Wall clock time and date at job start Tue Mar 31 2020 19:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47258 * 2 1 4 4 N 1.46492 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59929 * 124.99819 * 4 3 2 6 6 C 1.36590 * 106.84355 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77117 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00311 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00151 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47352 * 185.08175 * 12 11 10 14 14 H 1.09002 * 109.87510 * 55.66291 * 13 12 11 15 15 C 1.54323 * 109.88438 * 294.64791 * 13 12 11 16 16 C 1.55160 * 102.94397 * 218.38674 * 15 13 12 17 17 C 1.54907 * 101.57869 * 35.50064 * 16 15 13 18 18 N 1.47028 * 109.88398 * 176.67663 * 13 12 11 19 19 C 1.36930 * 125.64972 * 298.31623 * 18 13 12 20 20 H 1.08000 * 120.00276 * 346.80820 * 19 18 13 21 21 C 1.38813 * 119.99950 * 166.81206 * 19 18 13 22 22 N 1.31623 * 120.00107 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47298 * 90.00121 * 23 21 19 25 25 H 1.48506 * 109.46709 * 209.99625 * 23 21 19 26 26 H 1.48498 * 109.47364 * 329.99416 * 23 21 19 27 27 N 1.34400 * 108.45824 * 0.24508 * 6 5 4 28 28 N 1.28760 * 109.52172 * 359.58548 * 27 6 5 29 29 H 1.09000 * 109.46945 * 60.00245 * 1 2 3 30 30 H 1.08997 * 109.46734 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47080 * 300.00027 * 1 2 3 32 32 H 1.08997 * 109.47500 * 239.99639 * 2 1 3 33 33 H 1.09000 * 109.46945 * 119.99754 * 2 1 3 34 34 H 1.08997 * 109.47160 * 59.99431 * 3 2 1 35 35 H 1.09000 * 109.46942 * 299.99756 * 3 2 1 36 36 H 1.08008 * 126.57913 * 0.02562 * 5 4 3 37 37 H 0.97001 * 119.99780 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47102 * 299.99624 * 10 9 7 39 39 H 1.08998 * 109.47116 * 60.00051 * 10 9 7 40 40 H 1.09002 * 109.47339 * 299.99674 * 11 10 9 41 41 H 1.08998 * 109.47353 * 60.00056 * 11 10 9 42 42 H 1.09000 * 109.47375 * 305.08453 * 12 11 10 43 43 H 1.09000 * 109.47175 * 65.08233 * 12 11 10 44 44 H 1.08998 * 110.71968 * 336.75017 * 15 13 12 45 45 H 1.08999 * 110.71803 * 100.02492 * 15 13 12 46 46 H 1.08997 * 111.00184 * 153.57353 * 16 15 13 47 47 H 1.08996 * 111.00157 * 277.39050 * 16 15 13 48 48 H 1.09001 * 110.36781 * 81.82606 * 17 16 15 49 49 H 1.08998 * 110.36845 * 204.14788 * 17 16 15 50 50 H 0.96992 * 120.00180 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3084 2.0635 -0.8874 6 6 5.5940 1.7982 -0.5101 7 6 6.8099 2.2766 -1.1950 8 8 6.7147 2.9723 -2.1877 9 7 8.0264 1.9426 -0.7204 10 6 9.2338 2.4182 -1.4002 11 6 10.4710 1.9001 -0.6642 12 6 11.7320 2.3973 -1.3738 13 6 12.9659 1.7774 -0.7151 14 1 12.8811 0.6907 -0.7183 15 6 13.1000 2.2891 0.7346 16 6 14.6321 2.4706 0.8989 17 6 15.0418 2.9504 -0.5159 18 7 14.1782 2.1863 -1.4396 19 6 14.4577 1.9051 -2.7503 20 1 13.8738 1.1675 -3.2807 21 6 15.4916 2.5680 -3.3971 22 7 16.2030 3.4673 -2.7508 23 14 15.8724 2.1849 -5.1853 24 1 15.0798 3.0824 -6.0636 25 1 17.3203 2.3961 -5.4392 26 1 15.5202 0.7716 -5.4747 27 7 5.5641 1.0226 0.5871 28 7 4.3412 0.7962 0.9207 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.9954 2.6569 -1.7339 37 1 8.1024 1.3873 0.0713 38 1 9.2416 2.0508 -2.4264 39 1 9.2429 3.5082 -1.4044 40 1 10.4635 2.2671 0.3621 41 1 10.4616 0.8102 -0.6604 42 1 11.6964 2.1073 -2.4239 43 1 11.7870 3.4833 -1.2985 44 1 12.5835 3.2411 0.8568 45 1 12.7213 1.5502 1.4409 46 1 14.8575 3.2286 1.6490 47 1 15.1134 1.5243 1.1457 48 1 14.8594 4.0199 -0.6214 49 1 16.0911 2.7233 -0.7044 50 1 16.9257 3.9302 -3.2027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753036803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:05 Heat of formation + Delta-G solvation = 62.340008 kcal Electronic energy + Delta-G solvation = -27764.392710 eV Core-core repulsion = 23828.768088 eV Total energy + Delta-G solvation = -3935.624623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54208 -39.44482 -37.76301 -36.51538 -35.48064 -33.24134 -32.82396 -32.11440 -31.14014 -29.34250 -28.21314 -27.41339 -25.00650 -24.30540 -23.48592 -22.86599 -21.99953 -21.44166 -20.44405 -20.05414 -19.08891 -18.33792 -16.76587 -16.65910 -16.45571 -16.05293 -15.76660 -15.38119 -15.05130 -14.95737 -14.46564 -14.27786 -14.01515 -13.93721 -13.68594 -13.29853 -12.82971 -12.73368 -12.54671 -12.26444 -12.15432 -11.98395 -11.85864 -11.72337 -11.63924 -11.45991 -11.36123 -10.96742 -10.78447 -10.73614 -10.68665 -10.48523 -10.23377 -10.02451 -9.92100 -9.70176 -9.64006 -9.54666 -9.53148 -9.04165 -8.52130 -6.70842 -5.67200 -3.01660 0.78723 1.45429 1.60772 3.06599 3.15521 3.44005 3.49399 3.50687 3.74686 3.90362 4.06088 4.33346 4.45063 4.54240 4.55026 4.64232 4.69902 4.87994 5.01718 5.08965 5.26316 5.30748 5.32460 5.43451 5.49626 5.51469 5.53272 5.67472 5.69943 5.80281 5.92801 5.95637 6.04247 6.09990 6.19937 6.34869 6.42790 6.43886 6.50694 6.64310 6.77659 6.80181 7.03221 7.25018 7.36000 7.62613 7.66256 7.69366 7.87449 8.09266 8.36388 9.27379 9.89362 10.59032 11.45048 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.001728 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.585163 B =16198.247634 C =17069.397894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.362 5.362 5 C 0.093 3.907 6 C -0.100 4.100 7 C 0.601 3.399 8 O -0.540 6.540 9 N -0.712 5.712 10 C 0.119 3.881 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.124 4.124 16 C -0.150 4.150 17 C 0.171 3.829 18 N -0.597 5.597 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.205 5.205 28 N -0.064 5.064 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.205 0.795 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.071 0.929 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.260 -4.115 8.321 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.147 5.147 5 C -0.064 4.064 6 C -0.239 4.239 7 C 0.384 3.616 8 O -0.417 6.417 9 N -0.362 5.362 10 C -0.004 4.004 11 C -0.167 4.167 12 C -0.162 4.162 13 C 0.054 3.946 14 H 0.049 0.951 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.047 3.953 18 N -0.321 5.321 19 C -0.352 4.352 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.078 5.078 28 N -0.044 5.044 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.222 0.778 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -30.101 -4.421 8.680 31.638 hybrid contribution -0.026 0.303 -1.513 1.544 sum -30.128 -4.118 7.166 31.241 Atomic orbital electron populations 1.21706 0.93757 1.02970 1.02379 1.21840 0.97041 0.94481 1.04310 1.22183 0.72423 1.00198 1.05254 1.50573 1.08882 1.35178 1.20018 1.23408 0.90172 0.96948 0.95903 1.21538 0.94682 1.08287 0.99426 1.16761 0.81854 0.79830 0.83115 1.90823 1.86687 1.38590 1.25590 1.45901 1.05314 1.53130 1.31846 1.21573 0.82398 0.99723 0.96733 1.21845 0.93841 1.01134 0.99837 1.22023 0.92978 1.00826 1.00336 1.20923 0.87254 0.96029 0.90361 0.95145 1.22592 0.97020 1.00086 0.96538 1.23006 0.95471 1.00283 1.00128 1.21480 0.96351 0.93816 0.83683 1.44622 1.15621 1.63442 1.08435 1.18975 1.13934 1.16634 0.85664 0.90769 1.24867 0.99468 0.98011 0.98001 1.69936 1.22892 1.28543 1.35267 0.86178 0.77224 0.77737 0.84998 1.21591 1.21768 1.20700 1.74646 1.12978 1.10018 1.10205 1.81972 0.93335 1.17300 1.11797 0.92180 0.91562 0.92048 0.90978 0.89972 0.88241 0.87623 0.77846 0.75725 0.91114 0.91183 0.91568 0.91612 0.91687 0.92184 0.92034 0.92592 0.92598 0.92512 0.95951 0.91043 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.28 9.91 37.16 0.37 0.09 16 2 C -0.14 -0.47 6.14 -26.73 -0.16 -0.64 16 3 C 0.12 0.39 6.54 -4.04 -0.03 0.36 16 4 N -0.36 -2.69 3.69 -61.07 -0.23 -2.92 16 5 C 0.09 0.76 11.27 -16.84 -0.19 0.57 16 6 C -0.10 -1.14 6.99 -83.55 -0.58 -1.72 16 7 C 0.60 8.04 7.82 -12.47 -0.10 7.94 16 8 O -0.54 -8.67 16.86 5.29 0.09 -8.58 16 9 N -0.71 -8.84 5.55 -61.35 -0.34 -9.18 16 10 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 11 C -0.13 -1.75 5.08 -26.73 -0.14 -1.88 16 12 C -0.12 -2.18 4.69 -26.73 -0.13 -2.31 16 13 C 0.16 3.28 3.18 -66.95 -0.21 3.07 16 14 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.12 -2.17 5.61 -24.89 -0.14 -2.31 16 16 C -0.15 -2.88 7.09 -24.58 -0.17 -3.06 16 17 C 0.17 4.21 5.46 -2.35 -0.01 4.20 16 18 N -0.60 -15.17 3.14 -162.32 -0.51 -15.68 16 19 C -0.22 -6.22 9.75 -15.06 -0.15 -6.36 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 22 N -0.92 -27.23 10.54 55.49 0.59 -26.64 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 N -0.20 -2.44 12.04 32.84 0.40 -2.05 16 28 N -0.06 -0.68 13.65 60.35 0.82 0.14 16 29 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.11 0.08 8.08 -51.93 -0.42 -0.34 16 36 H 0.20 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.41 4.45 8.16 -40.82 -0.33 4.12 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.28 7.89 -51.93 -0.41 0.87 16 43 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 44 H 0.06 1.03 7.79 -51.93 -0.40 0.62 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 49 H 0.07 1.96 6.83 -51.93 -0.35 1.60 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 409.55 15.07 6.17 6.17 Total: -1.00 -34.20 409.55 -8.41 -42.61 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.62 Total: -0.45 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.76 Total: -0.75 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.73 Total: -56.33 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.20 -8.41 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753036803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.949 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds