Wall clock time and date at job start Tue Mar 31 2020 18:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 C 1.53000 * 109.47065 * 240.00101 * 2 1 3 5 5 N 1.46498 * 109.47011 * 120.00037 * 2 1 3 6 6 C 1.34588 * 125.75157 * 75.02219 * 5 2 1 7 7 N 1.30863 * 107.62710 * 179.72729 * 6 5 2 8 8 C 1.34556 * 107.27101 * 0.36395 * 7 6 5 9 9 C 1.47869 * 126.05197 * 179.89297 * 8 7 6 10 10 O 1.21553 * 120.00090 * 179.68995 * 9 8 7 11 11 N 1.34777 * 119.99621 * 359.68696 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72373 * 11 9 8 13 13 H 1.09004 * 110.01965 * 325.33758 * 12 11 9 14 14 C 1.53869 * 110.03382 * 86.73307 * 12 11 9 15 15 C 1.54268 * 106.60150 * 119.28455 * 14 12 11 16 16 C 1.54886 * 104.19503 * 23.61168 * 15 14 12 17 17 H 1.09000 * 110.75812 * 80.55473 * 16 15 14 18 18 C 1.53002 * 110.75743 * 203.74510 * 16 15 14 19 19 N 1.46499 * 109.46909 * 293.54463 * 18 16 15 20 20 C 1.36936 * 119.99890 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00384 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00147 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00076 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47038 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47092 * 209.99982 * 24 22 20 27 27 H 1.48498 * 109.47010 * 330.00151 * 24 22 20 28 28 C 1.54267 * 110.03152 * 203.89945 * 12 11 9 29 29 N 1.28857 * 125.74757 * 254.97375 * 5 2 1 30 30 H 1.08995 * 109.47141 * 299.99688 * 1 2 3 31 31 H 1.08992 * 109.47207 * 60.00401 * 1 2 3 32 32 H 1.09005 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47099 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47276 * 299.99956 * 3 2 1 35 35 H 1.09001 * 109.47339 * 60.00219 * 3 2 1 36 36 H 1.08996 * 109.47336 * 299.99637 * 4 2 1 37 37 H 1.08992 * 109.47518 * 59.99689 * 4 2 1 38 38 H 1.09000 * 109.46937 * 179.97438 * 4 2 1 39 39 H 1.07997 * 126.18031 * 359.96178 * 6 5 2 40 40 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 41 41 H 1.09004 * 110.03501 * 238.57198 * 14 12 11 42 42 H 1.09000 * 110.03348 * 359.97438 * 14 12 11 43 43 H 1.08998 * 110.48894 * 142.29197 * 15 14 12 44 44 H 1.08998 * 110.48548 * 264.79787 * 15 14 12 45 45 H 1.09005 * 109.46991 * 53.54545 * 18 16 15 46 46 H 1.08999 * 109.47590 * 173.54375 * 18 16 15 47 47 H 0.96999 * 120.00176 * 0.02562 * 19 18 16 48 48 H 0.96996 * 120.00471 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.48824 * 335.78127 * 28 12 11 50 50 H 1.08999 * 110.48755 * 98.43112 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0143 -2.0221 1.3921 7 7 2.5334 -2.2507 2.5714 8 6 2.8505 -1.0575 3.1064 9 6 3.4626 -0.8339 4.4338 10 8 3.7090 0.2964 4.8068 11 7 3.7472 -1.8835 5.2299 12 6 4.3592 -1.6624 6.5425 13 1 5.0420 -0.8139 6.4977 14 6 3.2679 -1.4057 7.5964 15 6 3.4006 -2.5248 8.6499 16 6 4.8701 -2.9965 8.5199 17 1 5.5408 -2.3225 9.0527 18 6 5.0267 -4.4301 9.0312 19 7 4.7826 -4.4628 10.4753 20 6 4.8665 -5.6473 11.1572 21 1 5.1132 -6.5574 10.6305 22 6 4.6357 -5.6783 12.5257 23 7 4.3357 -4.5692 13.1677 24 14 4.7510 -7.2940 13.4560 25 1 6.1421 -7.4899 13.9373 26 1 3.8252 -7.2640 14.6167 27 1 4.3773 -8.4125 12.5535 28 6 5.1170 -2.9286 6.9922 29 7 2.5249 -0.1256 2.2376 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6519 -2.7674 0.6995 40 1 3.5509 -2.7855 4.9321 41 1 3.4215 -0.4329 8.0637 42 1 2.2829 -1.4451 7.1312 43 1 3.2129 -2.1322 9.6492 44 1 2.7144 -3.3418 8.4270 45 1 4.3085 -5.0763 8.5265 46 1 6.0381 -4.7808 8.8257 47 1 4.5607 -3.6455 10.9483 48 1 4.1740 -4.5908 14.1238 49 1 4.7097 -3.8119 6.5003 50 1 6.1820 -2.8307 6.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734483443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:14 Heat of formation + Delta-G solvation = 51.961612 kcal Electronic energy + Delta-G solvation = -28361.311500 eV Core-core repulsion = 24425.236836 eV Total energy + Delta-G solvation = -3936.074664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.82543 -39.86570 -38.06176 -37.61871 -34.79457 -33.49444 -32.78136 -31.42225 -30.89629 -28.70415 -28.25638 -28.15718 -27.78646 -25.02582 -24.00973 -23.36774 -22.14961 -20.96133 -20.53962 -20.22196 -19.29711 -18.10775 -16.99634 -16.92837 -16.87581 -16.37153 -15.59020 -15.14574 -14.89046 -14.84168 -14.58390 -14.22317 -14.13447 -13.59479 -13.44380 -13.17545 -13.13345 -13.11166 -12.99720 -12.70864 -12.52304 -12.42110 -12.04271 -11.97966 -11.66438 -11.60947 -11.57086 -10.99490 -10.80241 -10.72666 -10.70855 -10.66335 -10.42237 -10.22721 -10.22222 -10.11933 -9.89788 -9.84787 -9.60511 -9.03584 -8.80198 -6.83962 -5.70097 -2.97968 1.16863 1.72682 1.82356 2.92500 3.25758 3.47767 3.52597 3.54472 3.66887 3.85091 3.94005 4.04987 4.31973 4.51603 4.63714 4.70251 4.79121 4.83297 4.87307 4.88828 4.95538 5.01598 5.10295 5.15747 5.23398 5.40842 5.54616 5.58795 5.61778 5.69016 5.73387 5.76850 5.78952 5.94403 6.00619 6.02572 6.15387 6.18754 6.24083 6.34618 6.41305 6.55156 6.67339 6.70368 6.88851 7.02685 7.36286 7.75858 7.77513 8.11724 8.49223 9.60198 10.19957 10.54674 11.52931 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.001733 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.909212 B =16155.485884 C =16501.817921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.293 5.293 6 C 0.189 3.811 7 N -0.483 5.483 8 C 0.139 3.861 9 C 0.614 3.386 10 O -0.521 6.521 11 N -0.700 5.700 12 C 0.143 3.857 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.095 4.095 17 H 0.079 0.921 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.120 4.120 29 N -0.247 5.247 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.222 0.778 40 H 0.409 0.591 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 9.945 -34.204 36.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.106 4.106 7 N -0.208 5.208 8 C -0.141 4.141 9 C 0.396 3.604 10 O -0.394 6.394 11 N -0.352 5.352 12 C 0.039 3.961 13 H 0.110 0.890 14 C -0.173 4.173 15 C -0.149 4.149 16 C -0.115 4.115 17 H 0.097 0.903 18 C 0.034 3.966 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.159 4.159 29 N -0.085 5.085 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.245 0.755 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.088 10.971 -33.594 36.044 hybrid contribution -0.352 -1.273 0.223 1.339 sum -7.440 9.699 -33.371 35.540 Atomic orbital electron populations 1.22272 0.91632 1.03712 1.04233 1.21185 0.95384 0.94383 0.80602 1.22003 1.02611 0.92200 1.03866 1.22265 1.02737 1.01190 0.95651 1.47807 1.41418 1.06286 1.13472 1.26311 1.01568 0.86452 0.96297 1.71286 1.16475 1.25923 1.07146 1.23818 1.06455 0.85672 0.98134 1.16302 0.78095 0.85148 0.80896 1.90828 1.52554 1.22505 1.73481 1.45947 1.62233 1.09371 1.17673 1.21804 0.94588 0.99292 0.80443 0.89013 1.22603 0.98380 0.99872 0.96406 1.22332 0.96607 0.97274 0.98673 1.22261 0.96897 0.98750 0.93546 0.90303 1.20635 0.97309 0.92203 0.86481 1.42344 1.84626 1.08599 1.01989 1.19246 1.39524 0.87559 0.90528 0.91261 1.24732 1.02814 0.96989 0.96607 1.69658 1.54685 1.25551 1.08371 0.86196 0.77309 0.83164 0.79569 1.21799 1.21837 1.20834 1.22632 1.00040 0.96374 0.96858 1.74298 1.13361 1.25458 0.95411 0.91172 0.89507 0.91277 0.91239 0.90241 0.90476 0.91062 0.89247 0.91103 0.76220 0.75465 0.91217 0.91728 0.91030 0.91435 0.96333 0.96466 0.78224 0.93593 0.90685 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 8.72 37.16 0.32 -0.17 16 2 C 0.17 0.74 1.23 -131.82 -0.16 0.58 16 3 C -0.15 -0.74 8.04 37.16 0.30 -0.44 16 4 C -0.16 -0.31 8.28 37.16 0.31 -0.01 16 5 N -0.29 -2.40 3.17 -49.84 -0.16 -2.56 16 6 C 0.19 1.44 11.71 -90.48 -1.06 0.38 16 7 N -0.48 -5.39 11.09 -12.36 -0.14 -5.52 16 8 C 0.14 1.85 7.96 -156.35 -1.24 0.60 16 9 C 0.61 9.07 7.82 -12.32 -0.10 8.97 16 10 O -0.52 -9.27 16.76 5.32 0.09 -9.19 16 11 N -0.70 -8.95 4.99 -53.66 -0.27 -9.22 16 12 C 0.14 1.90 3.23 -66.82 -0.22 1.68 16 13 H 0.09 1.29 7.60 -51.93 -0.39 0.90 16 14 C -0.13 -1.90 6.59 -25.62 -0.17 -2.07 16 15 C -0.11 -1.78 5.97 -25.07 -0.15 -1.93 16 16 C -0.10 -1.56 2.96 -88.62 -0.26 -1.82 16 17 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.16 3.27 5.70 -4.04 -0.02 3.25 16 19 N -0.73 -18.82 5.45 -59.91 -0.33 -19.15 16 20 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.12 -1.58 5.97 -25.07 -0.15 -1.73 16 29 N -0.25 -3.05 11.09 32.08 0.36 -2.69 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.53 8.02 -51.93 -0.42 0.11 16 36 H 0.07 0.05 7.34 -51.93 -0.38 -0.33 16 37 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.22 0.63 7.53 -52.49 -0.40 0.24 16 40 H 0.41 4.65 8.05 -40.82 -0.33 4.32 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 45 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 10.36 7.53 -40.82 -0.31 10.06 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.92 7.63 -51.93 -0.40 0.53 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 407.73 15.07 6.14 6.14 Total: -1.00 -36.05 407.73 -9.93 -45.98 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.49 Total: 6.59 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.85 Total: -0.16 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: 0.19 Total: -67.12 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.05 -9.93 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734483443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.942 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds