Wall clock time and date at job start Tue Mar 31 2020 18:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47144 * 2 1 4 4 C 1.53001 * 109.47355 * 239.99390 * 2 1 3 5 5 N 1.46507 * 109.46867 * 119.99688 * 2 1 3 6 6 C 1.34587 * 125.74405 * 75.00191 * 5 2 1 7 7 N 1.30876 * 107.62266 * 179.97438 * 6 5 2 8 8 C 1.34550 * 107.26617 * 359.97438 * 7 6 5 9 9 C 1.47876 * 126.04560 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99832 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99833 * 0.03431 * 9 8 7 12 12 C 1.46504 * 119.99844 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47225 * 175.53634 * 12 11 9 14 14 N 1.46506 * 110.53641 * 57.61931 * 13 12 11 15 15 C 1.36933 * 120.00401 * 58.62243 * 14 13 12 16 16 H 1.08006 * 119.99300 * 6.53639 * 15 14 13 17 17 C 1.38804 * 120.00073 * 186.53661 * 15 14 13 18 18 N 1.31618 * 120.00404 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47036 * 119.99986 * 19 17 15 22 22 H 1.48500 * 109.47030 * 240.00218 * 19 17 15 23 23 C 1.54889 * 110.48686 * 180.22825 * 13 12 11 24 24 C 1.54895 * 102.74848 * 156.62225 * 23 13 12 25 25 C 1.54272 * 104.19256 * 322.05887 * 24 23 13 26 26 C 1.53871 * 106.60145 * 23.60982 * 25 24 23 27 27 N 1.28848 * 125.75205 * 255.31396 * 5 2 1 28 28 H 1.08995 * 109.47323 * 300.00057 * 1 2 3 29 29 H 1.09002 * 109.46750 * 60.00287 * 1 2 3 30 30 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47102 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47062 * 299.99521 * 3 2 1 33 33 H 1.08996 * 109.47577 * 59.99849 * 3 2 1 34 34 H 1.08998 * 109.47043 * 300.00743 * 4 2 1 35 35 H 1.09006 * 109.46492 * 60.00238 * 4 2 1 36 36 H 1.08995 * 109.47303 * 179.97438 * 4 2 1 37 37 H 1.07992 * 126.19225 * 359.97438 * 6 5 2 38 38 H 0.97003 * 120.00165 * 359.97438 * 11 9 8 39 39 H 1.08997 * 109.46833 * 55.53835 * 12 11 9 40 40 H 1.09005 * 109.47165 * 295.53940 * 12 11 9 41 41 H 0.96999 * 119.99526 * 238.62385 * 14 13 12 42 42 H 0.97001 * 120.00469 * 179.97438 * 18 17 15 43 43 H 1.08995 * 110.75801 * 274.93614 * 23 13 12 44 44 H 1.09001 * 110.75426 * 38.30728 * 23 13 12 45 45 H 1.08994 * 110.48349 * 203.38368 * 24 23 13 46 46 H 1.08997 * 110.48700 * 80.73417 * 24 23 13 47 47 H 1.09001 * 110.03304 * 264.32241 * 25 24 23 48 48 H 1.09006 * 110.03030 * 142.89386 * 25 24 23 49 49 H 1.08998 * 110.03485 * 240.71240 * 26 25 24 50 50 H 1.08996 * 110.03357 * 119.27899 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 2.0138 -2.0221 1.3923 7 7 2.5282 -2.2504 2.5739 8 6 2.8506 -1.0575 3.1063 9 6 3.4617 -0.8338 4.4342 10 8 3.7077 0.2965 4.8074 11 7 3.7459 -1.8834 5.2306 12 6 4.3518 -1.6618 6.5459 13 6 4.4673 -2.9962 7.2855 14 7 5.2555 -3.9512 6.5025 15 6 6.5431 -3.6485 6.1483 16 1 7.0134 -2.7557 6.5333 17 6 7.2439 -4.4891 5.2945 18 7 6.6710 -5.5774 4.8257 19 14 9.0003 -4.0757 4.8107 20 1 9.4092 -2.8080 5.4672 21 1 9.9039 -5.1717 5.2435 22 1 9.0837 -3.9184 3.3364 23 6 5.1007 -2.7881 8.6835 24 6 4.5951 -4.0200 9.4747 25 6 3.1484 -4.2208 8.9780 26 6 3.0672 -3.5699 7.5861 27 7 2.5191 -0.1253 2.2402 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7210 -1.2494 37 1 1.6513 -2.7674 0.6999 38 1 3.5492 -2.7854 4.9329 39 1 3.7278 -0.9794 7.1230 40 1 5.3442 -1.2288 6.4205 41 1 4.8652 -4.7980 6.2350 42 1 7.1606 -6.1646 4.2287 43 1 6.1888 -2.7905 8.6189 44 1 4.7417 -1.8640 9.1366 45 1 4.6060 -3.8164 10.5454 46 1 5.2021 -4.8959 9.2457 47 1 2.4491 -3.7352 9.6587 48 1 2.9225 -5.2848 8.9064 49 1 2.3285 -2.7684 7.5912 50 1 2.8020 -4.3179 6.8390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:28 Heat of formation + Delta-G solvation = 55.535347 kcal Electronic energy + Delta-G solvation = -29939.672417 eV Core-core repulsion = 26003.752722 eV Total energy + Delta-G solvation = -3935.919695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.38440 -39.21427 -38.02258 -37.38280 -34.03696 -33.22273 -32.47061 -31.01016 -30.40337 -28.17612 -28.03697 -27.95144 -27.77721 -25.20247 -23.64680 -23.03916 -22.78532 -20.33056 -20.12600 -19.59978 -18.68303 -17.62788 -16.90667 -16.51936 -16.46156 -15.69961 -15.37821 -14.66131 -14.58017 -14.54459 -14.44692 -14.05999 -14.03744 -13.45104 -13.28276 -13.10840 -12.92649 -12.73636 -12.70926 -12.49695 -12.24579 -12.05099 -11.83356 -11.67652 -11.34175 -11.29270 -11.03553 -10.77047 -10.70501 -10.57134 -10.41987 -10.30490 -10.22559 -10.19985 -9.92784 -9.76118 -9.71086 -9.58483 -9.40212 -8.84336 -8.34535 -6.93639 -5.73384 -3.02264 1.61144 2.12505 2.32704 3.45900 3.51261 3.53512 3.54407 3.82047 3.99782 4.22822 4.33308 4.33617 4.62448 4.74187 4.95769 4.99074 5.11824 5.14808 5.21018 5.21613 5.28450 5.29804 5.33937 5.36916 5.49868 5.63514 5.67394 5.74917 5.85648 5.87770 6.01372 6.05807 6.17136 6.22268 6.29308 6.34796 6.44276 6.47638 6.52631 6.60755 6.63392 6.71684 6.86995 6.88429 7.05564 7.13890 7.77897 7.99694 8.31752 8.45002 8.73170 9.57091 10.11328 10.47147 11.48630 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003411 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.776557 B = 8207.698471 C = 9553.321468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.298 5.298 6 C 0.185 3.815 7 N -0.473 5.473 8 C 0.148 3.852 9 C 0.608 3.392 10 O -0.539 6.539 11 N -0.677 5.677 12 C 0.120 3.880 13 C 0.189 3.811 14 N -0.707 5.707 15 C -0.232 4.232 16 H 0.070 0.930 17 C -0.007 4.007 18 N -0.928 5.928 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.294 1.294 23 C -0.130 4.130 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.124 4.124 27 N -0.254 5.254 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.219 0.781 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 7.803 -8.566 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.095 5.095 6 C -0.111 4.111 7 N -0.198 5.198 8 C -0.132 4.132 9 C 0.389 3.611 10 O -0.414 6.414 11 N -0.327 5.327 12 C -0.005 4.005 13 C 0.097 3.903 14 N -0.349 5.349 15 C -0.363 4.363 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.730 3.270 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.171 4.171 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.162 4.162 27 N -0.092 5.092 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.603 9.024 -8.028 18.951 hybrid contribution 0.760 -0.784 -1.050 1.515 sum -13.843 8.240 -9.079 18.492 Atomic orbital electron populations 1.22256 0.91928 1.03584 1.03940 1.21099 0.95160 0.94298 0.80884 1.21989 1.02699 0.92341 1.03575 1.22262 1.02870 1.01165 0.95585 1.47756 1.42126 1.06257 1.13332 1.26315 1.02037 0.86319 0.96431 1.71374 1.15564 1.25861 1.06990 1.23911 1.05621 0.85451 0.98248 1.16297 0.78610 0.85194 0.81021 1.90768 1.54297 1.22784 1.73587 1.45490 1.60303 1.09507 1.17403 1.21926 0.97719 0.98763 0.82136 1.20626 0.90315 0.88774 0.90634 1.42410 1.12042 1.17922 1.62476 1.19126 0.89226 1.06333 1.21626 0.91205 1.24673 0.98195 0.97628 0.99831 1.69662 1.36611 1.14270 1.37074 0.86238 0.85274 0.77426 0.78015 1.20558 1.22010 1.22095 1.22880 1.01657 0.96482 0.96057 1.22195 0.95730 0.99289 0.97830 1.22056 0.97199 1.00042 0.96285 1.22385 0.96924 0.99907 0.97021 1.74255 1.13950 1.25484 0.95485 0.91292 0.89755 0.91339 0.91228 0.90491 0.90549 0.91072 0.89481 0.91058 0.76454 0.74852 0.92403 0.91386 0.77974 0.93709 0.90703 0.92789 0.93089 0.91182 0.92831 0.92440 0.91985 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.72 37.16 0.32 -0.62 16 2 C 0.17 1.35 1.22 -131.82 -0.16 1.19 16 3 C -0.15 -1.23 8.05 37.15 0.30 -0.93 16 4 C -0.16 -0.92 8.28 37.16 0.31 -0.61 16 5 N -0.30 -3.75 3.16 -49.84 -0.16 -3.91 16 6 C 0.18 2.34 11.71 -90.47 -1.06 1.28 16 7 N -0.47 -8.15 11.09 -12.36 -0.14 -8.29 16 8 C 0.15 2.81 7.96 -156.36 -1.24 1.56 16 9 C 0.61 12.73 7.83 -12.32 -0.10 12.63 16 10 O -0.54 -12.47 17.08 5.32 0.09 -12.38 16 11 N -0.68 -13.58 5.24 -61.24 -0.32 -13.90 16 12 C 0.12 2.36 4.29 -4.04 -0.02 2.34 16 13 C 0.19 3.58 0.52 -130.16 -0.07 3.51 16 14 N -0.71 -16.42 4.70 -45.70 -0.21 -16.63 16 15 C -0.23 -6.13 8.59 -15.06 -0.13 -6.26 16 16 H 0.07 1.85 7.13 -52.48 -0.37 1.48 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -27.24 13.07 55.49 0.73 -26.51 16 19 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 23 C -0.13 -2.29 5.90 -24.74 -0.15 -2.44 16 24 C -0.11 -1.81 6.79 -25.07 -0.17 -1.98 16 25 C -0.12 -1.75 6.80 -25.61 -0.17 -1.92 16 26 C -0.12 -2.03 5.70 -25.61 -0.15 -2.17 16 27 N -0.25 -4.31 11.09 32.07 0.36 -3.95 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 34 H 0.07 0.32 7.34 -51.93 -0.38 -0.06 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.22 1.69 7.53 -52.49 -0.40 1.30 16 38 H 0.41 8.48 7.78 -40.82 -0.32 8.17 16 39 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.07 1.49 7.52 -51.93 -0.39 1.10 16 41 H 0.39 9.64 7.50 -40.82 -0.31 9.33 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 1.47 7.20 -51.93 -0.37 1.09 16 44 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.94 7.80 -51.93 -0.40 0.54 16 50 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -33.74 403.76 -9.56 -43.30 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -8.39 Total: 13.29 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.58 Total: 5.29 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: 0.25 Total: -73.19 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.74 -9.56 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.838 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds