Wall clock time and date at job start Tue Mar 31 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00117 * 2 1 4 4 O 1.21593 * 120.00051 * 183.28437 * 3 2 1 5 5 C 1.47523 * 119.99899 * 3.01113 * 3 2 1 6 6 C 1.36600 * 125.77315 * 173.75375 * 5 3 2 7 7 N 1.34811 * 106.84244 * 179.84280 * 6 5 3 8 8 C 1.46493 * 126.59721 * 180.15576 * 7 6 5 9 9 C 1.53000 * 109.47436 * 75.32992 * 8 7 6 10 10 C 1.53005 * 109.47096 * 195.33207 * 8 7 6 11 11 C 1.52998 * 109.46915 * 315.32979 * 8 7 6 12 12 N 1.40214 * 106.80948 * 0.41120 * 7 6 5 13 13 N 1.28760 * 108.36721 * 359.73929 * 12 7 6 14 14 C 1.46500 * 120.00172 * 180.02562 * 2 1 3 15 15 H 1.09000 * 109.47275 * 180.02562 * 14 2 1 16 16 C 1.52998 * 109.46817 * 300.00065 * 14 2 1 17 17 N 1.46504 * 109.47396 * 304.99696 * 16 14 2 18 18 C 1.36930 * 120.00312 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00235 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47268 * 90.00268 * 22 20 18 24 24 H 1.48496 * 109.47398 * 210.00180 * 22 20 18 25 25 H 1.48507 * 109.47440 * 330.00090 * 22 20 18 26 26 C 1.52998 * 109.46783 * 59.99792 * 14 2 1 27 27 C 1.53005 * 117.49787 * 128.75291 * 26 14 2 28 28 C 1.52991 * 117.50223 * 60.09235 * 26 14 2 29 29 H 1.09000 * 109.47197 * 84.17938 * 1 2 3 30 30 H 1.08998 * 109.47150 * 204.18131 * 1 2 3 31 31 H 1.09001 * 109.47383 * 324.18219 * 1 2 3 32 32 H 1.07994 * 126.57499 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46636 * 60.00306 * 9 8 7 34 34 H 1.08997 * 109.47093 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46949 * 300.00515 * 9 8 7 36 36 H 1.08997 * 109.46898 * 60.00326 * 10 8 7 37 37 H 1.09006 * 109.46829 * 179.97438 * 10 8 7 38 38 H 1.08990 * 109.47305 * 299.99470 * 10 8 7 39 39 H 1.09000 * 109.47343 * 60.00361 * 11 8 7 40 40 H 1.09006 * 109.47402 * 179.97438 * 11 8 7 41 41 H 1.08999 * 109.47496 * 300.00560 * 11 8 7 42 42 H 1.08996 * 109.47302 * 65.00073 * 16 14 2 43 43 H 1.08998 * 109.47331 * 185.00025 * 16 14 2 44 44 H 0.97004 * 119.99330 * 0.02562 * 17 16 14 45 45 H 0.97001 * 119.99680 * 179.97438 * 21 20 18 46 46 H 1.09003 * 115.55017 * 274.41872 * 26 14 2 47 47 H 1.09004 * 117.49437 * 359.97438 * 27 26 14 48 48 H 1.08998 * 117.49758 * 145.01597 * 27 26 14 49 49 H 1.09001 * 117.50127 * 214.97907 * 28 26 14 50 50 H 1.09010 * 117.49914 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3533 1.1680 -0.0603 5 6 1.4028 2.4439 0.0671 6 6 1.9633 3.6830 0.1949 7 7 0.9488 4.5706 0.2133 8 6 1.0638 6.0262 0.3322 9 6 1.5369 6.6109 -1.0002 10 6 -0.3002 6.6178 0.6932 11 6 2.0750 6.3700 1.4277 12 7 -0.2380 3.8322 0.1028 13 7 0.0670 2.5841 0.0187 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0695 0.0000 16 6 1.8279 -2.0715 1.2483 17 7 2.0707 -1.2574 2.4419 18 6 1.8113 -1.7700 3.6848 19 1 1.4273 -2.7745 3.7853 20 6 2.0418 -0.9988 4.8157 21 7 2.5093 0.2255 4.6932 22 14 1.6873 -1.6979 6.5112 23 1 2.9016 -2.3769 7.0306 24 1 1.3046 -0.5965 7.4308 25 1 0.5737 -2.6763 6.4204 26 6 1.8278 -2.0704 -1.2502 27 6 2.9740 -2.6050 -2.1112 28 6 2.1227 -1.4348 -2.6102 29 1 -0.3633 0.1042 -1.0224 30 1 -0.3633 -0.9375 0.4209 31 1 -0.3634 0.8333 0.6014 32 1 3.0171 3.9086 0.2646 33 1 0.8165 6.3660 -1.7806 34 1 1.6221 7.6940 -0.9118 35 1 2.5086 6.1894 -1.2574 36 1 -0.6371 6.2013 1.6424 37 1 -0.2145 7.7009 0.7820 38 1 -1.0205 6.3729 -0.0873 39 1 3.0467 5.9486 1.1706 40 1 2.1610 7.4531 1.5159 41 1 1.7380 5.9534 2.3769 42 1 0.7742 -2.3469 1.2045 43 1 2.4376 -2.9738 1.2939 44 1 2.4152 -0.3551 2.3515 45 1 2.6701 0.7646 5.4834 46 1 0.9322 -2.6860 -1.1659 47 1 3.9914 -2.3851 -1.7876 48 1 2.8323 -3.5721 -2.5937 49 1 1.4213 -1.6324 -3.4208 50 1 2.5797 -0.4452 -2.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734294968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:55 Heat of formation + Delta-G solvation = 111.575093 kcal Electronic energy + Delta-G solvation = -30373.445243 eV Core-core repulsion = 26439.955613 eV Total energy + Delta-G solvation = -3933.489629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12684 -39.54464 -37.59298 -37.12999 -35.05936 -33.88003 -31.96398 -31.33963 -30.44475 -28.23451 -27.86380 -27.73596 -26.29577 -24.27044 -23.67499 -22.95487 -22.16004 -21.35388 -20.61360 -19.94669 -18.78959 -17.18970 -17.08445 -16.32450 -16.04303 -15.86791 -15.20765 -14.79939 -14.61025 -14.55109 -14.42717 -14.11516 -13.81843 -13.46584 -13.07426 -12.91910 -12.88042 -12.78474 -12.63757 -12.41277 -12.26998 -12.14700 -11.95933 -11.87381 -11.71974 -11.43585 -11.35982 -11.29406 -10.87150 -10.80746 -10.66353 -10.50391 -10.20313 -10.16533 -10.14418 -9.89319 -9.60574 -9.46151 -9.05444 -8.79876 -8.06822 -6.82109 -5.66868 -2.95288 1.32955 2.02437 2.04658 3.30379 3.48291 3.52848 3.54596 3.71402 4.01800 4.15512 4.29949 4.39203 4.42678 4.61935 4.79146 4.88395 5.01581 5.06715 5.13625 5.16251 5.21095 5.24494 5.25001 5.30561 5.38851 5.49081 5.53478 5.60681 5.64209 5.71457 5.77788 5.79453 5.83504 5.89943 5.97063 6.01255 6.08702 6.15817 6.30020 6.32474 6.47030 6.51721 6.62036 6.64265 6.82913 7.13436 7.76749 7.84703 8.15832 8.50748 8.62458 9.62326 10.21607 10.57094 11.55533 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004370 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.415027 B = 6405.217952 C = 8894.247980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.575 5.575 3 C 0.606 3.394 4 O -0.546 6.546 5 C -0.085 4.085 6 C 0.093 3.907 7 N -0.353 5.353 8 C 0.171 3.829 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.165 4.165 12 N -0.074 5.074 13 N -0.201 5.201 14 C 0.162 3.838 15 H 0.101 0.899 16 C 0.147 3.853 17 N -0.727 5.727 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.282 1.282 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.171 4.171 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.198 0.802 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.022 0.978 43 H 0.031 0.969 44 H 0.386 0.614 45 H 0.253 0.747 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 11.942 -15.145 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.305 5.305 3 C 0.392 3.608 4 O -0.423 6.423 5 C -0.224 4.224 6 C -0.064 4.064 7 N -0.139 5.139 8 C 0.088 3.912 9 C -0.218 4.218 10 C -0.206 4.206 11 C -0.223 4.223 12 N -0.053 5.053 13 N -0.074 5.074 14 C 0.059 3.941 15 H 0.119 0.881 16 C 0.019 3.981 17 N -0.372 5.372 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.209 4.209 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.215 0.785 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.220 0.780 45 H 0.062 0.938 46 H 0.125 0.875 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.846 11.947 -15.092 19.629 hybrid contribution 0.908 -0.040 1.173 1.484 sum -2.938 11.907 -13.919 18.551 Atomic orbital electron populations 1.22020 0.78700 1.04134 1.01257 1.47376 1.07506 1.04693 1.70891 1.16741 0.85940 0.81865 0.76286 1.90769 1.12742 1.86768 1.52014 1.21413 0.89928 0.94995 1.16104 1.23167 0.96398 0.88776 0.98022 1.50711 1.05846 1.08033 1.49322 1.21030 0.98947 0.73725 0.97504 1.22272 1.02366 1.01948 0.95184 1.21983 0.94040 1.00899 1.03643 1.22314 0.98476 1.03411 0.98099 1.81901 1.04418 0.96568 1.22399 1.74754 1.12685 1.09418 1.10569 1.20967 0.97764 0.82214 0.93163 0.88085 1.20955 0.97763 0.93530 0.85886 1.42281 1.78781 1.15768 1.00322 1.19210 1.35915 0.97951 0.83675 0.91261 1.24722 1.02256 0.96298 0.97667 1.69698 1.51333 1.08734 1.28119 0.86215 0.77788 0.77627 0.84718 1.21801 1.21942 1.20812 1.22577 1.00419 1.02936 0.91679 1.22971 0.96343 0.97984 1.03575 1.22813 1.03363 0.97849 0.96833 0.93389 0.91283 0.88812 0.78505 0.91354 0.89833 0.91396 0.91095 0.90356 0.90734 0.91070 0.89616 0.90820 0.95989 0.95156 0.78010 0.93755 0.87545 0.88610 0.88896 0.89223 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 8.92 59.85 0.53 1.92 16 2 N -0.57 -10.63 2.12 -175.17 -0.37 -11.00 16 3 C 0.61 11.95 7.37 -12.48 -0.09 11.85 16 4 O -0.55 -11.87 16.20 5.28 0.09 -11.78 16 5 C -0.09 -1.51 6.70 -83.55 -0.56 -2.07 16 6 C 0.09 1.35 10.44 -16.83 -0.18 1.18 16 7 N -0.35 -4.56 3.44 -48.36 -0.17 -4.73 16 8 C 0.17 1.50 1.25 -131.82 -0.16 1.33 16 9 C -0.16 -1.06 8.74 37.16 0.32 -0.74 16 10 C -0.15 -1.18 8.11 37.16 0.30 -0.88 16 11 C -0.16 -1.27 8.30 37.16 0.31 -0.96 16 12 N -0.07 -1.15 12.91 60.35 0.78 -0.38 16 13 N -0.20 -3.47 8.80 32.85 0.29 -3.19 16 14 C 0.16 2.96 2.37 -67.93 -0.16 2.80 16 15 H 0.10 2.06 6.66 -51.93 -0.35 1.72 16 16 C 0.15 3.11 5.50 -4.04 -0.02 3.09 16 17 N -0.73 -19.40 5.43 -59.91 -0.33 -19.73 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 22 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.16 -2.25 4.83 -90.62 -0.44 -2.69 16 27 C -0.17 -2.16 10.18 -26.69 -0.27 -2.43 16 28 C -0.17 -2.23 10.13 -26.70 -0.27 -2.50 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 31 H 0.09 1.73 5.30 -51.93 -0.28 1.46 16 32 H 0.20 2.39 7.62 -52.49 -0.40 1.99 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 39 H 0.07 0.53 7.43 -51.93 -0.39 0.15 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.46 6.86 -51.93 -0.36 0.10 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.39 11.16 7.06 -40.82 -0.29 10.87 16 45 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.11 1.43 8.11 -51.93 -0.42 1.00 16 47 H 0.10 1.26 8.05 -51.93 -0.42 0.85 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 406.74 15.07 6.13 6.13 Total: -1.00 -35.09 406.74 -7.08 -42.17 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.27 Total: 10.52 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.93 Total: 2.40 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: 0.93 Total: -67.52 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.09 -7.08 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734294968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.744 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds