Wall clock time and date at job start Tue Mar 31 2020 18:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 N 1.46500 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.34818 * 126.59325 * 125.00494 * 4 3 2 6 6 C 1.36596 * 106.84292 * 179.97438 * 5 4 3 7 7 C 1.47517 * 125.77136 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00412 * 7.09279 * 7 6 5 9 9 N 1.34778 * 120.00048 * 187.08530 * 7 6 5 10 10 C 1.46927 * 120.62867 * 6.78531 * 9 7 6 11 11 C 1.53189 * 108.77665 * 126.36636 * 10 9 7 12 12 C 1.53039 * 109.31531 * 54.63324 * 11 10 9 13 13 C 1.53035 * 109.53493 * 298.63238 * 12 11 10 14 14 H 1.09002 * 109.50014 * 301.41623 * 13 12 11 15 15 C 1.53002 * 109.49973 * 181.31545 * 13 12 11 16 16 C 1.46920 * 120.63280 * 186.75189 * 9 7 6 17 17 H 1.09003 * 109.58417 * 113.84677 * 16 9 7 18 18 C 1.53004 * 109.58685 * 353.42369 * 16 9 7 19 19 N 1.46497 * 109.46842 * 67.17168 * 18 16 9 20 20 C 1.36940 * 119.99956 * 175.56890 * 19 18 16 21 21 H 1.07998 * 119.99886 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00378 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99613 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00277 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46921 * 60.00045 * 24 22 20 26 26 H 1.48496 * 109.47406 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47566 * 300.00318 * 24 22 20 28 28 N 1.34406 * 108.45510 * 0.24065 * 6 5 4 29 29 N 1.28759 * 109.52439 * 359.58656 * 28 6 5 30 30 H 1.09004 * 109.46995 * 60.00082 * 1 2 3 31 31 H 1.09001 * 109.47754 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47640 * 300.00306 * 1 2 3 33 33 H 1.09005 * 109.47122 * 239.99603 * 2 1 3 34 34 H 1.09004 * 109.46995 * 119.99918 * 2 1 3 35 35 H 1.08997 * 109.47075 * 59.99925 * 3 2 1 36 36 H 1.08992 * 109.47351 * 299.99794 * 3 2 1 37 37 H 1.08010 * 126.57861 * 359.97438 * 5 4 3 38 38 H 1.09004 * 109.58700 * 6.57194 * 10 9 7 39 39 H 1.09005 * 109.57990 * 246.15080 * 10 9 7 40 40 H 1.09005 * 109.49654 * 174.58386 * 11 10 9 41 41 H 1.09002 * 109.49770 * 294.67610 * 11 10 9 42 42 H 1.08996 * 109.45717 * 58.65674 * 12 11 10 43 43 H 1.09003 * 109.45616 * 178.61442 * 12 11 10 44 44 H 1.09008 * 109.46747 * 59.99612 * 15 13 12 45 45 H 1.08997 * 109.47714 * 179.97438 * 15 13 12 46 46 H 1.09001 * 109.47082 * 300.00872 * 15 13 12 47 47 H 1.09002 * 109.46720 * 187.16834 * 18 16 9 48 48 H 1.08995 * 109.46924 * 307.17002 * 18 16 9 49 49 H 0.97001 * 120.00381 * 355.56241 * 19 18 16 50 50 H 0.97004 * 119.99891 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.3091 2.0631 -0.8858 6 6 5.5945 1.7987 -0.5068 7 6 6.8109 2.2773 -1.1905 8 8 6.7210 3.0746 -2.1041 9 7 8.0219 1.8309 -0.8025 10 6 8.1402 0.7598 0.1963 11 6 9.0162 -0.3571 -0.3797 12 6 10.3547 0.2315 -0.8316 13 6 10.1126 1.2701 -1.9291 14 1 9.5981 0.8004 -2.7675 15 6 11.4534 1.8343 -2.4032 16 6 9.2489 2.4055 -1.3706 17 1 9.7992 2.9343 -0.5923 18 6 8.8871 3.3762 -2.4966 19 7 8.1941 4.5385 -1.9354 20 6 7.8517 5.5884 -2.7452 21 1 8.0930 5.5597 -3.7975 22 6 7.1946 6.6895 -2.2136 23 7 6.9002 6.7243 -0.9312 24 14 6.7283 8.1219 -3.3181 25 1 5.8185 7.6444 -4.3904 26 1 6.0407 9.1638 -2.5139 27 1 7.9542 8.6960 -3.9286 28 7 5.5636 1.0240 0.5911 29 7 4.3405 0.7972 0.9235 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9968 2.6557 -1.7330 38 1 7.1507 0.3655 0.4281 39 1 8.6001 1.1544 1.1024 40 1 9.1912 -1.1135 0.3854 41 1 8.5121 -0.8116 -1.2327 42 1 10.8469 0.7074 0.0166 43 1 10.9894 -0.5654 -1.2193 44 1 12.0687 1.0256 -2.7978 45 1 11.2806 2.5736 -3.1852 46 1 11.9665 2.3050 -1.5645 47 1 9.7967 3.7037 -3.0002 48 1 8.2355 2.8754 -3.2126 49 1 7.9777 4.5645 -0.9902 50 1 6.4413 7.4939 -0.5596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753810786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:56 Heat of formation + Delta-G solvation = 115.094675 kcal Electronic energy + Delta-G solvation = -30699.716067 eV Core-core repulsion = 26766.379059 eV Total energy + Delta-G solvation = -3933.337009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97593 -39.84903 -37.02148 -36.11952 -34.47237 -33.37169 -32.52615 -31.98304 -30.60270 -29.97768 -27.50980 -26.63705 -25.77639 -24.12815 -23.05731 -22.63701 -22.13048 -21.41563 -20.75421 -20.04452 -19.04421 -17.30998 -16.71763 -16.11392 -15.88383 -15.49367 -15.22104 -14.76146 -14.61047 -14.45899 -14.11694 -13.91681 -13.73052 -13.60322 -13.28513 -12.93463 -12.81939 -12.67276 -12.40441 -12.39704 -12.25540 -11.98577 -11.91490 -11.70944 -11.58992 -11.43867 -11.17960 -11.05526 -10.77542 -10.75486 -10.66311 -10.47591 -10.24127 -10.12929 -9.82669 -9.64933 -9.46330 -8.97744 -8.64577 -8.35482 -7.88767 -6.43531 -5.52267 -2.70813 1.40072 2.13842 2.17813 3.53661 3.56091 3.59099 3.60617 4.01154 4.18965 4.43519 4.53403 4.72005 4.77257 4.89044 4.93183 4.99572 5.05803 5.09232 5.19183 5.23547 5.30262 5.32524 5.49671 5.58402 5.59727 5.65068 5.72437 5.78181 5.80849 5.83341 5.86137 5.89681 6.00438 6.03921 6.10132 6.14716 6.25873 6.35338 6.40721 6.53272 6.56208 6.60974 6.69347 6.84742 7.08504 7.42624 7.89316 8.06994 8.25044 8.65488 9.04299 9.76455 10.37587 10.71881 11.71338 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.004871 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.837597 B = 5746.373810 C = 8866.633988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.363 5.363 5 C 0.087 3.913 6 C -0.075 4.075 7 C 0.554 3.446 8 O -0.440 6.440 9 N -0.603 5.603 10 C 0.088 3.912 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.098 4.098 14 H 0.072 0.928 15 C -0.146 4.146 16 C 0.149 3.851 17 H 0.068 0.932 18 C 0.159 3.841 19 N -0.692 5.692 20 C -0.205 4.205 21 H 0.065 0.935 22 C -0.022 4.022 23 N -0.938 5.938 24 Si 0.900 3.100 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.289 1.289 28 N -0.213 5.213 29 N -0.081 5.081 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.201 0.799 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.040 0.960 49 H 0.380 0.620 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -17.820 2.201 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.069 4.069 6 C -0.215 4.215 7 C 0.337 3.663 8 O -0.307 6.307 9 N -0.339 5.339 10 C -0.036 4.036 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.118 4.118 14 H 0.090 0.910 15 C -0.203 4.203 16 C 0.046 3.954 17 H 0.086 0.914 18 C 0.032 3.968 19 N -0.335 5.335 20 C -0.337 4.337 21 H 0.083 0.917 22 C -0.216 4.216 23 N -0.589 5.589 24 Si 0.733 3.267 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.217 1.217 28 N -0.086 5.086 29 N -0.060 5.060 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.218 0.782 38 H 0.142 0.858 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.214 0.786 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.646 -18.087 2.765 19.149 hybrid contribution -0.604 1.521 -0.937 1.886 sum -6.249 -16.566 1.828 17.799 Atomic orbital electron populations 1.21706 0.94085 1.02622 1.02366 1.21815 0.96731 0.94869 1.04033 1.22071 0.73132 0.99635 1.05061 1.50382 1.08391 1.35934 1.20244 1.23364 0.90273 0.96943 0.96308 1.21858 0.95292 1.06281 0.98023 1.16864 0.81377 0.82543 0.85553 1.91230 1.84449 1.28575 1.26457 1.47512 1.04741 1.38457 1.43225 1.22344 1.03586 0.87321 0.90309 1.21918 0.96284 0.98011 1.00851 1.21585 0.96978 0.98019 0.98489 1.21466 0.96282 0.95977 0.98088 0.90974 1.21842 0.96021 1.00841 1.01638 1.21503 0.84309 0.93071 0.96559 0.91439 1.20969 0.94288 0.88008 0.93553 1.42325 1.67049 1.15444 1.08704 1.19125 1.28651 0.94239 0.91704 0.91726 1.24596 1.02543 0.98608 0.95868 1.69664 1.47740 1.30557 1.10901 0.86343 0.78084 0.82754 0.79534 1.21732 1.22084 1.21664 1.74306 1.11854 1.11499 1.10991 1.81842 0.93936 1.18256 1.11977 0.92234 0.91822 0.92122 0.91148 0.90152 0.88610 0.87859 0.78180 0.85785 0.92497 0.91412 0.92095 0.91960 0.92287 0.93001 0.91679 0.92637 0.96335 0.94251 0.78634 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.43 16 2 C -0.14 -0.99 6.14 -26.74 -0.16 -1.16 16 3 C 0.12 1.04 6.54 -4.04 -0.03 1.01 16 4 N -0.36 -4.77 3.69 -61.06 -0.23 -5.00 16 5 C 0.09 1.33 11.28 -16.83 -0.19 1.14 16 6 C -0.08 -1.36 6.70 -83.55 -0.56 -1.92 16 7 C 0.55 11.29 6.96 -12.48 -0.09 11.20 16 8 O -0.44 -10.58 10.55 5.28 0.06 -10.52 16 9 N -0.60 -10.86 2.97 -166.44 -0.49 -11.36 16 10 C 0.09 1.33 6.10 -3.71 -0.02 1.30 16 11 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 12 C -0.11 -1.36 5.17 -26.69 -0.14 -1.49 16 13 C -0.10 -1.38 2.34 -90.50 -0.21 -1.60 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.15 -1.86 8.97 37.16 0.33 -1.52 16 16 C 0.15 2.67 2.41 -67.60 -0.16 2.51 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.16 3.48 4.76 -4.04 -0.02 3.46 16 19 N -0.69 -18.59 3.17 -59.91 -0.19 -18.78 16 20 C -0.20 -6.03 9.63 -15.06 -0.15 -6.18 16 21 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 23 N -0.94 -29.64 13.06 55.49 0.72 -28.92 16 24 Si 0.90 23.44 29.55 -169.99 -5.02 18.42 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 N -0.21 -3.62 8.77 32.85 0.29 -3.33 16 29 N -0.08 -1.25 13.65 60.35 0.82 -0.43 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.66 8.08 -51.93 -0.42 0.25 16 37 H 0.20 2.77 8.06 -52.48 -0.42 2.34 16 38 H 0.13 1.93 4.08 -82.80 -0.34 1.59 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 45 H 0.06 0.90 6.48 -51.93 -0.34 0.56 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.02 0.41 6.34 -51.93 -0.33 0.08 16 48 H 0.04 0.93 6.45 -51.93 -0.34 0.59 16 49 H 0.38 11.00 6.91 -40.82 -0.28 10.72 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 389.89 15.07 5.88 5.88 Total: -1.00 -35.11 389.89 -7.80 -42.91 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.35 Total: 7.33 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.28 Total: 3.81 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.93 Total: -67.82 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.11 -7.80 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753810786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.000 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds