Wall clock time and date at job start Tue Mar 31 2020 19:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46973 * 2 1 4 4 C 1.53002 * 109.47166 * 240.00053 * 2 1 3 5 5 N 1.46499 * 109.47415 * 120.00116 * 2 1 3 6 6 C 1.34577 * 125.74835 * 74.99605 * 5 2 1 7 7 N 1.30868 * 107.62823 * 180.02562 * 6 5 2 8 8 C 1.34556 * 107.26528 * 0.02562 * 7 6 5 9 9 C 1.47876 * 126.04586 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99597 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00076 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00006 * 185.26814 * 11 9 8 13 13 C 1.53003 * 109.47089 * 173.96438 * 12 11 9 14 14 C 1.53008 * 109.46915 * 53.96849 * 12 11 9 15 15 N 1.46500 * 109.47276 * 59.99576 * 14 12 11 16 16 C 1.36931 * 119.99836 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00004 * 359.72332 * 16 15 14 18 18 C 1.38815 * 119.99923 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99674 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47125 * 60.00212 * 20 18 16 22 22 H 1.48500 * 109.46957 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47460 * 299.99934 * 20 18 16 24 24 C 1.53000 * 109.47338 * 293.96943 * 12 11 9 25 25 C 1.52998 * 117.49616 * 3.07756 * 24 12 11 26 26 C 1.53003 * 117.49374 * 294.45481 * 24 12 11 27 27 N 1.28851 * 125.74517 * 255.31630 * 5 2 1 28 28 H 1.09006 * 109.46820 * 300.00028 * 1 2 3 29 29 H 1.09003 * 109.47223 * 59.99737 * 1 2 3 30 30 H 1.08993 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46661 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46822 * 299.99637 * 3 2 1 33 33 H 1.08994 * 109.47054 * 60.00444 * 3 2 1 34 34 H 1.08993 * 109.46787 * 300.00158 * 4 2 1 35 35 H 1.09003 * 109.46878 * 59.99999 * 4 2 1 36 36 H 1.09004 * 109.47131 * 179.97438 * 4 2 1 37 37 H 1.07996 * 126.19060 * 359.97438 * 6 5 2 38 38 H 0.96998 * 119.99729 * 5.27492 * 11 9 8 39 39 H 1.08997 * 109.47014 * 300.00064 * 13 12 11 40 40 H 1.09000 * 109.46977 * 60.00273 * 13 12 11 41 41 H 1.09000 * 109.46990 * 180.02562 * 13 12 11 42 42 H 1.09006 * 109.46668 * 299.99783 * 14 12 11 43 43 H 1.08998 * 109.46789 * 180.02562 * 14 12 11 44 44 H 0.96997 * 119.99677 * 0.02562 * 15 14 12 45 45 H 0.97008 * 119.99716 * 179.97438 * 19 18 16 46 46 H 1.08996 * 115.54932 * 148.78887 * 24 12 11 47 47 H 1.08995 * 117.50433 * 0.02562 * 25 24 12 48 48 H 1.09003 * 117.49679 * 145.02763 * 25 24 12 49 49 H 1.08999 * 117.49665 * 214.97958 * 26 24 12 50 50 H 1.08995 * 117.50040 * 0.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0139 -2.0220 1.3922 7 7 2.5274 -2.2503 2.5741 8 6 2.8483 -1.0573 3.1073 9 6 3.4589 -0.8337 4.4354 10 8 3.7035 0.2967 4.8092 11 7 3.7442 -1.8833 5.2313 12 6 4.2412 -1.6579 6.5908 13 6 4.3414 -2.9962 7.3257 14 6 3.2770 -0.7357 7.3399 15 7 1.9528 -1.3596 7.4011 16 6 0.9203 -0.7143 8.0275 17 1 1.0831 0.2526 8.4803 18 6 -0.3343 -1.3056 8.0859 19 7 -0.5313 -2.4863 7.5387 20 14 -1.7427 -0.4257 8.9410 21 1 -1.9910 0.8771 8.2728 22 1 -2.9677 -1.2617 8.8650 23 1 -1.3895 -0.1925 10.3643 24 6 5.6240 -1.0063 6.5270 25 6 6.1769 -0.6566 5.1439 26 6 6.7661 -1.8302 5.9290 27 7 2.5193 -0.1252 2.2400 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6513 -2.7673 0.6998 38 1 3.6206 -2.7879 4.9038 39 1 3.3562 -3.4603 7.3712 40 1 5.0282 -3.6531 6.7920 41 1 4.7107 -2.8284 8.3374 42 1 3.2056 0.2177 6.8164 43 1 3.6470 -0.5677 8.3513 44 1 1.8076 -2.2297 6.9978 45 1 -1.4079 -2.8998 7.5798 46 1 5.8656 -0.3344 7.3505 47 1 5.5554 -0.8903 4.2795 48 1 6.7824 0.2456 5.0573 49 1 7.7593 -1.7001 6.3590 50 1 6.5323 -2.8363 5.5808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753522771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:54 Heat of formation + Delta-G solvation = 106.389729 kcal Electronic energy + Delta-G solvation = -30632.138196 eV Core-core repulsion = 26698.423713 eV Total energy + Delta-G solvation = -3933.714484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.35801 -40.10069 -37.60659 -36.80929 -34.86004 -33.32444 -32.49512 -31.37905 -30.64209 -29.40398 -27.92513 -27.77806 -25.95821 -24.59147 -23.52811 -22.92807 -21.97110 -21.26339 -20.58276 -20.07798 -18.79190 -17.72976 -17.16917 -16.52288 -16.44674 -15.80356 -15.38009 -14.97614 -14.54108 -14.44565 -14.28529 -13.94691 -13.64523 -13.42595 -13.17475 -13.05572 -12.83622 -12.75271 -12.68525 -12.20093 -12.04681 -12.01778 -11.95292 -11.79445 -11.66859 -11.30375 -11.18163 -10.96306 -10.77151 -10.69953 -10.64650 -10.26478 -10.22593 -10.13480 -10.01407 -9.81342 -9.56119 -9.35483 -9.28876 -8.68120 -8.45511 -6.72566 -5.62850 -2.88716 1.66191 2.15357 2.34082 3.38893 3.52432 3.55527 3.57655 3.86933 4.02905 4.13238 4.26712 4.31358 4.38105 4.70002 4.75589 4.95124 4.98249 4.99840 5.14083 5.21042 5.23554 5.27888 5.32281 5.32708 5.41108 5.52898 5.55464 5.66096 5.74295 5.76722 5.83092 5.89104 5.92058 6.10902 6.16162 6.20676 6.29626 6.39130 6.42445 6.48865 6.49619 6.63280 6.70659 6.76390 7.03053 7.25589 7.83686 7.92973 8.27415 8.56494 8.72555 9.67578 10.26972 10.62824 11.60233 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008480 B = 0.004503 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.199740 B = 6216.252131 C = 8560.237037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.158 4.158 5 N -0.296 5.296 6 C 0.184 3.816 7 N -0.480 5.480 8 C 0.147 3.853 9 C 0.625 3.375 10 O -0.506 6.506 11 N -0.695 5.695 12 C 0.202 3.798 13 C -0.147 4.147 14 C 0.140 3.860 15 N -0.726 5.726 16 C -0.228 4.228 17 H 0.068 0.932 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.185 4.185 27 N -0.249 5.249 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.218 0.782 38 H 0.404 0.596 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.024 0.976 44 H 0.383 0.617 45 H 0.252 0.748 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -0.049 -19.223 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.093 5.093 6 C -0.112 4.112 7 N -0.205 5.205 8 C -0.133 4.133 9 C 0.407 3.593 10 O -0.377 6.377 11 N -0.347 5.347 12 C 0.116 3.884 13 C -0.204 4.204 14 C 0.012 3.988 15 N -0.370 5.370 16 C -0.360 4.360 17 H 0.086 0.914 18 C -0.212 4.212 19 N -0.585 5.585 20 Si 0.735 3.265 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.163 4.163 25 C -0.196 4.196 26 C -0.222 4.222 27 N -0.087 5.087 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.239 0.761 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.217 0.783 45 H 0.062 0.938 46 H 0.127 0.873 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.807 1.281 -18.536 21.009 hybrid contribution -1.343 -0.444 -0.150 1.422 sum 8.463 0.837 -18.686 20.530 Atomic orbital electron populations 1.22278 0.91812 1.03734 1.04153 1.21103 0.95330 0.94263 0.80733 1.21987 1.02425 0.92395 1.03765 1.22244 1.02543 1.01164 0.95705 1.47720 1.42068 1.06181 1.13311 1.26236 1.02158 0.86423 0.96339 1.71276 1.16431 1.26202 1.06604 1.23964 1.05710 0.85445 0.98144 1.16001 0.77432 0.85166 0.80704 1.90791 1.51755 1.22562 1.72639 1.45647 1.66385 1.08819 1.13866 1.20120 0.91256 0.96345 0.80680 1.21973 1.03008 0.95053 1.00379 1.21119 0.85832 0.95831 0.96055 1.42261 1.04731 1.21982 1.68058 1.19190 0.89036 1.00768 1.26960 0.91436 1.24667 0.97493 0.97122 1.01892 1.69654 1.22405 1.16121 1.50323 0.86303 0.82203 0.78566 0.79387 1.21516 1.21847 1.21352 1.22545 0.93201 1.02651 0.97920 1.22897 1.02816 0.98358 0.95485 1.22977 0.97387 0.96515 1.05322 1.74276 1.13712 1.25356 0.95383 0.91010 0.89760 0.91305 0.91363 0.90505 0.90387 0.91151 0.89492 0.91241 0.76558 0.76062 0.90627 0.92759 0.90885 0.93132 0.95791 0.78300 0.93779 0.87279 0.89200 0.89551 0.89383 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.72 37.16 0.32 -0.92 16 2 C 0.17 1.45 1.23 -131.82 -0.16 1.29 16 3 C -0.15 -1.30 8.05 37.16 0.30 -1.00 16 4 C -0.16 -0.84 8.28 37.16 0.31 -0.53 16 5 N -0.30 -3.84 3.16 -49.84 -0.16 -4.00 16 6 C 0.18 2.31 11.71 -90.49 -1.06 1.25 16 7 N -0.48 -7.93 11.10 -12.36 -0.14 -8.07 16 8 C 0.15 2.78 7.96 -156.35 -1.24 1.54 16 9 C 0.63 12.62 5.09 -12.32 -0.06 12.55 16 10 O -0.51 -11.41 13.00 5.32 0.07 -11.34 16 11 N -0.70 -12.58 4.19 -48.52 -0.20 -12.78 16 12 C 0.20 3.60 0.55 -131.81 -0.07 3.52 16 13 C -0.15 -2.34 8.20 37.16 0.30 -2.03 16 14 C 0.14 3.15 4.83 -4.04 -0.02 3.13 16 15 N -0.73 -19.38 5.18 -59.90 -0.31 -19.69 16 16 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 19 N -0.94 -29.23 13.06 55.49 0.72 -28.51 16 20 Si 0.90 23.58 29.55 -169.99 -5.02 18.56 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.14 -2.25 4.82 -90.62 -0.44 -2.69 16 25 C -0.16 -2.43 8.30 -26.73 -0.22 -2.65 16 26 C -0.18 -2.40 9.68 -26.73 -0.26 -2.66 16 27 N -0.25 -4.35 11.09 32.08 0.36 -4.00 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 34 H 0.07 0.29 7.34 -51.93 -0.38 -0.09 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.22 1.62 7.53 -52.49 -0.40 1.23 16 38 H 0.40 6.81 8.20 -40.82 -0.33 6.47 16 39 H 0.07 1.38 6.86 -51.93 -0.36 1.03 16 40 H 0.05 0.72 6.96 -51.93 -0.36 0.36 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.28 5.92 -51.93 -0.31 0.97 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.38 10.56 6.35 -40.82 -0.26 10.30 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.11 1.68 8.07 -51.93 -0.42 1.26 16 47 H 0.09 1.53 5.09 -51.93 -0.26 1.26 16 48 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.09 1.13 7.26 -51.93 -0.38 0.75 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -36.89 397.86 -9.30 -46.19 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.07 Total: 14.37 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.55 Total: 3.27 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: 0.27 Total: -77.04 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.89 -9.30 -46.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753522771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.580 kcal (2) G-P(sol) polarization free energy of solvation -36.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds