Wall clock time and date at job start Tue Mar 31 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00117 * 2 1 4 4 O 1.21593 * 120.00051 * 183.28437 * 3 2 1 5 5 C 1.47523 * 119.99899 * 3.01113 * 3 2 1 6 6 C 1.36600 * 125.77315 * 173.75375 * 5 3 2 7 7 N 1.34811 * 106.84244 * 179.84280 * 6 5 3 8 8 C 1.46493 * 126.59721 * 180.15576 * 7 6 5 9 9 C 1.53000 * 109.47436 * 75.32992 * 8 7 6 10 10 C 1.53005 * 109.47096 * 195.33207 * 8 7 6 11 11 C 1.52998 * 109.46915 * 315.32979 * 8 7 6 12 12 N 1.40214 * 106.80948 * 0.41120 * 7 6 5 13 13 N 1.28760 * 108.36721 * 359.73929 * 12 7 6 14 14 C 1.46500 * 120.00172 * 180.02562 * 2 1 3 15 15 H 1.09000 * 109.47275 * 180.02562 * 14 2 1 16 16 C 1.52998 * 109.46817 * 300.00065 * 14 2 1 17 17 N 1.46504 * 109.47396 * 304.99696 * 16 14 2 18 18 C 1.36930 * 120.00312 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00235 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99520 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47268 * 90.00268 * 22 20 18 24 24 H 1.48496 * 109.47398 * 210.00180 * 22 20 18 25 25 H 1.48507 * 109.47440 * 330.00090 * 22 20 18 26 26 C 1.52998 * 109.46783 * 59.99792 * 14 2 1 27 27 C 1.53005 * 117.49787 * 128.75291 * 26 14 2 28 28 C 1.52991 * 117.50223 * 60.09235 * 26 14 2 29 29 H 1.09000 * 109.47197 * 84.17938 * 1 2 3 30 30 H 1.08998 * 109.47150 * 204.18131 * 1 2 3 31 31 H 1.09001 * 109.47383 * 324.18219 * 1 2 3 32 32 H 1.07994 * 126.57499 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46636 * 60.00306 * 9 8 7 34 34 H 1.08997 * 109.47093 * 179.97438 * 9 8 7 35 35 H 1.08994 * 109.46949 * 300.00515 * 9 8 7 36 36 H 1.08997 * 109.46898 * 60.00326 * 10 8 7 37 37 H 1.09006 * 109.46829 * 179.97438 * 10 8 7 38 38 H 1.08990 * 109.47305 * 299.99470 * 10 8 7 39 39 H 1.09000 * 109.47343 * 60.00361 * 11 8 7 40 40 H 1.09006 * 109.47402 * 179.97438 * 11 8 7 41 41 H 1.08999 * 109.47496 * 300.00560 * 11 8 7 42 42 H 1.08996 * 109.47302 * 65.00073 * 16 14 2 43 43 H 1.08998 * 109.47331 * 185.00025 * 16 14 2 44 44 H 0.97004 * 119.99330 * 0.02562 * 17 16 14 45 45 H 0.97001 * 119.99680 * 179.97438 * 21 20 18 46 46 H 1.09003 * 115.55017 * 274.41872 * 26 14 2 47 47 H 1.09004 * 117.49437 * 359.97438 * 27 26 14 48 48 H 1.08998 * 117.49758 * 145.01597 * 27 26 14 49 49 H 1.09001 * 117.50127 * 214.97907 * 28 26 14 50 50 H 1.09010 * 117.49914 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3533 1.1680 -0.0603 5 6 1.4028 2.4439 0.0671 6 6 1.9633 3.6830 0.1949 7 7 0.9488 4.5706 0.2133 8 6 1.0638 6.0262 0.3322 9 6 1.5369 6.6109 -1.0002 10 6 -0.3002 6.6178 0.6932 11 6 2.0750 6.3700 1.4277 12 7 -0.2380 3.8322 0.1028 13 7 0.0670 2.5841 0.0187 14 6 2.1975 -1.2687 -0.0006 15 1 3.2692 -1.0695 0.0000 16 6 1.8279 -2.0715 1.2483 17 7 2.0707 -1.2574 2.4419 18 6 1.8113 -1.7700 3.6848 19 1 1.4273 -2.7745 3.7853 20 6 2.0418 -0.9988 4.8157 21 7 2.5093 0.2255 4.6932 22 14 1.6873 -1.6979 6.5112 23 1 2.9016 -2.3769 7.0306 24 1 1.3046 -0.5965 7.4308 25 1 0.5737 -2.6763 6.4204 26 6 1.8278 -2.0704 -1.2502 27 6 2.9740 -2.6050 -2.1112 28 6 2.1227 -1.4348 -2.6102 29 1 -0.3633 0.1042 -1.0224 30 1 -0.3633 -0.9375 0.4209 31 1 -0.3634 0.8333 0.6014 32 1 3.0171 3.9086 0.2646 33 1 0.8165 6.3660 -1.7806 34 1 1.6221 7.6940 -0.9118 35 1 2.5086 6.1894 -1.2574 36 1 -0.6371 6.2013 1.6424 37 1 -0.2145 7.7009 0.7820 38 1 -1.0205 6.3729 -0.0873 39 1 3.0467 5.9486 1.1706 40 1 2.1610 7.4531 1.5159 41 1 1.7380 5.9534 2.3769 42 1 0.7742 -2.3469 1.2045 43 1 2.4376 -2.9738 1.2939 44 1 2.4152 -0.3551 2.3515 45 1 2.6701 0.7646 5.4834 46 1 0.9322 -2.6860 -1.1659 47 1 3.9914 -2.3851 -1.7876 48 1 2.8323 -3.5721 -2.5937 49 1 1.4213 -1.6324 -3.4208 50 1 2.5797 -0.4452 -2.6148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734294968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:54 Heat of formation + Delta-G solvation = 89.090097 kcal Electronic energy + Delta-G solvation = -30374.420265 eV Core-core repulsion = 26439.955613 eV Total energy + Delta-G solvation = -3934.464652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31382 -40.97772 -38.65977 -38.24813 -36.63261 -35.66954 -33.36073 -32.93693 -31.84926 -29.87953 -28.48284 -28.41955 -27.74144 -26.12198 -24.87781 -24.36679 -23.21452 -22.95959 -21.77079 -21.10981 -20.15009 -19.17826 -18.21883 -17.72567 -17.26930 -17.09226 -16.70808 -16.45044 -15.81906 -15.75940 -15.47771 -15.22748 -15.09326 -14.94356 -14.85599 -14.49839 -13.94396 -13.72772 -13.58504 -13.48633 -13.37255 -13.18732 -13.16203 -13.07168 -12.79743 -12.79533 -12.65333 -12.45906 -12.38299 -12.18951 -12.10524 -12.06414 -11.83288 -11.75910 -11.39683 -11.22191 -11.13333 -10.97129 -10.83448 -10.32645 -9.52974 -8.99708 -7.93318 -5.22925 0.16203 0.67353 1.05756 1.44530 1.47334 1.55377 1.92308 2.28465 2.55022 3.00882 3.17675 3.24242 3.39637 3.51232 3.64277 3.69730 3.76098 3.95626 3.97673 4.11093 4.16222 4.19298 4.28177 4.43765 4.45255 4.51926 4.55052 4.58983 4.60697 4.65915 4.71784 4.77949 4.78858 4.80006 4.82405 4.93644 5.04496 5.05138 5.09266 5.17963 5.19675 5.28396 5.29809 5.32323 5.47718 5.55958 5.66336 6.26215 6.38159 6.88759 7.15745 7.32768 8.08321 8.32509 9.30095 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004370 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.415027 B = 6405.217952 C = 8894.247980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.575 5.575 3 C 0.597 3.403 4 O -0.578 6.578 5 C -0.117 4.117 6 C 0.100 3.900 7 N -0.337 5.337 8 C 0.157 3.843 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.163 4.163 12 N -0.086 5.086 13 N -0.216 5.216 14 C 0.170 3.830 15 H 0.073 0.927 16 C 0.146 3.854 17 N -0.741 5.741 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.267 1.267 26 C -0.166 4.166 27 C -0.159 4.159 28 C -0.162 4.162 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.124 0.876 47 H 0.084 0.916 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 12.244 -16.109 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.304 5.304 3 C 0.384 3.616 4 O -0.458 6.458 5 C -0.256 4.256 6 C -0.058 4.058 7 N -0.123 5.123 8 C 0.077 3.923 9 C -0.212 4.212 10 C -0.203 4.203 11 C -0.221 4.221 12 N -0.065 5.065 13 N -0.089 5.089 14 C 0.067 3.933 15 H 0.092 0.908 16 C 0.019 3.981 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.224 1.224 25 H -0.192 1.192 26 C -0.185 4.185 27 C -0.197 4.197 28 C -0.199 4.199 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.235 0.765 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.142 0.858 47 H 0.103 0.897 48 H 0.140 0.860 49 H 0.133 0.867 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.536 12.219 -16.087 20.704 hybrid contribution 1.115 -0.056 1.441 1.823 sum -3.421 12.163 -14.645 19.343 Atomic orbital electron populations 1.22005 0.77719 1.03361 1.02331 1.47480 1.08095 1.04564 1.70266 1.17096 0.85816 0.82845 0.75823 1.90726 1.14005 1.87365 1.53754 1.21382 0.90454 0.95187 1.18570 1.23456 0.97501 0.88182 0.96686 1.51114 1.04551 1.09441 1.47211 1.21613 1.00024 0.71249 0.99442 1.22283 1.01917 1.03799 0.93182 1.22018 0.93205 1.02932 1.02180 1.22363 0.97908 1.05550 0.96327 1.81792 1.05676 0.96366 1.22654 1.74717 1.12587 1.10270 1.11294 1.20789 0.96237 0.82361 0.93923 0.90847 1.21129 0.98289 0.93378 0.85271 1.42490 1.78733 1.15631 1.01490 1.19655 1.34736 0.98217 0.84768 0.90319 1.25591 1.02883 0.96727 1.01654 1.69883 1.53147 1.10245 1.28773 0.85115 0.77947 0.76901 0.79642 1.21383 1.22432 1.19160 1.22448 1.02072 1.03577 0.90393 1.23071 0.95193 0.99129 1.02270 1.22811 1.03614 0.97036 0.96432 0.91126 0.91211 0.90469 0.76505 0.92169 0.86553 0.91325 0.93085 0.86842 0.91513 0.90879 0.86189 0.93098 0.94771 0.94670 0.79773 0.94320 0.85811 0.89723 0.86029 0.86661 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.02 8.92 127.77 1.14 4.16 16 2 N -0.58 -21.88 2.12 -826.37 -1.76 -23.63 16 3 C 0.60 24.65 7.37 86.69 0.64 25.29 16 4 O -0.58 -26.54 16.20 -4.01 -0.06 -26.61 16 5 C -0.12 -4.28 6.70 40.82 0.27 -4.01 16 6 C 0.10 2.97 10.44 83.85 0.88 3.84 16 7 N -0.34 -8.71 3.44 -306.91 -1.06 -9.77 16 8 C 0.16 2.55 1.25 3.61 0.00 2.55 16 9 C -0.15 -1.69 8.74 71.98 0.63 -1.06 16 10 C -0.15 -2.13 8.11 71.98 0.58 -1.54 16 11 C -0.16 -2.27 8.30 71.98 0.60 -1.67 16 12 N -0.09 -2.73 12.91 37.02 0.48 -2.25 16 13 N -0.22 -7.70 8.80 -49.99 -0.44 -8.14 16 14 C 0.17 6.32 2.37 44.99 0.11 6.43 16 15 H 0.07 3.14 6.66 -2.39 -0.02 3.12 16 16 C 0.15 6.23 5.50 86.38 0.48 6.70 16 17 N -0.74 -40.45 5.43 -343.45 -1.87 -42.32 16 18 C -0.24 -14.14 9.99 84.04 0.84 -13.30 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 21 N -0.97 -62.57 13.06 21.65 0.28 -62.29 16 22 Si 0.98 47.95 29.55 68.60 2.03 49.97 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.17 -4.55 4.83 -10.80 -0.05 -4.60 16 27 C -0.16 -3.74 10.18 30.62 0.31 -3.43 16 28 C -0.16 -3.97 10.13 30.62 0.31 -3.66 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.32 6.54 -2.39 -0.02 2.30 16 31 H 0.08 2.95 5.30 -2.39 -0.01 2.94 16 32 H 0.22 5.34 7.62 -2.91 -0.02 5.32 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 39 H 0.07 0.99 7.43 -2.39 -0.02 0.98 16 40 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.03 1.39 6.86 -2.39 -0.02 1.38 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.37 22.31 7.06 -92.71 -0.65 21.66 16 45 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 47 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 48 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -78.80 406.74 5.09 -73.72 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: 0.28 Total: 39.74 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.20 Total: 11.58 kcal Atomic # 7 Polarization: -144.04 SS G_CDS: -4.36 Total: -148.40 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.61 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.97 kcal Total: -78.80 5.09 -73.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734294968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.808 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds