97001 * 124.88304 * 180.25761 * 19 11 10 21 21 N 1.28471 * 110.23233 * 0.24409 * 19 11 10 22 22 N 1.46506 * 109.47056 * 65.00125 * 3 2 1 23 23 C 1.36940 * 119.99506 * 274.99957 * 22 3 2 24 24 H 1.07995 * 120.00238 * 359.97438 * 23 22 3 25 25 C 1.38813 * 119.99607 * 179.97438 * 23 22 3 26 26 N 1.31621 * 120.00196 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00006 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47259 * 89.99951 * 27 25 23 29 29 H 1.48504 * 109.47023 * 209.99418 * 27 25 23 30 30 H 1.48499 * 109.47404 * 329.99721 * 27 25 23 31 31 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47459 * 300.00254 * 1 2 3 33 33 H 1.09008 * 109.47315 * 59.99984 * 1 2 3 34 34 H 1.08997 * 109.47041 * 240.00397 * 2 1 3 35 35 H 1.08994 * 109.47160 * 119.99846 * 2 1 3 36 36 H 1.09000 * 109.46689 * 65.00327 * 5 3 2 37 37 H 1.09005 * 109.47018 * 305.00487 * 5 3 2 38 38 H 0.97009 * 120.00050 * 0.02562 * 6 5 3 39 39 H 1.07997 * 127.24838 * 359.97438 * 10 9 7 40 40 H 1.08997 * 110.32536 * 23.73672 * 14 12 11 41 41 H 1.09004 * 110.32474 * 261.52897 * 14 12 11 42 42 H 1.08998 * 110.32238 * 241.10511 * 15 14 12 43 43 H 1.09002 * 110.32308 * 118.90057 * 15 14 12 44 44 H 1.09002 * 110.41258 * 94.92615 * 16 15 14 45 45 H 1.09002 * 110.41328 * 217.24846 * 16 15 14 46 46 H 1.09007 * 109.47069 * 59.87301 * 18 17 16 47 47 H 1.08995 * 109.47381 * 179.87413 * 18 17 16 48 48 H 1.09000 * 109.47076 * 299.87817 * 18 17 16 49 49 H 0.96991 * 120.00187 * 94.99562 * 22 3 2 50 50 H 0.96996 * 120.00146 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4445 -0.1256 6 7 4.0630 2.8169 -0.0059 7 6 5.3856 3.0632 -0.0867 8 8 6.1652 2.1463 -0.2585 9 6 5.8879 4.4470 0.0347 10 6 7.2391 4.8614 -0.0346 11 6 7.2145 6.2047 0.1305 12 6 8.4067 7.1263 0.1390 13 1 9.3319 6.5500 0.1263 14 6 8.3538 8.0863 -1.0688 15 6 8.8896 9.4311 -0.5358 16 6 9.2218 9.1703 0.9491 17 7 8.3655 8.0176 1.3302 18 6 8.8963 7.3378 2.5192 19 7 5.9219 6.5656 0.2802 20 1 5.6116 7.4751 0.4124 21 7 5.1622 5.5312 0.2221 22 7 1.6524 2.0975 1.2519 23 6 0.4155 2.6735 1.3688 24 1 -0.2741 2.6452 0.5381 25 6 0.0480 3.2936 2.5551 26 7 -1.1406 3.8476 2.6674 27 14 1.2410 3.3430 3.9917 28 1 2.0760 4.5677 3.8998 29 1 0.4800 3.3575 5.2668 30 1 2.1154 2.1435 3.9506 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8499 1.0379 -1.0960 37 1 3.9954 0.8312 0.6660 38 1 3.4409 3.5484 0.1316 39 1 8.1074 4.2371 -0.1852 40 1 7.3275 8.1994 -1.4179 41 1 8.9898 7.7176 -1.8737 42 1 8.1261 10.2041 -0.6232 43 1 9.7885 9.7225 -1.0790 44 1 10.2754 8.9156 1.0639 45 1 8.9747 10.0435 1.5530 46 1 8.9327 8.0392 3.3529 47 1 8.2494 6.4996 2.7777 48 1 9.9009 6.9704 2.3096 49 1 2.2718 2.1232 1.9978 50 1 -1.3975 4.2806 3.4965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732199774.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:09 Heat of formation + Delta-G solvation = 25.578272 kcal Electronic energy + Delta-G solvation = -29137.728651 eV Core-core repulsion = 25200.509920 eV Total energy + Delta-G solvation = -3937.218731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.77134 -40.55489 -39.80420 -38.37439 -35.31277 -34.19082 -33.25472 -32.89143 -32.80737 -32.06842 -29.75525 -28.72656 -26.58490 -25.97827 -24.75232 -23.59154 -22.79733 -22.08386 -21.79428 -21.72465 -20.81248 -19.55930 -18.75501 -17.93589 -17.16991 -17.08462 -16.80062 -16.72954 -16.11109 -15.99525 -15.63036 -15.41729 -15.17110 -14.76631 -14.71256 -14.63399 -14.55536 -14.39315 -14.13189 -14.02534 -13.33140 -13.09459 -12.90596 -12.86246 -12.77276 -12.57089 -12.41274 -12.39325 -12.09836 -12.08749 -11.96634 -11.87677 -11.62217 -11.45842 -11.42623 -11.27054 -10.92798 -10.51205 -10.06225 -10.03130 -9.63570 -9.28813 -7.95965 -5.26939 0.50223 1.02551 1.37699 1.39439 1.44542 1.85051 2.25544 2.34544 2.50620 2.89295 3.35069 3.38193 3.53009 3.60081 3.63859 3.88054 3.92222 4.06038 4.13364 4.29752 4.34141 4.39792 4.45572 4.46851 4.50147 4.57167 4.58881 4.68474 4.75677 4.78994 4.83124 4.92575 4.96774 5.05129 5.07986 5.12995 5.13180 5.20582 5.23813 5.27219 5.42683 5.54171 5.74410 5.74738 5.87106 5.89773 6.06289 6.27102 6.45431 6.86346 7.12263 7.14100 7.88088 8.06151 9.25308 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002819 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.595808 B = 9929.345022 C =11121.680622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.167 3.833 4 H 0.059 0.941 5 C 0.118 3.882 6 N -0.705 5.705 7 C 0.598 3.402 8 O -0.569 6.569 9 C -0.036 4.036 10 C -0.189 4.189 11 C 0.051 3.949 12 C 0.129 3.871 13 H 0.093 0.907 14 C -0.118 4.118 15 C -0.120 4.120 16 C 0.032 3.968 17 N -0.529 5.529 18 C 0.014 3.986 19 N -0.352 5.352 20 H 0.456 0.544 21 N -0.271 5.271 22 N -0.747 5.747 23 C -0.201 4.201 24 H 0.071 0.929 25 C -0.058 4.058 26 N -0.982 5.982 27 Si 0.938 3.062 28 H -0.287 1.287 29 H -0.302 1.302 30 H -0.261 1.261 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.169 0.831 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.051 0.949 48 H 0.044 0.956 49 H 0.361 0.639 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.256 9.643 -7.575 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.059 3.941 4 H 0.077 0.923 5 C -0.006 4.006 6 N -0.355 5.355 7 C 0.384 3.616 8 O -0.448 6.448 9 C -0.196 4.196 10 C -0.218 4.218 11 C -0.077 4.077 12 C 0.020 3.980 13 H 0.111 0.889 14 C -0.157 4.157 15 C -0.158 4.158 16 C -0.095 4.095 17 N -0.254 5.254 18 C -0.134 4.134 19 N -0.067 5.067 20 H 0.303 0.697 21 N -0.109 5.109 22 N -0.390 5.390 23 C -0.332 4.332 24 H 0.089 0.911 25 C -0.249 4.249 26 N -0.634 5.634 27 Si 0.768 3.232 28 H -0.214 1.214 29 H -0.229 1.229 30 H -0.186 1.186 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.186 0.814 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.194 0.806 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.943 9.505 -7.486 26.826 hybrid contribution 1.059 0.294 1.319 1.717 sum 25.002 9.799 -6.167 27.552 Atomic orbital electron populations 1.21695 0.96315 1.00498 1.01591 1.21951 0.96163 0.96668 1.01887 1.20726 0.91091 0.93592 0.88686 0.92298 1.21741 0.93948 0.82222 1.02677 1.45942 1.06895 1.11167 1.71519 1.17136 0.82246 0.86107 0.76146 1.90725 1.56807 1.45189 1.52042 1.21851 0.93517 0.92499 1.11696 1.21633 0.96597 0.93826 1.09695 1.21300 0.87162 0.94185 1.05039 1.21315 0.92081 0.92253 0.92394 0.88935 1.22400 1.02594 0.94543 0.96129 1.22321 1.02265 0.96755 0.94433 1.23196 0.95611 0.93863 0.96872 1.65288 1.49890 1.07407 1.02766 1.22494 0.98411 0.99156 0.93364 1.43267 1.04050 1.09268 1.50127 0.69661 1.73658 1.23767 0.94386 1.19070 1.42837 1.15388 1.67702 1.13095 1.18971 0.91273 1.24662 0.98295 0.91143 1.25232 0.97830 1.01664 1.00213 1.69840 1.21546 1.44797 1.27175 0.85663 0.79077 0.78205 0.80262 1.21407 1.22927 1.18617 0.92612 0.93584 0.93915 0.89967 0.92565 0.89199 0.91702 0.75168 0.81369 0.91615 0.89073 0.90545 0.89244 0.92390 0.89266 0.90237 0.93021 0.93726 0.80585 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.18 71.98 0.66 -4.43 16 2 C -0.13 -4.01 5.61 30.60 0.17 -3.84 16 3 C 0.17 5.93 2.59 44.99 0.12 6.04 16 4 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 5 C 0.12 3.78 5.23 86.38 0.45 4.23 16 6 N -0.70 -24.33 5.38 -466.10 -2.51 -26.84 16 7 C 0.60 21.11 7.83 86.75 0.68 21.78 16 8 O -0.57 -22.02 16.93 -3.95 -0.07 -22.09 16 9 C -0.04 -1.15 7.13 42.46 0.30 -0.85 16 10 C -0.19 -4.80 10.72 22.41 0.24 -4.56 16 11 C 0.05 1.03 5.81 41.40 0.24 1.27 16 12 C 0.13 1.74 2.76 44.26 0.12 1.87 16 13 H 0.09 1.09 7.91 -2.39 -0.02 1.07 16 14 C -0.12 -1.18 6.54 31.49 0.21 -0.97 16 15 C -0.12 -0.86 7.00 31.49 0.22 -0.63 16 16 C 0.03 0.28 6.48 86.45 0.56 0.84 16 17 N -0.53 -7.07 5.34 -886.31 -4.73 -11.80 16 18 C 0.01 0.19 9.43 127.69 1.20 1.40 16 19 N -0.35 -8.05 6.83 -47.93 -0.33 -8.38 16 20 H 0.46 8.29 8.96 -219.99 -1.97 6.31 16 21 N -0.27 -8.27 11.92 -48.17 -0.57 -8.85 16 22 N -0.75 -32.96 4.31 -322.92 -1.39 -34.35 16 23 C -0.20 -10.76 8.23 84.03 0.69 -10.07 16 24 H 0.07 4.09 7.55 -2.91 -0.02 4.07 16 25 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 26 N -0.98 -62.05 13.97 21.65 0.30 -61.74 16 27 Si 0.94 46.44 27.74 68.60 1.90 48.34 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 30 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 33 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.41 15.12 7.86 -92.70 -0.73 14.39 16 39 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.07 0.78 7.85 -2.39 -0.02 0.76 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 0.41 7.97 -2.39 -0.02 0.39 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.05 0.92 8.06 -2.39 -0.02 0.90 16 48 H 0.04 0.50 7.98 -2.39 -0.02 0.48 16 49 H 0.36 16.19 5.66 -92.72 -0.52 15.66 16 50 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.03 403.01 -3.38 -74.41 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -2.32 Total: 42.10 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.33 Total: 9.19 kcal Atomic # 7 Polarization: -142.72 SS G_CDS: -9.23 Total: -151.95 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.07 Total: -22.09 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Total: -71.03 -3.38 -74.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732199774.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.987 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds