Wall clock time and date at job start Tue Mar 31 2020 19:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47258 * 2 1 4 4 N 1.46492 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59929 * 124.99819 * 4 3 2 6 6 C 1.36590 * 106.84355 * 180.02562 * 5 4 3 7 7 C 1.47523 * 125.77117 * 179.97438 * 6 5 4 8 8 O 1.21590 * 120.00311 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00151 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.47352 * 185.08175 * 12 11 10 14 14 H 1.09002 * 109.87510 * 55.66291 * 13 12 11 15 15 C 1.54323 * 109.88438 * 294.64791 * 13 12 11 16 16 C 1.55160 * 102.94397 * 218.38674 * 15 13 12 17 17 C 1.54907 * 101.57869 * 35.50064 * 16 15 13 18 18 N 1.47028 * 109.88398 * 176.67663 * 13 12 11 19 19 C 1.36930 * 125.64972 * 298.31623 * 18 13 12 20 20 H 1.08000 * 120.00276 * 346.80820 * 19 18 13 21 21 C 1.38813 * 119.99950 * 166.81206 * 19 18 13 22 22 N 1.31623 * 120.00107 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47298 * 90.00121 * 23 21 19 25 25 H 1.48506 * 109.46709 * 209.99625 * 23 21 19 26 26 H 1.48498 * 109.47364 * 329.99416 * 23 21 19 27 27 N 1.34400 * 108.45824 * 0.24508 * 6 5 4 28 28 N 1.28760 * 109.52172 * 359.58548 * 27 6 5 29 29 H 1.09000 * 109.46945 * 60.00245 * 1 2 3 30 30 H 1.08997 * 109.46734 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47080 * 300.00027 * 1 2 3 32 32 H 1.08997 * 109.47500 * 239.99639 * 2 1 3 33 33 H 1.09000 * 109.46945 * 119.99754 * 2 1 3 34 34 H 1.08997 * 109.47160 * 59.99431 * 3 2 1 35 35 H 1.09000 * 109.46942 * 299.99756 * 3 2 1 36 36 H 1.08008 * 126.57913 * 0.02562 * 5 4 3 37 37 H 0.97001 * 119.99780 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47102 * 299.99624 * 10 9 7 39 39 H 1.08998 * 109.47116 * 60.00051 * 10 9 7 40 40 H 1.09002 * 109.47339 * 299.99674 * 11 10 9 41 41 H 1.08998 * 109.47353 * 60.00056 * 11 10 9 42 42 H 1.09000 * 109.47375 * 305.08453 * 12 11 10 43 43 H 1.09000 * 109.47175 * 65.08233 * 12 11 10 44 44 H 1.08998 * 110.71968 * 336.75017 * 15 13 12 45 45 H 1.08999 * 110.71803 * 100.02492 * 15 13 12 46 46 H 1.08997 * 111.00184 * 153.57353 * 16 15 13 47 47 H 1.08996 * 111.00157 * 277.39050 * 16 15 13 48 48 H 1.09001 * 110.36781 * 81.82606 * 17 16 15 49 49 H 1.08998 * 110.36845 * 204.14788 * 17 16 15 50 50 H 0.96992 * 120.00180 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3084 2.0635 -0.8874 6 6 5.5940 1.7982 -0.5101 7 6 6.8099 2.2766 -1.1950 8 8 6.7147 2.9723 -2.1877 9 7 8.0264 1.9426 -0.7204 10 6 9.2338 2.4182 -1.4002 11 6 10.4710 1.9001 -0.6642 12 6 11.7320 2.3973 -1.3738 13 6 12.9659 1.7774 -0.7151 14 1 12.8811 0.6907 -0.7183 15 6 13.1000 2.2891 0.7346 16 6 14.6321 2.4706 0.8989 17 6 15.0418 2.9504 -0.5159 18 7 14.1782 2.1863 -1.4396 19 6 14.4577 1.9051 -2.7503 20 1 13.8738 1.1675 -3.2807 21 6 15.4916 2.5680 -3.3971 22 7 16.2030 3.4673 -2.7508 23 14 15.8724 2.1849 -5.1853 24 1 15.0798 3.0824 -6.0636 25 1 17.3203 2.3961 -5.4392 26 1 15.5202 0.7716 -5.4747 27 7 5.5641 1.0226 0.5871 28 7 4.3412 0.7962 0.9207 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.9954 2.6569 -1.7339 37 1 8.1024 1.3873 0.0713 38 1 9.2416 2.0508 -2.4264 39 1 9.2429 3.5082 -1.4044 40 1 10.4635 2.2671 0.3621 41 1 10.4616 0.8102 -0.6604 42 1 11.6964 2.1073 -2.4239 43 1 11.7870 3.4833 -1.2985 44 1 12.5835 3.2411 0.8568 45 1 12.7213 1.5502 1.4409 46 1 14.8575 3.2286 1.6490 47 1 15.1134 1.5243 1.1457 48 1 14.8594 4.0199 -0.6214 49 1 16.0911 2.7233 -0.7044 50 1 16.9257 3.9302 -3.2027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753036803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:04 Heat of formation + Delta-G solvation = 39.496075 kcal Electronic energy + Delta-G solvation = -27765.383298 eV Core-core repulsion = 23828.768088 eV Total energy + Delta-G solvation = -3936.615210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.25588 -40.49223 -39.42160 -36.93218 -36.69564 -34.68143 -33.80952 -33.45206 -31.96560 -31.21205 -29.52052 -27.95135 -26.65202 -25.88889 -24.31735 -23.60168 -22.66142 -22.51005 -21.83736 -21.34408 -20.66676 -19.12629 -18.66346 -17.28168 -17.25348 -17.12126 -16.93008 -16.59167 -16.06308 -15.97088 -15.70411 -15.65252 -15.36027 -14.93669 -14.47147 -14.27679 -13.89015 -13.67964 -13.65458 -13.54939 -13.22535 -13.09714 -12.97909 -12.96308 -12.73154 -12.66581 -12.51336 -12.25329 -12.23509 -11.98178 -11.81955 -11.75541 -11.66485 -11.52219 -11.32053 -11.28845 -11.24489 -11.09927 -10.64158 -10.45555 -10.05953 -8.76298 -7.82565 -5.17914 0.13157 0.58685 1.08650 1.45527 1.47222 1.55425 2.10382 2.20687 2.51777 3.15888 3.33915 3.36097 3.70710 3.79225 3.82636 3.93440 3.98290 4.03240 4.15385 4.18288 4.22423 4.28271 4.37268 4.45798 4.46424 4.52164 4.65217 4.69599 4.79767 4.84016 4.84316 4.87405 5.01088 5.06176 5.11390 5.15507 5.17120 5.25682 5.31981 5.34209 5.39437 5.48576 5.53082 5.54509 5.70211 5.72774 5.81755 6.29688 6.40344 6.88186 7.10995 7.14778 7.84516 8.52355 9.28819 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.001728 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.585163 B =16198.247634 C =17069.397894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.110 3.890 6 C -0.126 4.126 7 C 0.601 3.399 8 O -0.573 6.573 9 N -0.705 5.705 10 C 0.126 3.874 11 C -0.110 4.110 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.034 0.966 15 C -0.112 4.112 16 C -0.137 4.137 17 C 0.173 3.827 18 N -0.619 5.619 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.971 3.029 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.269 1.269 27 N -0.223 5.223 28 N -0.086 5.086 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.236 0.764 37 H 0.416 0.584 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.063 0.937 48 H -0.008 1.008 49 H 0.032 0.968 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.205 -4.762 9.271 34.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.049 4.049 6 C -0.265 4.265 7 C 0.386 3.614 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.002 3.998 11 C -0.148 4.148 12 C -0.151 4.151 13 C 0.045 3.955 14 H 0.052 0.948 15 C -0.150 4.150 16 C -0.176 4.176 17 C 0.048 3.952 18 N -0.344 5.344 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.800 3.200 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.194 1.194 27 N -0.097 5.097 28 N -0.066 5.066 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.253 0.747 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.010 0.990 49 H 0.051 0.949 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -33.102 -5.116 9.683 34.866 hybrid contribution 0.771 0.474 -1.793 2.009 sum -32.330 -4.642 7.889 33.601 Atomic orbital electron populations 1.21681 0.92325 1.03058 1.03320 1.21784 0.98155 0.94390 1.02972 1.22663 0.69907 1.00529 1.07735 1.50858 1.10124 1.33588 1.18689 1.23866 0.89179 0.95840 0.95973 1.21412 0.94976 1.09918 1.00243 1.17009 0.82499 0.79173 0.82684 1.90799 1.87206 1.40159 1.27047 1.45781 1.04822 1.52998 1.31935 1.21354 0.83023 0.99154 0.96239 1.21644 0.91330 1.01753 1.00108 1.21807 0.94357 0.99672 0.99258 1.21210 0.86071 0.96268 0.91963 0.94849 1.22588 0.95678 1.01670 0.95029 1.22879 0.96811 1.01065 0.96812 1.21286 0.94431 0.92292 0.87175 1.44931 1.17994 1.63313 1.08155 1.19310 1.13387 1.16153 0.87047 0.90582 1.25648 0.99893 0.98537 1.01878 1.70150 1.23423 1.29851 1.36497 0.85183 0.76499 0.77967 0.80364 1.21561 1.22125 1.19420 1.74609 1.13841 1.10576 1.10674 1.81894 0.93412 1.18321 1.13005 0.90948 0.91967 0.91370 0.91894 0.91796 0.86714 0.84210 0.74778 0.74681 0.92447 0.92048 0.89445 0.90318 0.94158 0.93757 0.90982 0.88745 0.90090 0.91872 0.99041 0.94913 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.22 9.91 71.98 0.71 0.49 16 2 C -0.13 -0.69 6.14 30.60 0.19 -0.50 16 3 C 0.11 0.40 6.54 86.38 0.56 0.96 16 4 N -0.35 -4.43 3.69 -347.11 -1.28 -5.71 16 5 C 0.11 1.56 11.27 83.85 0.95 2.51 16 6 C -0.13 -2.71 6.99 40.82 0.29 -2.42 16 7 C 0.60 15.63 7.82 86.69 0.68 16.31 16 8 O -0.57 -18.14 16.86 -4.00 -0.07 -18.21 16 9 N -0.70 -16.76 5.55 -466.28 -2.59 -19.35 16 10 C 0.13 3.32 5.67 86.38 0.49 3.81 16 11 C -0.11 -2.78 5.08 30.59 0.16 -2.63 16 12 C -0.11 -3.94 4.69 30.59 0.14 -3.79 16 13 C 0.15 5.96 3.18 45.34 0.14 6.10 16 14 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 15 C -0.11 -3.57 5.61 31.78 0.18 -3.39 16 16 C -0.14 -5.03 7.09 31.99 0.23 -4.81 16 17 C 0.17 8.73 5.46 86.79 0.47 9.20 16 18 N -0.62 -31.98 3.14 -667.45 -2.09 -34.07 16 19 C -0.23 -13.04 9.75 84.03 0.82 -12.22 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 21 C -0.07 -3.88 5.47 84.86 0.46 -3.42 16 22 N -0.95 -58.53 10.54 21.65 0.23 -58.31 16 23 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 N -0.22 -5.12 12.04 -50.00 -0.60 -5.72 16 28 N -0.09 -1.74 13.65 37.02 0.51 -1.23 16 29 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.14 -0.39 8.08 -2.39 -0.02 -0.41 16 36 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.42 8.43 8.16 -92.71 -0.76 7.68 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.90 7.57 -2.39 -0.02 1.88 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.60 7.89 -2.39 -0.02 1.59 16 43 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 44 H 0.07 2.17 7.79 -2.39 -0.02 2.15 16 45 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 48 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 49 H 0.03 1.87 6.83 -2.39 -0.02 1.85 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -78.01 409.55 2.76 -75.24 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.17 Total: 12.08 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.47 Total: 6.20 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -5.83 Total: -124.40 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.07 Total: -18.21 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.01 2.76 -75.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753036803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.739 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds