Wall clock time and date at job start Tue Mar 31 2020 19:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46973 * 2 1 4 4 C 1.53002 * 109.47166 * 240.00053 * 2 1 3 5 5 N 1.46499 * 109.47415 * 120.00116 * 2 1 3 6 6 C 1.34577 * 125.74835 * 74.99605 * 5 2 1 7 7 N 1.30868 * 107.62823 * 180.02562 * 6 5 2 8 8 C 1.34556 * 107.26528 * 0.02562 * 7 6 5 9 9 C 1.47876 * 126.04586 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99597 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00076 * 0.02562 * 9 8 7 12 12 C 1.46500 * 120.00006 * 185.26814 * 11 9 8 13 13 C 1.53003 * 109.47089 * 173.96438 * 12 11 9 14 14 C 1.53008 * 109.46915 * 53.96849 * 12 11 9 15 15 N 1.46500 * 109.47276 * 59.99576 * 14 12 11 16 16 C 1.36931 * 119.99836 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00004 * 359.72332 * 16 15 14 18 18 C 1.38815 * 119.99923 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99674 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47125 * 60.00212 * 20 18 16 22 22 H 1.48500 * 109.46957 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47460 * 299.99934 * 20 18 16 24 24 C 1.53000 * 109.47338 * 293.96943 * 12 11 9 25 25 C 1.52998 * 117.49616 * 3.07756 * 24 12 11 26 26 C 1.53003 * 117.49374 * 294.45481 * 24 12 11 27 27 N 1.28851 * 125.74517 * 255.31630 * 5 2 1 28 28 H 1.09006 * 109.46820 * 300.00028 * 1 2 3 29 29 H 1.09003 * 109.47223 * 59.99737 * 1 2 3 30 30 H 1.08993 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46661 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46822 * 299.99637 * 3 2 1 33 33 H 1.08994 * 109.47054 * 60.00444 * 3 2 1 34 34 H 1.08993 * 109.46787 * 300.00158 * 4 2 1 35 35 H 1.09003 * 109.46878 * 59.99999 * 4 2 1 36 36 H 1.09004 * 109.47131 * 179.97438 * 4 2 1 37 37 H 1.07996 * 126.19060 * 359.97438 * 6 5 2 38 38 H 0.96998 * 119.99729 * 5.27492 * 11 9 8 39 39 H 1.08997 * 109.47014 * 300.00064 * 13 12 11 40 40 H 1.09000 * 109.46977 * 60.00273 * 13 12 11 41 41 H 1.09000 * 109.46990 * 180.02562 * 13 12 11 42 42 H 1.09006 * 109.46668 * 299.99783 * 14 12 11 43 43 H 1.08998 * 109.46789 * 180.02562 * 14 12 11 44 44 H 0.96997 * 119.99677 * 0.02562 * 15 14 12 45 45 H 0.97008 * 119.99716 * 179.97438 * 19 18 16 46 46 H 1.08996 * 115.54932 * 148.78887 * 24 12 11 47 47 H 1.08995 * 117.50433 * 0.02562 * 25 24 12 48 48 H 1.09003 * 117.49679 * 145.02763 * 25 24 12 49 49 H 1.08999 * 117.49665 * 214.97958 * 26 24 12 50 50 H 1.08995 * 117.50040 * 0.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0139 -2.0220 1.3922 7 7 2.5274 -2.2503 2.5741 8 6 2.8483 -1.0573 3.1073 9 6 3.4589 -0.8337 4.4354 10 8 3.7035 0.2967 4.8092 11 7 3.7442 -1.8833 5.2313 12 6 4.2412 -1.6579 6.5908 13 6 4.3414 -2.9962 7.3257 14 6 3.2770 -0.7357 7.3399 15 7 1.9528 -1.3596 7.4011 16 6 0.9203 -0.7143 8.0275 17 1 1.0831 0.2526 8.4803 18 6 -0.3343 -1.3056 8.0859 19 7 -0.5313 -2.4863 7.5387 20 14 -1.7427 -0.4257 8.9410 21 1 -1.9910 0.8771 8.2728 22 1 -2.9677 -1.2617 8.8650 23 1 -1.3895 -0.1925 10.3643 24 6 5.6240 -1.0063 6.5270 25 6 6.1769 -0.6566 5.1439 26 6 6.7661 -1.8302 5.9290 27 7 2.5193 -0.1252 2.2400 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6513 -2.7673 0.6998 38 1 3.6206 -2.7879 4.9038 39 1 3.3562 -3.4603 7.3712 40 1 5.0282 -3.6531 6.7920 41 1 4.7107 -2.8284 8.3374 42 1 3.2056 0.2177 6.8164 43 1 3.6470 -0.5677 8.3513 44 1 1.8076 -2.2297 6.9978 45 1 -1.4079 -2.8998 7.5798 46 1 5.8656 -0.3344 7.3505 47 1 5.5554 -0.8903 4.2795 48 1 6.7824 0.2456 5.0573 49 1 7.7593 -1.7001 6.3590 50 1 6.5323 -2.8363 5.5808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753522771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:53 Heat of formation + Delta-G solvation = 81.590052 kcal Electronic energy + Delta-G solvation = -30633.213591 eV Core-core repulsion = 26698.423713 eV Total energy + Delta-G solvation = -3934.789878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.49285 -41.55685 -38.60582 -38.04430 -36.60565 -35.00896 -33.75833 -33.08456 -31.97358 -31.06626 -28.48480 -28.41964 -27.68319 -26.01597 -25.32393 -23.98283 -23.12386 -22.93501 -21.84500 -21.09265 -20.28309 -19.29611 -18.86083 -17.67766 -17.48585 -17.15408 -16.95281 -16.42782 -16.09884 -15.50926 -15.37593 -15.18016 -15.03321 -14.93755 -14.80723 -14.53778 -13.79626 -13.61017 -13.52418 -13.31129 -13.29986 -13.24050 -13.02103 -12.99597 -12.79628 -12.79437 -12.44376 -12.37021 -12.30490 -12.15928 -12.01899 -12.01324 -11.77686 -11.44405 -11.41591 -11.38834 -11.15509 -10.96590 -10.61079 -10.50630 -9.96493 -8.94315 -7.94749 -5.21405 0.40774 1.14600 1.23697 1.41284 1.45308 1.51161 2.06272 2.43219 2.53847 2.93925 3.16438 3.29823 3.38434 3.64675 3.65105 3.75552 3.79428 3.88586 3.99157 4.00789 4.17299 4.35418 4.36532 4.53302 4.55273 4.56927 4.61111 4.66453 4.76513 4.78522 4.80417 4.83154 4.90308 4.95490 4.96853 5.07653 5.07986 5.16264 5.18349 5.20307 5.27490 5.32383 5.36743 5.40933 5.45740 5.64722 5.72781 6.27125 6.50091 7.03390 7.26155 7.33949 8.09291 8.37118 9.28150 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008480 B = 0.004503 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.199740 B = 6216.252131 C = 8560.237037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 C -0.147 4.147 4 C -0.152 4.152 5 N -0.288 5.288 6 C 0.195 3.805 7 N -0.504 5.504 8 C 0.113 3.887 9 C 0.620 3.380 10 O -0.543 6.543 11 N -0.686 5.686 12 C 0.207 3.793 13 C -0.138 4.138 14 C 0.141 3.859 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.064 0.936 18 C -0.070 4.070 19 N -0.964 5.964 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.160 4.160 25 C -0.171 4.171 26 C -0.147 4.147 27 N -0.276 5.276 28 H 0.036 0.964 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.270 0.730 38 H 0.410 0.590 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.028 0.972 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.115 0.885 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.855 -1.232 -21.164 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.205 4.205 4 C -0.209 4.209 5 N -0.085 5.085 6 C -0.099 4.099 7 N -0.230 5.230 8 C -0.166 4.166 9 C 0.403 3.597 10 O -0.418 6.418 11 N -0.338 5.338 12 C 0.121 3.879 13 C -0.195 4.195 14 C 0.014 3.986 15 N -0.374 5.374 16 C -0.377 4.377 17 H 0.082 0.918 18 C -0.263 4.263 19 N -0.614 5.614 20 Si 0.798 3.202 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.179 4.179 25 C -0.208 4.208 26 C -0.183 4.183 27 N -0.116 5.116 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.286 0.714 38 H 0.246 0.754 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.039 0.961 43 H 0.045 0.955 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.133 0.867 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.094 0.093 -20.486 22.838 hybrid contribution -1.455 -0.003 0.324 1.491 sum 8.639 0.090 -20.163 21.936 Atomic orbital electron populations 1.22310 0.90809 1.04440 1.04089 1.21675 0.96076 0.94239 0.80477 1.22002 1.01617 0.92990 1.03841 1.22279 1.02076 1.02184 0.94399 1.48181 1.40559 1.06701 1.13089 1.27176 0.99986 0.87051 0.95700 1.71201 1.17753 1.25645 1.08415 1.23777 1.07794 0.86752 0.98311 1.16311 0.76985 0.84962 0.81441 1.90747 1.53486 1.23856 1.73739 1.45603 1.65822 1.08714 1.13641 1.20039 0.91163 0.96522 0.80131 1.21915 1.02340 0.94117 1.01147 1.21153 0.85343 0.95646 0.96493 1.42336 1.05768 1.21660 1.67602 1.19525 0.90304 1.00844 1.27060 0.91839 1.25456 0.99826 0.98023 1.02980 1.69805 1.22752 1.17376 1.51508 0.85277 0.78934 0.77247 0.78711 1.21428 1.21477 1.20050 1.22443 0.92926 1.04270 0.98295 1.22832 1.03320 1.00042 0.94624 1.23077 0.97230 0.95907 1.02115 1.74189 1.14440 1.26341 0.96614 0.94483 0.86364 0.90211 0.92608 0.86904 0.93760 0.89226 0.86563 0.92012 0.71432 0.75401 0.93322 0.89366 0.89957 0.96133 0.95460 0.79030 0.94047 0.87206 0.91145 0.89340 0.86673 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.72 71.98 0.63 -1.50 16 2 C 0.16 2.43 1.23 3.61 0.00 2.44 16 3 C -0.15 -2.54 8.05 71.98 0.58 -1.96 16 4 C -0.15 -1.07 8.28 71.98 0.60 -0.47 16 5 N -0.29 -7.39 3.16 -311.59 -0.99 -8.37 16 6 C 0.20 4.64 11.71 180.30 2.11 6.75 16 7 N -0.50 -16.79 11.10 -193.03 -2.14 -18.94 16 8 C 0.11 4.45 7.96 137.13 1.09 5.54 16 9 C 0.62 26.47 5.09 86.80 0.44 26.91 16 10 O -0.54 -26.29 13.00 -3.88 -0.05 -26.34 16 11 N -0.69 -25.73 4.19 -425.71 -1.78 -27.51 16 12 C 0.21 7.52 0.55 3.61 0.00 7.52 16 13 C -0.14 -4.30 8.20 71.98 0.59 -3.71 16 14 C 0.14 6.64 4.83 86.38 0.42 7.05 16 15 N -0.73 -40.52 5.18 -343.43 -1.78 -42.29 16 16 C -0.25 -15.01 9.99 84.04 0.84 -14.17 16 17 H 0.06 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.96 -61.29 13.06 21.65 0.28 -61.00 16 20 Si 0.97 49.16 29.55 68.60 2.03 51.19 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 24 C -0.16 -4.98 4.82 -10.79 -0.05 -5.03 16 25 C -0.17 -5.26 8.30 30.60 0.25 -5.00 16 26 C -0.15 -3.47 9.68 30.60 0.30 -3.17 16 27 N -0.28 -10.09 11.09 -52.43 -0.58 -10.67 16 28 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.06 8.02 -2.39 -0.02 1.04 16 34 H 0.09 0.32 7.34 -2.39 -0.02 0.30 16 35 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.27 3.00 7.53 -2.91 -0.02 2.98 16 38 H 0.41 14.18 8.20 -92.71 -0.76 13.42 16 39 H 0.05 1.79 6.86 -2.39 -0.02 1.78 16 40 H 0.09 2.14 6.96 -2.39 -0.02 2.12 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.02 1.11 5.92 -2.38 -0.01 1.10 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.38 21.58 6.35 -92.71 -0.59 20.99 16 45 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 46 H 0.11 3.38 8.07 -2.39 -0.02 3.36 16 47 H 0.07 2.48 5.09 -2.39 -0.01 2.46 16 48 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.10 2.21 7.26 -2.39 -0.02 2.19 16 Total: -1.00 -85.63 397.86 2.87 -82.76 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: -0.39 Total: 43.80 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 8.27 Total: 17.38 kcal Atomic # 7 Polarization: -161.80 SS G_CDS: -6.99 Total: -168.79 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -85.63 2.87 -82.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753522771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.355 kcal (2) G-P(sol) polarization free energy of solvation -85.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds