Wall clock time and date at job start Tue Mar 31 2020 18:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47245 * 2 1 4 4 N 1.46507 * 109.46859 * 119.99898 * 2 1 3 5 5 C 1.35030 * 124.88223 * 274.99875 * 4 2 1 6 6 C 1.35365 * 107.22965 * 179.72502 * 5 4 2 7 7 C 1.41504 * 105.49755 * 0.38175 * 6 5 4 8 8 C 1.47714 * 126.51651 * 179.87746 * 7 6 5 9 9 O 1.21577 * 120.00087 * 359.71213 * 8 7 6 10 10 N 1.34776 * 120.00053 * 179.43233 * 8 7 6 11 11 C 1.46501 * 119.99974 * 180.27302 * 10 8 7 12 12 C 1.53004 * 109.47160 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.46902 * 111.00071 * 294.29877 * 13 12 11 15 15 C 1.53240 * 109.33943 * 172.74694 * 14 13 12 16 16 N 1.47083 * 108.51833 * 53.83594 * 15 14 13 17 17 C 1.36932 * 120.87999 * 128.83731 * 16 15 14 18 18 H 1.08005 * 119.99902 * 206.55674 * 17 16 15 19 19 C 1.38813 * 120.00297 * 26.55737 * 17 16 15 20 20 N 1.31618 * 120.00115 * 17.02974 * 19 17 16 21 21 Si 1.86807 * 120.00049 * 197.02809 * 19 17 16 22 22 H 1.48499 * 109.46901 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46768 * 119.99877 * 21 19 17 24 24 H 1.48496 * 109.46923 * 239.99982 * 21 19 17 25 25 C 1.47081 * 118.23691 * 308.81414 * 16 15 14 26 26 C 1.46906 * 110.99554 * 170.00287 * 13 12 11 27 27 N 1.28470 * 124.88338 * 94.97234 * 4 2 1 28 28 H 1.09005 * 109.47184 * 60.00184 * 1 2 3 29 29 H 1.09002 * 109.47489 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47480 * 300.00493 * 1 2 3 31 31 H 1.08993 * 109.47014 * 239.99281 * 2 1 3 32 32 H 1.09004 * 109.46962 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46903 * 299.99230 * 3 2 1 34 34 H 1.08999 * 109.47509 * 60.00114 * 3 2 1 35 35 H 1.08004 * 126.38580 * 0.02562 * 5 4 2 36 36 H 1.07993 * 127.25543 * 180.26805 * 6 5 4 37 37 H 0.96994 * 120.00232 * 0.27822 * 10 8 7 38 38 H 1.09000 * 109.47303 * 300.00769 * 11 10 8 39 39 H 1.09001 * 109.47033 * 60.00741 * 11 10 8 40 40 H 1.09002 * 109.47046 * 300.00709 * 12 11 10 41 41 H 1.09001 * 109.46659 * 60.00369 * 12 11 10 42 42 H 1.08998 * 109.49892 * 292.71167 * 14 13 12 43 43 H 1.09003 * 109.48642 * 52.79556 * 14 13 12 44 44 H 1.09000 * 109.63164 * 294.13032 * 15 14 13 45 45 H 1.08995 * 109.63043 * 173.54475 * 15 14 13 46 46 H 0.96991 * 120.00282 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.62886 * 291.47676 * 25 16 15 48 48 H 1.09002 * 109.78747 * 170.99321 * 25 16 15 49 49 H 1.08990 * 109.49389 * 307.20999 * 26 13 12 50 50 H 1.09003 * 109.49150 * 67.29502 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1846 -0.1151 2.4064 6 6 2.6424 -1.0728 3.2463 7 6 2.7460 -2.2459 2.4617 8 6 3.2052 -3.5726 2.9207 9 8 3.5457 -3.7316 4.0770 10 7 3.2415 -4.6084 2.0591 11 6 3.6913 -5.9257 2.5159 12 6 3.6375 -6.9154 1.3502 13 7 4.0880 -8.2364 1.8084 14 6 5.5073 -8.2069 2.1860 15 6 5.8904 -9.5459 2.8252 16 7 5.5146 -10.6283 1.9029 17 6 6.4177 -11.5945 1.5482 18 1 6.3175 -12.1062 0.6023 19 6 7.4619 -11.9165 2.4042 20 7 7.4095 -11.5590 3.6698 21 14 8.9416 -12.8573 1.7599 22 1 8.7575 -13.1392 0.3136 23 1 10.1684 -12.0433 1.9539 24 1 9.0748 -14.1376 2.5003 25 6 4.1430 -10.6455 1.3723 26 6 3.8287 -9.2633 0.7903 27 7 2.3493 -1.9310 1.2449 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.9847 0.9159 2.6584 36 1 2.8805 -0.9641 4.2941 37 1 2.9698 -4.4817 1.1367 38 1 4.7149 -5.8529 2.8834 39 1 3.0409 -6.2736 3.3185 40 1 2.6141 -6.9883 0.9824 41 1 4.2881 -6.5674 0.5479 42 1 6.1167 -8.0403 1.2978 43 1 5.6769 -7.4012 2.9003 44 1 5.3576 -9.6672 3.7684 45 1 6.9654 -9.5728 3.0026 46 1 8.1393 -11.7836 4.2679 47 1 3.4423 -10.8724 2.1758 48 1 4.0595 -11.3999 0.5899 49 1 2.7810 -9.2237 0.4924 50 1 4.4615 -9.0820 -0.0785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752374277.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:32 Heat of formation + Delta-G solvation = 51.840884 kcal Electronic energy + Delta-G solvation = -28381.651055 eV Core-core repulsion = 24445.571156 eV Total energy + Delta-G solvation = -3936.079899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.68899 -40.62406 -39.68199 -36.90002 -36.70717 -35.45925 -33.33290 -31.90302 -31.66722 -31.61927 -30.07277 -28.22378 -27.69674 -25.50137 -24.67126 -24.23852 -23.45185 -22.54314 -21.48724 -20.91512 -20.74530 -18.87400 -18.69453 -17.73570 -17.35475 -17.07705 -16.80043 -16.48528 -16.02393 -15.73598 -15.58657 -15.33055 -15.26716 -15.03545 -14.91815 -14.77296 -14.58527 -14.16068 -13.97841 -13.80857 -13.25491 -13.22234 -13.06010 -13.01479 -12.85739 -12.65049 -12.58351 -12.34783 -12.21676 -12.14407 -12.03735 -11.92884 -11.86571 -11.56930 -11.48399 -11.29666 -10.60150 -10.36660 -10.15403 -9.97469 -9.31984 -8.69239 -7.87668 -5.32626 0.50238 1.18978 1.45700 1.46862 1.47157 1.57988 2.03122 2.33763 2.50551 3.06179 3.27545 3.31510 3.67218 3.72820 3.83486 3.88194 3.92947 4.04259 4.07369 4.23574 4.29344 4.34304 4.43936 4.54376 4.63772 4.64910 4.66610 4.70166 4.75539 4.76587 4.81256 4.83906 4.88572 4.90682 4.98047 5.03338 5.19049 5.19767 5.23692 5.27971 5.36463 5.37607 5.61153 5.67313 5.89901 6.12885 6.19938 6.36928 6.39591 6.90198 7.12457 7.12541 7.83512 8.38098 9.19494 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.001814 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.781101 B =15429.570143 C =15777.154798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.269 5.269 5 C 0.002 3.998 6 C -0.204 4.204 7 C -0.047 4.047 8 C 0.599 3.401 9 O -0.574 6.574 10 N -0.703 5.703 11 C 0.129 3.871 12 C 0.056 3.944 13 N -0.541 5.541 14 C 0.049 3.951 15 C 0.185 3.815 16 N -0.614 5.614 17 C -0.262 4.262 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.142 3.858 26 C 0.057 3.943 27 N -0.272 5.272 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.221 0.779 36 H 0.161 0.839 37 H 0.416 0.584 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.075 0.925 44 H -0.003 1.003 45 H 0.056 0.944 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 30.908 -11.464 36.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.059 5.059 5 C -0.141 4.141 6 C -0.232 4.232 7 C -0.205 4.205 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.355 5.355 11 C 0.005 3.995 12 C -0.072 4.072 13 N -0.266 5.266 14 C -0.081 4.081 15 C 0.059 3.941 16 N -0.338 5.338 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.584 5.584 21 Si 0.798 3.202 22 H -0.189 1.189 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.016 3.984 26 C -0.071 4.071 27 N -0.109 5.109 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.238 0.762 36 H 0.178 0.822 37 H 0.252 0.748 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.015 0.985 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.175 30.190 -11.323 36.074 hybrid contribution 1.547 -0.436 0.123 1.612 sum -14.628 29.755 -11.200 34.996 Atomic orbital electron populations 1.22224 0.91730 1.02957 1.04980 1.22019 0.96343 0.94412 0.83986 1.22224 1.02025 0.91807 1.05778 1.46244 1.43659 1.05151 1.10840 1.23273 1.04517 1.01880 0.84429 1.21991 1.07951 0.91308 1.01933 1.21748 1.10734 0.95760 0.92241 1.17234 0.76852 0.82846 0.84555 1.90787 1.50632 1.84405 1.19396 1.45628 1.66589 1.08921 1.14360 1.21204 0.99725 0.81040 0.97489 1.22159 1.02152 0.87989 0.94925 1.61763 1.18430 1.05022 1.41425 1.22634 0.87728 0.98943 0.98759 1.20606 0.98469 0.84856 0.90197 1.44417 1.08193 1.27323 1.53911 1.19590 1.05571 1.14373 0.99671 0.91198 1.25842 1.03313 1.00986 0.94862 1.70205 1.32559 1.51861 1.03735 0.85171 0.79343 0.77519 0.78193 1.18907 1.21741 1.21902 1.21159 0.85540 0.95327 0.96338 1.22485 1.01129 0.91733 0.91800 1.73407 1.16533 0.99576 1.21396 0.87535 0.93210 0.91153 0.87190 0.92068 0.87406 0.89934 0.76240 0.82178 0.74761 0.92705 0.91657 0.88070 0.93687 0.95863 0.90645 0.98489 0.92558 0.94107 0.96652 0.91746 0.88149 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.52 71.98 0.69 0.05 16 2 C 0.13 0.78 3.80 44.99 0.17 0.96 16 3 C -0.16 -0.13 8.80 71.98 0.63 0.51 16 4 N -0.27 -3.74 3.22 -327.38 -1.05 -4.79 16 5 C 0.00 0.02 10.54 83.54 0.88 0.90 16 6 C -0.20 -4.16 10.81 22.41 0.24 -3.91 16 7 C -0.05 -1.17 7.13 42.46 0.30 -0.86 16 8 C 0.60 18.09 7.83 86.75 0.68 18.77 16 9 O -0.57 -21.76 16.93 -3.96 -0.07 -21.83 16 10 N -0.70 -18.04 5.55 -466.08 -2.59 -20.63 16 11 C 0.13 3.72 5.60 86.38 0.48 4.21 16 12 C 0.06 1.47 5.08 86.31 0.44 1.91 16 13 N -0.54 -18.88 4.63 -895.24 -4.15 -23.02 16 14 C 0.05 1.98 5.46 86.38 0.47 2.45 16 15 C 0.18 9.56 5.42 86.35 0.47 10.02 16 16 N -0.61 -32.33 3.04 -698.12 -2.12 -34.45 16 17 C -0.26 -14.85 9.63 84.03 0.81 -14.04 16 18 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 19 C -0.05 -3.17 4.94 84.86 0.42 -2.75 16 20 N -0.94 -57.59 11.15 21.65 0.24 -57.35 16 21 Si 0.97 46.04 29.59 68.60 2.03 48.07 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 C 0.14 6.07 6.69 86.35 0.58 6.64 16 26 C 0.06 1.95 5.62 86.38 0.49 2.43 16 27 N -0.27 -5.64 11.67 -48.17 -0.56 -6.20 16 28 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.08 -0.11 7.05 -2.39 -0.02 -0.13 16 35 H 0.22 0.74 7.16 -2.91 -0.02 0.72 16 36 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.42 8.59 8.20 -92.71 -0.76 7.83 16 38 H 0.05 1.79 6.40 -2.39 -0.02 1.77 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 40 H 0.10 2.18 7.97 -2.39 -0.02 2.16 16 41 H 0.04 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 2.89 6.16 -2.39 -0.01 2.87 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.06 3.25 6.12 -2.39 -0.01 3.23 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 2.59 7.96 -2.39 -0.02 2.58 16 49 H 0.10 2.68 7.99 -2.39 -0.02 2.66 16 50 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.66 400.90 -0.35 -79.01 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.17 Total: 13.91 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 7.75 Total: 27.29 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -10.23 Total: -146.45 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.83 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.66 -0.35 -79.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374277.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.851 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds