Wall clock time and date at job start Tue Mar 31 2020 19:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47267 * 2 1 4 4 N 1.46502 * 109.47389 * 180.02562 * 3 2 1 5 5 C 1.34771 * 120.00098 * 90.00048 * 4 3 2 6 6 O 1.21276 * 120.00236 * 179.97438 * 5 4 3 7 7 C 1.50706 * 119.99858 * 0.02562 * 5 4 3 8 8 C 1.53004 * 109.46949 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46822 * 180.02562 * 8 7 5 10 10 C 1.35347 * 126.91396 * 274.67861 * 9 8 7 11 11 N 1.33763 * 106.50088 * 179.91067 * 10 9 8 12 12 N 1.28640 * 108.88634 * 0.36725 * 11 10 9 13 13 N 1.28720 * 110.17292 * 359.77157 * 12 11 10 14 14 H 0.96999 * 125.86194 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99952 * 270.00380 * 4 3 2 16 16 C 1.53042 * 109.45902 * 240.02729 * 15 4 3 17 17 C 1.53199 * 109.31096 * 178.60022 * 16 15 4 18 18 N 1.46927 * 108.76208 * 54.65405 * 17 16 15 19 19 C 1.36937 * 120.62941 * 126.40545 * 18 17 16 20 20 H 1.07999 * 120.00364 * 331.82725 * 19 18 17 21 21 C 1.38812 * 120.00029 * 151.82209 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.07414 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.06976 * 21 19 18 24 24 H 1.48499 * 109.46901 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46970 * 120.00219 * 23 21 19 26 26 H 1.48503 * 109.47248 * 240.00409 * 23 21 19 27 27 C 1.46923 * 118.73981 * 306.37949 * 18 17 16 28 28 C 1.53041 * 109.46035 * 119.96999 * 15 4 3 29 29 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46534 * 299.99672 * 1 2 3 31 31 H 1.08993 * 109.47118 * 59.99517 * 1 2 3 32 32 H 1.09004 * 109.47184 * 240.00399 * 2 1 3 33 33 H 1.08998 * 109.47418 * 120.00855 * 2 1 3 34 34 H 1.09004 * 109.47196 * 60.00258 * 3 2 1 35 35 H 1.08998 * 109.47600 * 300.00744 * 3 2 1 36 36 H 1.08998 * 109.46887 * 299.99557 * 7 5 4 37 37 H 1.08999 * 109.47323 * 59.99877 * 7 5 4 38 38 H 1.09009 * 109.46801 * 299.99940 * 8 7 5 39 39 H 1.08999 * 109.47122 * 59.99860 * 8 7 5 40 40 H 1.08009 * 126.75059 * 0.04567 * 10 9 8 41 41 H 1.08999 * 109.45904 * 359.97438 * 15 4 3 42 42 H 1.09000 * 109.49566 * 298.56424 * 16 15 4 43 43 H 1.09000 * 109.49633 * 58.66467 * 16 15 4 44 44 H 1.08996 * 109.59525 * 294.86902 * 17 16 15 45 45 H 1.08991 * 109.69883 * 174.50346 * 17 16 15 46 46 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58934 * 293.82483 * 27 18 17 48 48 H 1.09008 * 109.70482 * 173.46950 * 27 18 17 49 49 H 1.08998 * 109.49658 * 301.33421 * 28 15 4 50 50 H 1.09000 * 109.49531 * 61.40198 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1680 6 8 5.3912 1.4432 -1.1686 7 6 3.4244 1.4434 -2.4729 8 6 4.4182 1.4442 -3.6362 9 6 3.6641 1.4456 -4.9409 10 6 3.1806 0.3678 -5.6016 11 7 2.5846 0.8341 -6.7046 12 7 2.6987 2.1152 -6.7296 13 7 3.3395 2.5241 -5.6908 14 1 3.5526 3.4469 -5.4814 15 6 4.2381 1.4422 1.2678 16 6 5.1174 2.6922 1.3488 17 6 5.8556 2.7063 2.6911 18 7 6.5892 1.4420 2.8403 19 6 7.9308 1.4421 3.1143 20 1 8.5482 2.2668 2.7901 21 6 8.4974 0.3822 3.8088 22 7 7.7308 -0.4446 4.4879 23 14 10.3480 0.1291 3.7796 24 1 10.9793 1.1873 2.9509 25 1 10.8795 0.2024 5.1643 26 1 10.6564 -1.2033 3.2009 27 6 5.8558 0.1778 2.6905 28 6 5.1174 0.1922 1.3483 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 2.7975 0.5537 -2.5307 37 1 2.7980 2.3336 -2.5300 38 1 5.0449 2.3342 -3.5781 39 1 5.0449 0.5542 -3.5792 40 1 3.2585 -0.6655 -5.2968 41 1 3.5300 1.4425 2.0964 42 1 5.8422 2.6805 0.5348 43 1 4.4930 3.5820 1.2679 44 1 5.1357 2.8091 3.5031 45 1 6.5564 3.5406 2.7163 46 1 8.1267 -1.1855 4.9729 47 1 5.1360 0.0744 3.5024 48 1 6.5553 -0.6579 2.7137 49 1 4.4930 -0.6976 1.2670 50 1 5.8419 0.2040 0.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752439487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:51 Heat of formation + Delta-G solvation = 46.487922 kcal Electronic energy + Delta-G solvation = -29945.876903 eV Core-core repulsion = 26009.564883 eV Total energy + Delta-G solvation = -3936.312021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.28640 -41.37383 -38.76394 -37.13659 -35.59820 -34.78032 -34.10622 -33.39190 -31.93457 -31.42344 -30.56927 -27.37832 -26.96643 -25.67116 -24.00735 -23.86296 -23.68106 -22.64566 -22.39661 -21.09819 -19.78678 -19.21912 -18.77283 -17.63055 -17.29740 -16.96278 -16.75622 -16.53617 -15.63954 -15.47930 -15.38628 -15.30655 -15.27960 -14.86302 -14.75609 -14.31870 -14.13573 -14.03875 -13.90262 -13.38986 -13.18954 -13.04598 -12.97681 -12.75056 -12.67790 -12.60069 -12.57161 -12.34614 -12.19396 -12.10129 -11.96979 -11.83016 -11.76517 -11.58372 -11.53531 -11.35098 -11.18093 -10.61984 -10.44816 -10.10982 -9.48782 -8.67758 -7.88433 -5.32605 0.56050 1.43474 1.45770 1.53534 1.56316 1.76505 1.84978 2.12168 2.50207 3.26349 3.35696 3.66126 3.69598 3.82460 3.94060 4.02523 4.05680 4.07638 4.17208 4.23039 4.33240 4.38603 4.46850 4.48750 4.55870 4.61029 4.64278 4.71041 4.77668 4.85965 4.90155 4.98275 5.01327 5.01885 5.07164 5.12232 5.19342 5.21703 5.28144 5.32139 5.46248 5.51354 5.52867 5.64175 5.70408 5.83857 5.98709 6.39201 6.61040 7.14833 7.36432 7.43452 7.86414 8.37073 9.18079 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002877 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.951757 B = 9729.211693 C =10955.701825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.105 3.895 4 N -0.607 5.607 5 C 0.505 3.495 6 O -0.569 6.569 7 C -0.124 4.124 8 C -0.027 4.027 9 C 0.011 3.989 10 C -0.053 4.053 11 N -0.301 5.301 12 N -0.110 5.110 13 N -0.374 5.374 14 H 0.462 0.538 15 C 0.169 3.831 16 C -0.130 4.130 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.060 0.940 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.184 3.816 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.211 0.789 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.001 0.999 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 5.188 -15.164 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.017 4.017 4 N -0.338 5.338 5 C 0.294 3.706 6 O -0.448 6.448 7 C -0.164 4.164 8 C -0.067 4.067 9 C -0.124 4.124 10 C -0.211 4.211 11 N -0.168 5.168 12 N -0.090 5.090 13 N -0.097 5.097 14 H 0.310 0.690 15 C 0.066 3.934 16 C -0.170 4.170 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.078 0.922 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.057 3.943 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.228 0.772 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.019 0.981 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.265 5.391 -16.446 24.446 hybrid contribution 1.907 -0.273 1.652 2.538 sum -15.358 5.118 -14.794 21.929 Atomic orbital electron populations 1.21669 0.93747 1.02258 1.02635 1.21951 0.97142 0.96799 1.02177 1.21952 0.77329 0.97539 1.04911 1.48280 1.07613 1.72772 1.05146 1.21158 0.87752 0.75351 0.86290 1.90743 1.15928 1.50413 1.87748 1.21717 0.98725 1.06775 0.89220 1.19805 0.95654 1.05968 0.85234 1.22299 1.04681 0.87087 0.98293 1.23897 1.02185 1.01946 0.93075 1.75081 1.19543 1.01420 1.20731 1.78250 1.15013 1.07577 1.08118 1.45175 1.37335 1.11975 1.15245 0.68959 1.20757 0.92876 0.94515 0.85271 1.22212 0.98954 0.97194 0.98654 1.20998 0.94181 0.88343 0.94530 1.44273 1.05611 1.01139 1.82256 1.19481 0.84832 1.06486 1.28186 0.92234 1.25745 1.01797 0.99956 0.97043 1.70171 1.35387 1.18667 1.33738 0.85265 0.80876 0.77548 0.77140 1.19441 1.21512 1.21694 1.20494 0.93053 0.89019 0.91708 1.22308 0.98752 0.97084 0.99267 0.92591 0.92314 0.91263 0.91568 0.93322 0.89542 0.87689 0.86512 0.86541 0.89438 0.88493 0.77247 0.89561 0.92379 0.90616 0.96061 0.93178 0.94100 0.98066 0.93320 0.92462 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -1.93 6.26 30.59 0.19 -1.74 16 3 C 0.10 1.40 5.18 86.38 0.45 1.85 16 4 N -0.61 -13.45 2.42 -797.69 -1.93 -15.38 16 5 C 0.51 11.63 7.10 87.66 0.62 12.25 16 6 O -0.57 -19.02 12.22 -3.02 -0.04 -19.05 16 7 C -0.12 -1.52 4.23 29.85 0.13 -1.39 16 8 C -0.03 -0.35 5.07 29.85 0.15 -0.20 16 9 C 0.01 0.15 6.56 41.35 0.27 0.42 16 10 C -0.05 -0.86 11.99 83.73 1.00 0.15 16 11 N -0.30 -6.69 12.41 -58.26 -0.72 -7.41 16 12 N -0.11 -2.22 13.38 37.02 0.50 -1.72 16 13 N -0.37 -4.80 6.98 -47.79 -0.33 -5.14 16 14 H 0.46 2.64 8.96 -219.96 -1.97 0.67 16 15 C 0.17 5.23 2.51 45.02 0.11 5.34 16 16 C -0.13 -4.47 5.27 30.68 0.16 -4.31 16 17 C 0.15 6.11 6.52 86.36 0.56 6.68 16 18 N -0.61 -31.61 2.99 -699.10 -2.09 -33.70 16 19 C -0.26 -14.87 9.58 84.03 0.81 -14.07 16 20 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16 21 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 22 N -0.93 -56.18 11.19 21.65 0.24 -55.93 16 23 Si 0.96 46.34 29.59 68.60 2.03 48.37 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.18 9.07 5.30 86.36 0.46 9.53 16 28 C -0.13 -5.26 5.27 30.67 0.16 -5.09 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.87 7.22 -2.39 -0.02 0.85 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.08 7.92 -2.39 -0.02 1.07 16 35 H 0.11 0.80 6.44 -2.39 -0.02 0.78 16 36 H 0.12 1.07 7.19 -2.39 -0.02 1.05 16 37 H 0.12 0.84 7.40 -2.39 -0.02 0.83 16 38 H 0.09 1.20 8.10 -2.38 -0.02 1.18 16 39 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.09 2.51 7.79 -2.39 -0.02 2.49 16 42 H 0.06 2.32 6.21 -2.39 -0.01 2.31 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 2.10 7.93 -2.39 -0.02 2.09 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.05 2.77 6.07 -2.38 -0.01 2.75 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.05 2.41 6.21 -2.39 -0.01 2.39 16 Total: -1.00 -77.76 393.10 2.83 -74.93 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -1.03 Total: 8.81 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.21 Total: 6.23 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.34 Total: -119.29 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.76 2.83 -74.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752439487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.420 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds