Wall clock time and date at job start Tue Mar 31 2020 19:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47267 * 2 1 4 4 N 1.46502 * 109.47389 * 180.02562 * 3 2 1 5 5 C 1.34771 * 120.00098 * 90.00048 * 4 3 2 6 6 O 1.21276 * 120.00236 * 179.97438 * 5 4 3 7 7 C 1.50706 * 119.99858 * 0.02562 * 5 4 3 8 8 C 1.53004 * 109.46949 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46822 * 180.02562 * 8 7 5 10 10 C 1.35347 * 126.91396 * 274.67861 * 9 8 7 11 11 N 1.33763 * 106.50088 * 179.91067 * 10 9 8 12 12 N 1.28640 * 108.88634 * 0.36725 * 11 10 9 13 13 N 1.28720 * 110.17292 * 359.77157 * 12 11 10 14 14 H 0.96999 * 125.86194 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99952 * 270.00380 * 4 3 2 16 16 C 1.53042 * 109.45902 * 240.02729 * 15 4 3 17 17 C 1.53199 * 109.31096 * 178.60022 * 16 15 4 18 18 N 1.46927 * 108.76208 * 54.65405 * 17 16 15 19 19 C 1.36937 * 120.62941 * 126.40545 * 18 17 16 20 20 H 1.07999 * 120.00364 * 331.82725 * 19 18 17 21 21 C 1.38812 * 120.00029 * 151.82209 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.07414 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.06976 * 21 19 18 24 24 H 1.48499 * 109.46901 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46970 * 120.00219 * 23 21 19 26 26 H 1.48503 * 109.47248 * 240.00409 * 23 21 19 27 27 C 1.46923 * 118.73981 * 306.37949 * 18 17 16 28 28 C 1.53041 * 109.46035 * 119.96999 * 15 4 3 29 29 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46534 * 299.99672 * 1 2 3 31 31 H 1.08993 * 109.47118 * 59.99517 * 1 2 3 32 32 H 1.09004 * 109.47184 * 240.00399 * 2 1 3 33 33 H 1.08998 * 109.47418 * 120.00855 * 2 1 3 34 34 H 1.09004 * 109.47196 * 60.00258 * 3 2 1 35 35 H 1.08998 * 109.47600 * 300.00744 * 3 2 1 36 36 H 1.08998 * 109.46887 * 299.99557 * 7 5 4 37 37 H 1.08999 * 109.47323 * 59.99877 * 7 5 4 38 38 H 1.09009 * 109.46801 * 299.99940 * 8 7 5 39 39 H 1.08999 * 109.47122 * 59.99860 * 8 7 5 40 40 H 1.08009 * 126.75059 * 0.04567 * 10 9 8 41 41 H 1.08999 * 109.45904 * 359.97438 * 15 4 3 42 42 H 1.09000 * 109.49566 * 298.56424 * 16 15 4 43 43 H 1.09000 * 109.49633 * 58.66467 * 16 15 4 44 44 H 1.08996 * 109.59525 * 294.86902 * 17 16 15 45 45 H 1.08991 * 109.69883 * 174.50346 * 17 16 15 46 46 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58934 * 293.82483 * 27 18 17 48 48 H 1.09008 * 109.70482 * 173.46950 * 27 18 17 49 49 H 1.08998 * 109.49658 * 301.33421 * 28 15 4 50 50 H 1.09000 * 109.49531 * 61.40198 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1680 6 8 5.3912 1.4432 -1.1686 7 6 3.4244 1.4434 -2.4729 8 6 4.4182 1.4442 -3.6362 9 6 3.6641 1.4456 -4.9409 10 6 3.1806 0.3678 -5.6016 11 7 2.5846 0.8341 -6.7046 12 7 2.6987 2.1152 -6.7296 13 7 3.3395 2.5241 -5.6908 14 1 3.5526 3.4469 -5.4814 15 6 4.2381 1.4422 1.2678 16 6 5.1174 2.6922 1.3488 17 6 5.8556 2.7063 2.6911 18 7 6.5892 1.4420 2.8403 19 6 7.9308 1.4421 3.1143 20 1 8.5482 2.2668 2.7901 21 6 8.4974 0.3822 3.8088 22 7 7.7308 -0.4446 4.4879 23 14 10.3480 0.1291 3.7796 24 1 10.9793 1.1873 2.9509 25 1 10.8795 0.2024 5.1643 26 1 10.6564 -1.2033 3.2009 27 6 5.8558 0.1778 2.6905 28 6 5.1174 0.1922 1.3483 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 2.7975 0.5537 -2.5307 37 1 2.7980 2.3336 -2.5300 38 1 5.0449 2.3342 -3.5781 39 1 5.0449 0.5542 -3.5792 40 1 3.2585 -0.6655 -5.2968 41 1 3.5300 1.4425 2.0964 42 1 5.8422 2.6805 0.5348 43 1 4.4930 3.5820 1.2679 44 1 5.1357 2.8091 3.5031 45 1 6.5564 3.5406 2.7163 46 1 8.1267 -1.1855 4.9729 47 1 5.1360 0.0744 3.5024 48 1 6.5553 -0.6579 2.7137 49 1 4.4930 -0.6976 1.2670 50 1 5.8419 0.2040 0.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752439487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:52 Heat of formation + Delta-G solvation = 68.550599 kcal Electronic energy + Delta-G solvation = -29944.920194 eV Core-core repulsion = 26009.564883 eV Total energy + Delta-G solvation = -3935.355311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.60197 -40.29781 -37.24792 -36.08994 -34.74086 -33.53831 -33.30077 -32.05450 -30.56736 -29.91728 -29.31738 -26.32479 -25.85678 -24.37160 -23.26539 -22.42270 -22.25978 -21.73697 -21.63788 -19.56717 -18.79861 -18.43872 -17.09226 -16.64357 -16.24798 -15.94428 -15.79113 -14.87446 -14.72413 -14.65073 -14.49509 -14.04794 -13.81194 -13.53680 -13.39873 -13.21961 -12.98086 -12.71433 -12.58605 -12.51451 -12.33745 -12.05158 -11.85233 -11.67391 -11.53267 -11.41042 -11.14720 -11.11957 -10.98285 -10.88867 -10.85273 -10.69690 -10.29069 -10.13619 -10.04473 -9.70674 -9.58780 -9.48603 -9.20574 -8.51832 -8.29944 -6.63372 -5.75585 -3.16993 1.22052 2.24614 2.41002 2.72156 3.06641 3.40211 3.47905 3.50850 4.05149 4.32624 4.53477 4.54540 4.61530 4.65075 4.72022 4.81117 4.92565 5.07363 5.10009 5.18121 5.22626 5.35375 5.40139 5.46073 5.50248 5.60344 5.61848 5.66771 5.68454 5.80589 5.83820 5.84212 5.86235 6.07479 6.14824 6.31368 6.35646 6.49587 6.52199 6.59834 6.74177 6.81735 7.00909 7.09103 7.38933 7.58190 7.71378 7.84128 8.13377 8.33771 8.49190 9.25228 9.88608 10.44930 11.33254 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002877 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.951757 B = 9729.211693 C =10955.701825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.108 3.892 4 N -0.609 5.609 5 C 0.510 3.490 6 O -0.520 6.520 7 C -0.137 4.137 8 C -0.035 4.035 9 C -0.002 4.002 10 C -0.047 4.047 11 N -0.267 5.267 12 N -0.086 5.086 13 N -0.390 5.390 14 H 0.447 0.553 15 C 0.160 3.840 16 C -0.146 4.146 17 C 0.150 3.850 18 N -0.590 5.590 19 C -0.246 4.246 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.176 3.824 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.191 0.809 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.252 0.748 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.043 0.957 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 4.130 -13.965 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.016 4.016 4 N -0.342 5.342 5 C 0.297 3.703 6 O -0.396 6.396 7 C -0.178 4.178 8 C -0.075 4.075 9 C -0.136 4.136 10 C -0.204 4.204 11 N -0.134 5.134 12 N -0.066 5.066 13 N -0.111 5.111 14 H 0.293 0.707 15 C 0.058 3.942 16 C -0.186 4.186 17 C 0.023 3.977 18 N -0.312 5.312 19 C -0.376 4.376 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.049 3.951 28 C -0.192 4.192 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.208 0.792 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.106 0.894 49 H 0.062 0.938 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.344 4.289 -15.214 22.030 hybrid contribution 1.336 0.030 1.246 1.827 sum -14.008 4.319 -13.968 20.248 Atomic orbital electron populations 1.21706 0.95247 1.02022 1.01775 1.21995 0.95932 0.97260 1.03136 1.21665 0.80120 0.96906 1.02898 1.48341 1.06060 1.73107 1.06659 1.20348 0.88101 0.76840 0.84991 1.90746 1.13512 1.48345 1.87014 1.21742 0.99041 1.04551 0.92420 1.19920 0.95834 1.06323 0.85408 1.22392 1.05333 0.87342 0.98583 1.23464 1.02654 1.00618 0.93679 1.75104 1.18121 1.00862 1.19273 1.78299 1.13754 1.07597 1.06947 1.45160 1.38595 1.11142 1.16207 0.70703 1.21128 0.93069 0.97270 0.82705 1.22442 0.99179 0.94983 1.01986 1.20837 0.94161 0.90339 0.92354 1.44024 1.05854 0.99398 1.81931 1.19217 0.83236 1.06507 1.28635 0.91762 1.25023 0.97777 0.99976 0.96962 1.70035 1.33850 1.18242 1.32845 0.86239 0.85642 0.77819 0.77199 1.20251 1.21815 1.21572 1.20721 0.94099 0.90558 0.89673 1.22616 0.98965 0.94355 1.03265 0.92429 0.92516 0.92798 0.91791 0.91052 0.90337 0.90890 0.88451 0.89368 0.89379 0.87585 0.79163 0.90711 0.89970 0.93792 0.96780 0.92699 0.93774 0.96730 0.89358 0.93840 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.20 6.26 -26.73 -0.17 -1.37 16 3 C 0.11 0.94 5.18 -4.04 -0.02 0.92 16 4 N -0.61 -7.57 2.42 -166.06 -0.40 -7.97 16 5 C 0.51 6.47 7.10 -10.99 -0.08 6.39 16 6 O -0.52 -8.85 12.22 5.56 0.07 -8.79 16 7 C -0.14 -1.09 4.23 -27.88 -0.12 -1.21 16 8 C -0.03 -0.27 5.07 -27.88 -0.14 -0.41 16 9 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 10 C -0.05 -0.43 11.99 -17.74 -0.21 -0.64 16 11 N -0.27 -3.14 12.41 30.23 0.38 -2.77 16 12 N -0.09 -0.93 13.38 60.35 0.81 -0.13 16 13 N -0.39 -2.97 6.98 33.54 0.23 -2.73 16 14 H 0.45 1.86 8.96 -190.40 -1.71 0.15 16 15 C 0.16 2.58 2.51 -67.89 -0.17 2.41 16 16 C -0.15 -2.59 5.27 -26.61 -0.14 -2.73 16 17 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 18 N -0.59 -14.91 2.99 -172.32 -0.52 -15.43 16 19 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 20 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 21 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 22 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 23 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 C 0.18 4.20 5.30 -3.71 -0.02 4.18 16 28 C -0.15 -2.95 5.27 -26.61 -0.14 -3.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.53 7.22 -51.93 -0.38 0.15 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 36 H 0.10 0.67 7.19 -51.93 -0.37 0.29 16 37 H 0.09 0.56 7.40 -51.93 -0.38 0.17 16 38 H 0.09 0.70 8.10 -51.92 -0.42 0.28 16 39 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.07 1.17 7.79 -51.93 -0.40 0.76 16 42 H 0.08 1.66 6.21 -51.93 -0.32 1.34 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 2.39 6.07 -51.92 -0.31 2.08 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 1.73 6.21 -51.93 -0.32 1.41 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -34.19 393.10 -9.11 -43.30 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -9.56 Total: -1.99 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.63 Total: -0.68 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 1.12 Total: -54.79 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.19 -9.11 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.850 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds