Wall clock time and date at job start Tue Mar 31 2020 18:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46978 * 2 1 4 4 C 1.53000 * 109.47065 * 240.00101 * 2 1 3 5 5 N 1.46498 * 109.47011 * 120.00037 * 2 1 3 6 6 C 1.34588 * 125.75157 * 75.02219 * 5 2 1 7 7 N 1.30863 * 107.62710 * 179.72729 * 6 5 2 8 8 C 1.34556 * 107.27101 * 0.36395 * 7 6 5 9 9 C 1.47869 * 126.05197 * 179.89297 * 8 7 6 10 10 O 1.21553 * 120.00090 * 179.68995 * 9 8 7 11 11 N 1.34777 * 119.99621 * 359.68696 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72373 * 11 9 8 13 13 H 1.09004 * 110.01965 * 325.33758 * 12 11 9 14 14 C 1.53869 * 110.03382 * 86.73307 * 12 11 9 15 15 C 1.54268 * 106.60150 * 119.28455 * 14 12 11 16 16 C 1.54886 * 104.19503 * 23.61168 * 15 14 12 17 17 H 1.09000 * 110.75812 * 80.55473 * 16 15 14 18 18 C 1.53002 * 110.75743 * 203.74510 * 16 15 14 19 19 N 1.46499 * 109.46909 * 293.54463 * 18 16 15 20 20 C 1.36936 * 119.99890 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00384 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00147 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99949 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00076 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47038 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47092 * 209.99982 * 24 22 20 27 27 H 1.48498 * 109.47010 * 330.00151 * 24 22 20 28 28 C 1.54267 * 110.03152 * 203.89945 * 12 11 9 29 29 N 1.28857 * 125.74757 * 254.97375 * 5 2 1 30 30 H 1.08995 * 109.47141 * 299.99688 * 1 2 3 31 31 H 1.08992 * 109.47207 * 60.00401 * 1 2 3 32 32 H 1.09005 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47099 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47276 * 299.99956 * 3 2 1 35 35 H 1.09001 * 109.47339 * 60.00219 * 3 2 1 36 36 H 1.08996 * 109.47336 * 299.99637 * 4 2 1 37 37 H 1.08992 * 109.47518 * 59.99689 * 4 2 1 38 38 H 1.09000 * 109.46937 * 179.97438 * 4 2 1 39 39 H 1.07997 * 126.18031 * 359.96178 * 6 5 2 40 40 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 41 41 H 1.09004 * 110.03501 * 238.57198 * 14 12 11 42 42 H 1.09000 * 110.03348 * 359.97438 * 14 12 11 43 43 H 1.08998 * 110.48894 * 142.29197 * 15 14 12 44 44 H 1.08998 * 110.48548 * 264.79787 * 15 14 12 45 45 H 1.09005 * 109.46991 * 53.54545 * 18 16 15 46 46 H 1.08999 * 109.47590 * 173.54375 * 18 16 15 47 47 H 0.96999 * 120.00176 * 0.02562 * 19 18 16 48 48 H 0.96996 * 120.00471 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.48824 * 335.78127 * 28 12 11 50 50 H 1.08999 * 110.48755 * 98.43112 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0143 -2.0221 1.3921 7 7 2.5334 -2.2507 2.5714 8 6 2.8505 -1.0575 3.1064 9 6 3.4626 -0.8339 4.4338 10 8 3.7090 0.2964 4.8068 11 7 3.7472 -1.8835 5.2299 12 6 4.3592 -1.6624 6.5425 13 1 5.0420 -0.8139 6.4977 14 6 3.2679 -1.4057 7.5964 15 6 3.4006 -2.5248 8.6499 16 6 4.8701 -2.9965 8.5199 17 1 5.5408 -2.3225 9.0527 18 6 5.0267 -4.4301 9.0312 19 7 4.7826 -4.4628 10.4753 20 6 4.8665 -5.6473 11.1572 21 1 5.1132 -6.5574 10.6305 22 6 4.6357 -5.6783 12.5257 23 7 4.3357 -4.5692 13.1677 24 14 4.7510 -7.2940 13.4560 25 1 6.1421 -7.4899 13.9373 26 1 3.8252 -7.2640 14.6167 27 1 4.3773 -8.4125 12.5535 28 6 5.1170 -2.9286 6.9922 29 7 2.5249 -0.1256 2.2376 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6519 -2.7674 0.6995 40 1 3.5509 -2.7855 4.9321 41 1 3.4215 -0.4329 8.0637 42 1 2.2829 -1.4451 7.1312 43 1 3.2129 -2.1322 9.6492 44 1 2.7144 -3.3418 8.4270 45 1 4.3085 -5.0763 8.5265 46 1 6.0381 -4.7808 8.8257 47 1 4.5607 -3.6455 10.9483 48 1 4.1740 -4.5908 14.1238 49 1 4.7097 -3.8119 6.5003 50 1 6.1820 -2.8307 6.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734483443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:13 Heat of formation + Delta-G solvation = 28.461665 kcal Electronic energy + Delta-G solvation = -28362.330534 eV Core-core repulsion = 24425.236836 eV Total energy + Delta-G solvation = -3937.093698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54687 -41.00934 -39.19815 -38.20470 -36.48187 -34.90088 -33.62825 -32.91986 -32.00530 -30.14712 -29.19212 -28.44862 -28.40318 -26.47489 -25.30343 -24.02153 -23.93294 -21.94857 -21.46604 -21.09743 -20.62124 -19.11384 -18.87083 -17.70369 -17.55147 -17.41581 -16.78381 -16.52125 -16.03498 -15.73335 -15.49553 -15.18749 -15.07098 -14.95007 -14.86111 -14.62230 -14.18726 -13.80709 -13.46559 -13.31294 -13.24909 -13.21899 -13.03167 -12.86269 -12.77292 -12.73851 -12.64593 -12.39065 -12.15579 -12.06003 -12.00556 -11.81207 -11.61176 -11.51218 -11.47245 -11.43011 -11.42687 -11.39789 -10.88772 -10.62063 -10.14301 -8.95119 -7.92093 -5.20263 0.30401 1.08755 1.15152 1.48447 1.50542 1.58912 1.98821 2.23581 2.58491 3.06773 3.26840 3.41211 3.55792 3.60993 3.65589 3.76405 3.79128 3.86825 3.94146 4.16847 4.40446 4.51066 4.52115 4.55686 4.58040 4.58978 4.60943 4.67599 4.68434 4.77576 4.77893 4.80121 4.91964 4.92487 5.01568 5.09730 5.10659 5.15678 5.16324 5.21556 5.23729 5.35204 5.36919 5.49323 5.53699 5.57552 5.67988 6.30306 6.34066 6.93401 7.10420 7.36522 8.14653 8.37418 9.31632 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.001733 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.909212 B =16155.485884 C =16501.817921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.149 4.149 4 C -0.156 4.156 5 N -0.287 5.287 6 C 0.201 3.799 7 N -0.502 5.502 8 C 0.112 3.888 9 C 0.612 3.388 10 O -0.562 6.562 11 N -0.687 5.687 12 C 0.149 3.851 13 H 0.086 0.914 14 C -0.125 4.125 15 C -0.106 4.106 16 C -0.089 4.089 17 H 0.072 0.928 18 C 0.160 3.840 19 N -0.745 5.745 20 C -0.244 4.244 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.269 1.269 28 C -0.106 4.106 29 N -0.273 5.273 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.270 0.730 40 H 0.418 0.582 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.089 0.911 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 8.318 -37.483 39.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.228 5.228 8 C -0.167 4.167 9 C 0.395 3.605 10 O -0.438 6.438 11 N -0.339 5.339 12 C 0.045 3.955 13 H 0.105 0.895 14 C -0.164 4.164 15 C -0.144 4.144 16 C -0.108 4.108 17 H 0.091 0.909 18 C 0.034 3.966 19 N -0.387 5.387 20 C -0.376 4.376 21 H 0.094 0.906 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.803 3.197 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.194 1.194 28 C -0.144 4.144 29 N -0.114 5.114 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.286 0.714 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.107 0.893 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.702 9.308 -36.939 38.865 hybrid contribution -0.211 -0.732 1.084 1.325 sum -7.913 8.575 -35.855 37.706 Atomic orbital electron populations 1.22290 0.90177 1.04642 1.04331 1.21658 0.96428 0.94007 0.80249 1.22015 1.01482 0.93101 1.04043 1.22304 1.01963 1.02343 0.94744 1.48201 1.40101 1.06828 1.13200 1.27206 0.99477 0.86913 0.95708 1.71230 1.17618 1.25262 1.08724 1.23523 1.08281 0.86847 0.98022 1.16568 0.77552 0.84751 0.81605 1.90792 1.54424 1.23973 1.74587 1.45812 1.61516 1.09505 1.17095 1.21660 0.94111 0.99304 0.80461 0.89546 1.22503 0.98803 0.98997 0.96080 1.22227 0.96446 0.97575 0.98105 1.22134 0.96831 0.96132 0.95746 0.90944 1.20801 0.97327 0.94768 0.83719 1.42571 1.84581 1.07459 1.04120 1.19676 1.38188 0.88673 0.91046 0.90580 1.25579 1.03437 1.00350 0.97685 1.69823 1.56362 1.27702 1.08259 0.85126 0.77032 0.79520 0.78003 1.21440 1.22295 1.19362 1.22528 1.01158 0.96680 0.94055 1.74226 1.14103 1.26469 0.96582 0.93601 0.86872 0.89921 0.92968 0.87238 0.93097 0.89053 0.86848 0.92352 0.71435 0.74420 0.91437 0.91740 0.93125 0.91982 0.95848 0.96020 0.79445 0.94112 0.89252 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 8.72 71.98 0.63 0.07 16 2 C 0.16 1.08 1.23 3.60 0.00 1.09 16 3 C -0.15 -1.39 8.04 71.98 0.58 -0.81 16 4 C -0.16 -0.07 8.28 71.98 0.60 0.53 16 5 N -0.29 -4.33 3.17 -311.60 -0.99 -5.32 16 6 C 0.20 2.58 11.71 180.30 2.11 4.69 16 7 N -0.50 -10.58 11.09 -193.03 -2.14 -12.72 16 8 C 0.11 2.99 7.96 137.12 1.09 4.09 16 9 C 0.61 18.44 7.82 86.79 0.68 19.12 16 10 O -0.56 -20.79 16.76 -3.88 -0.07 -20.85 16 11 N -0.69 -17.28 4.99 -441.95 -2.21 -19.48 16 12 C 0.15 3.89 3.23 45.71 0.15 4.04 16 13 H 0.09 2.42 7.60 -2.38 -0.02 2.40 16 14 C -0.13 -3.58 6.59 31.32 0.21 -3.37 16 15 C -0.11 -3.43 5.97 31.67 0.19 -3.25 16 16 C -0.09 -2.87 2.96 -9.50 -0.03 -2.90 16 17 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 18 C 0.16 6.40 5.70 86.38 0.49 6.89 16 19 N -0.74 -38.62 5.45 -343.44 -1.87 -40.49 16 20 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 24 Si 0.97 46.95 29.55 68.60 2.03 48.97 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 C -0.11 -2.60 5.97 31.67 0.19 -2.41 16 29 N -0.27 -6.84 11.09 -52.43 -0.58 -7.42 16 30 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.08 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.05 0.74 8.02 -2.39 -0.02 0.72 16 36 H 0.09 -0.30 7.34 -2.39 -0.02 -0.32 16 37 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.27 0.31 7.53 -2.91 -0.02 0.29 16 40 H 0.42 9.05 8.05 -92.71 -0.75 8.30 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.85 7.92 -2.39 -0.02 1.83 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.07 8.02 -2.39 -0.02 2.05 16 45 H 0.02 0.93 8.10 -2.38 -0.02 0.91 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.37 20.68 7.53 -92.71 -0.70 19.98 16 48 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.09 1.98 7.63 -2.39 -0.02 1.96 16 50 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -80.79 407.73 2.15 -78.65 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.50 Total: 28.51 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 8.19 Total: 10.57 kcal Atomic # 7 Polarization: -138.35 SS G_CDS: -7.50 Total: -145.85 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -80.79 2.15 -78.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734483443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.107 kcal (2) G-P(sol) polarization free energy of solvation -80.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds