Wall clock time and date at job start Tue Mar 31 2020 18:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 N 1.46507 * 109.46859 * 119.99898 * 2 1 3 5 5 C 1.35030 * 124.88223 * 274.99875 * 4 2 1 6 6 C 1.35365 * 107.22965 * 179.72502 * 5 4 2 7 7 C 1.41504 * 105.49755 * 0.38175 * 6 5 4 8 8 C 1.47714 * 126.51651 * 179.87746 * 7 6 5 9 9 O 1.21577 * 120.00087 * 359.71213 * 8 7 6 10 10 N 1.34776 * 120.00053 * 179.43233 * 8 7 6 11 11 C 1.46501 * 119.99974 * 180.27302 * 10 8 7 12 12 C 1.53004 * 109.47160 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.46902 * 111.00071 * 294.29877 * 13 12 11 15 15 C 1.53240 * 109.33943 * 172.74694 * 14 13 12 16 16 N 1.47083 * 108.51833 * 53.83594 * 15 14 13 17 17 C 1.36932 * 120.87999 * 128.83731 * 16 15 14 18 18 H 1.08005 * 119.99902 * 206.55674 * 17 16 15 19 19 C 1.38813 * 120.00297 * 26.55737 * 17 16 15 20 20 N 1.31618 * 120.00115 * 17.02974 * 19 17 16 21 21 Si 1.86807 * 120.00049 * 197.02809 * 19 17 16 22 22 H 1.48499 * 109.46901 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46768 * 119.99877 * 21 19 17 24 24 H 1.48496 * 109.46923 * 239.99982 * 21 19 17 25 25 C 1.47081 * 118.23691 * 308.81414 * 16 15 14 26 26 C 1.46906 * 110.99554 * 170.00287 * 13 12 11 27 27 N 1.28470 * 124.88338 * 94.97234 * 4 2 1 28 28 H 1.09005 * 109.47184 * 60.00184 * 1 2 3 29 29 H 1.09002 * 109.47489 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47480 * 300.00493 * 1 2 3 31 31 H 1.08993 * 109.47014 * 239.99281 * 2 1 3 32 32 H 1.09004 * 109.46962 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46903 * 299.99230 * 3 2 1 34 34 H 1.08999 * 109.47509 * 60.00114 * 3 2 1 35 35 H 1.08004 * 126.38580 * 0.02562 * 5 4 2 36 36 H 1.07993 * 127.25543 * 180.26805 * 6 5 4 37 37 H 0.96994 * 120.00232 * 0.27822 * 10 8 7 38 38 H 1.09000 * 109.47303 * 300.00769 * 11 10 8 39 39 H 1.09001 * 109.47033 * 60.00741 * 11 10 8 40 40 H 1.09002 * 109.47046 * 300.00709 * 12 11 10 41 41 H 1.09001 * 109.46659 * 60.00369 * 12 11 10 42 42 H 1.08998 * 109.49892 * 292.71167 * 14 13 12 43 43 H 1.09003 * 109.48642 * 52.79556 * 14 13 12 44 44 H 1.09000 * 109.63164 * 294.13032 * 15 14 13 45 45 H 1.08995 * 109.63043 * 173.54475 * 15 14 13 46 46 H 0.96991 * 120.00282 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.62886 * 291.47676 * 25 16 15 48 48 H 1.09002 * 109.78747 * 170.99321 * 25 16 15 49 49 H 1.08990 * 109.49389 * 307.20999 * 26 13 12 50 50 H 1.09003 * 109.49150 * 67.29502 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1846 -0.1151 2.4064 6 6 2.6424 -1.0728 3.2463 7 6 2.7460 -2.2459 2.4617 8 6 3.2052 -3.5726 2.9207 9 8 3.5457 -3.7316 4.0770 10 7 3.2415 -4.6084 2.0591 11 6 3.6913 -5.9257 2.5159 12 6 3.6375 -6.9154 1.3502 13 7 4.0880 -8.2364 1.8084 14 6 5.5073 -8.2069 2.1860 15 6 5.8904 -9.5459 2.8252 16 7 5.5146 -10.6283 1.9029 17 6 6.4177 -11.5945 1.5482 18 1 6.3175 -12.1062 0.6023 19 6 7.4619 -11.9165 2.4042 20 7 7.4095 -11.5590 3.6698 21 14 8.9416 -12.8573 1.7599 22 1 8.7575 -13.1392 0.3136 23 1 10.1684 -12.0433 1.9539 24 1 9.0748 -14.1376 2.5003 25 6 4.1430 -10.6455 1.3723 26 6 3.8287 -9.2633 0.7903 27 7 2.3493 -1.9310 1.2449 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.9847 0.9159 2.6584 36 1 2.8805 -0.9641 4.2941 37 1 2.9698 -4.4817 1.1367 38 1 4.7149 -5.8529 2.8834 39 1 3.0409 -6.2736 3.3185 40 1 2.6141 -6.9883 0.9824 41 1 4.2881 -6.5674 0.5479 42 1 6.1167 -8.0403 1.2978 43 1 5.6769 -7.4012 2.9003 44 1 5.3576 -9.6672 3.7684 45 1 6.9654 -9.5728 3.0026 46 1 8.1393 -11.7836 4.2679 47 1 3.4423 -10.8724 2.1758 48 1 4.0595 -11.3999 0.5899 49 1 2.7810 -9.2237 0.4924 50 1 4.4615 -9.0820 -0.0785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752374277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:33 Heat of formation + Delta-G solvation = 76.928056 kcal Electronic energy + Delta-G solvation = -28380.563194 eV Core-core repulsion = 24445.571156 eV Total energy + Delta-G solvation = -3934.992038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.98678 -39.44971 -38.11937 -36.31838 -35.34161 -33.89667 -31.52602 -31.22398 -30.72609 -29.89170 -28.72118 -28.01174 -26.02760 -24.37098 -23.27510 -22.73421 -22.39356 -21.22102 -20.71745 -20.02807 -19.05983 -18.10687 -17.04023 -16.74574 -16.35576 -15.98525 -15.44230 -15.06126 -14.87764 -14.45753 -14.37289 -14.18909 -14.10031 -13.70462 -13.54782 -13.41639 -13.34284 -13.26371 -12.98546 -12.89753 -12.79832 -12.45972 -12.07247 -11.84851 -11.58155 -11.38813 -11.23343 -11.18449 -11.02076 -10.72410 -10.40960 -10.28052 -10.15711 -10.01114 -9.70904 -9.56968 -9.54591 -9.35070 -8.96587 -8.47082 -7.83184 -6.62458 -5.73689 -3.14901 1.38677 1.89730 2.03052 3.09215 3.36846 3.40127 3.47668 3.49861 3.79724 4.13699 4.33346 4.34783 4.41068 4.51189 4.56236 4.77317 4.83902 4.95883 5.01436 5.10507 5.12915 5.25271 5.29802 5.43483 5.44370 5.45020 5.47598 5.53290 5.60286 5.88242 5.95887 6.02436 6.11092 6.15137 6.17259 6.26435 6.37467 6.42710 6.47145 6.58629 6.73813 6.96958 7.28953 7.38730 7.59390 7.68790 7.70953 7.74459 7.85886 8.19590 8.47764 9.25510 9.89044 10.47678 11.35108 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.001814 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.781101 B =15429.570143 C =15777.154798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 C -0.165 4.165 4 N -0.277 5.277 5 C -0.019 4.019 6 C -0.178 4.178 7 C -0.015 4.015 8 C 0.602 3.398 9 O -0.530 6.530 10 N -0.716 5.716 11 C 0.121 3.879 12 C 0.045 3.955 13 N -0.529 5.529 14 C 0.030 3.970 15 C 0.177 3.823 16 N -0.596 5.596 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.149 3.851 26 C 0.046 3.954 27 N -0.262 5.262 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.404 0.596 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.065 0.935 44 H 0.028 0.972 45 H 0.089 0.911 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.531 28.389 -8.716 33.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.223 4.223 4 N -0.066 5.066 5 C -0.162 4.162 6 C -0.206 4.206 7 C -0.175 4.175 8 C 0.386 3.614 9 O -0.404 6.404 10 N -0.368 5.368 11 C -0.002 4.002 12 C -0.084 4.084 13 N -0.254 5.254 14 C -0.098 4.098 15 C 0.051 3.949 16 N -0.319 5.319 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.022 3.978 26 C -0.083 4.083 27 N -0.098 5.098 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.613 27.661 -8.505 32.419 hybrid contribution 1.199 0.266 -0.676 1.402 sum -13.414 27.927 -9.181 32.313 Atomic orbital electron populations 1.22234 0.92759 1.03804 1.03565 1.21605 0.95585 0.93386 0.85407 1.22202 1.02612 0.93429 1.04062 1.45747 1.45392 1.05929 1.09580 1.22747 1.07085 1.00851 0.85498 1.21794 1.06450 0.91013 1.01352 1.21976 1.08390 0.96254 0.90909 1.16855 0.77654 0.81808 0.85049 1.90824 1.48507 1.83521 1.17581 1.45793 1.67218 1.09793 1.13950 1.21425 1.01095 0.80167 0.97542 1.22190 1.00561 0.90446 0.95170 1.61876 1.20250 1.02832 1.40458 1.23011 0.86074 1.01736 0.99024 1.20875 1.00858 0.82308 0.90813 1.44134 1.06562 1.27397 1.53808 1.19228 1.04942 1.14314 0.99599 0.91628 1.25031 1.00606 0.99469 0.94708 1.70038 1.31926 1.50206 1.02512 0.86234 0.83120 0.79233 0.78256 1.20360 1.21600 1.21733 1.20970 0.87960 0.92397 0.96497 1.22623 0.98912 0.94233 0.92544 1.73476 1.16219 0.97920 1.22200 0.89948 0.91270 0.91552 0.87212 0.91177 0.89548 0.91165 0.80356 0.82022 0.76187 0.90870 0.90206 0.90844 0.94954 0.95606 0.91691 0.95400 0.89308 0.93654 0.95604 0.92596 0.91983 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 9.52 37.16 0.35 -0.21 16 2 C 0.14 0.62 3.80 -67.93 -0.26 0.36 16 3 C -0.17 -0.36 8.80 37.16 0.33 -0.03 16 4 N -0.28 -2.21 3.22 -54.83 -0.18 -2.39 16 5 C -0.02 -0.14 10.54 -17.17 -0.18 -0.33 16 6 C -0.18 -1.86 10.81 -39.36 -0.43 -2.28 16 7 C -0.02 -0.19 7.13 -82.76 -0.59 -0.78 16 8 C 0.60 8.87 7.83 -12.39 -0.10 8.77 16 9 O -0.53 -9.58 16.93 5.30 0.09 -9.49 16 10 N -0.72 -9.30 5.55 -61.29 -0.34 -9.64 16 11 C 0.12 1.76 5.60 -4.04 -0.02 1.73 16 12 C 0.05 0.65 5.08 -3.82 -0.02 0.63 16 13 N -0.53 -9.57 4.63 -234.32 -1.08 -10.65 16 14 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 15 C 0.18 4.41 5.42 -3.60 -0.02 4.39 16 16 N -0.60 -15.42 3.04 -172.01 -0.52 -15.94 16 17 C -0.25 -7.04 9.63 -15.06 -0.15 -7.18 16 18 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 19 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 20 N -0.90 -26.75 11.15 55.49 0.62 -26.13 16 21 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 26 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 27 N -0.26 -2.86 11.67 33.42 0.39 -2.47 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.07 0.11 7.05 -51.93 -0.37 -0.26 16 35 H 0.18 0.66 7.16 -52.48 -0.38 0.29 16 36 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.40 4.43 8.20 -40.82 -0.33 4.10 16 38 H 0.07 1.17 6.40 -51.93 -0.33 0.84 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 41 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.22 6.16 -51.93 -0.32 0.90 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 49 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 50 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -34.52 400.90 -9.58 -44.10 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.33 Total: -0.04 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.23 Total: 9.60 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.12 Total: -67.22 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.52 -9.58 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.023 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds