Wall clock time and date at job start Tue Mar 31 2020 18:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 N 1.46500 * 109.46867 * 179.97438 * 3 2 1 5 5 C 1.34818 * 126.59325 * 125.00494 * 4 3 2 6 6 C 1.36596 * 106.84292 * 179.97438 * 5 4 3 7 7 C 1.47517 * 125.77136 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00412 * 7.09279 * 7 6 5 9 9 N 1.34778 * 120.00048 * 187.08530 * 7 6 5 10 10 C 1.46927 * 120.62867 * 6.78531 * 9 7 6 11 11 C 1.53189 * 108.77665 * 126.36636 * 10 9 7 12 12 C 1.53039 * 109.31531 * 54.63324 * 11 10 9 13 13 C 1.53035 * 109.53493 * 298.63238 * 12 11 10 14 14 H 1.09002 * 109.50014 * 301.41623 * 13 12 11 15 15 C 1.53002 * 109.49973 * 181.31545 * 13 12 11 16 16 C 1.46920 * 120.63280 * 186.75189 * 9 7 6 17 17 H 1.09003 * 109.58417 * 113.84677 * 16 9 7 18 18 C 1.53004 * 109.58685 * 353.42369 * 16 9 7 19 19 N 1.46497 * 109.46842 * 67.17168 * 18 16 9 20 20 C 1.36940 * 119.99956 * 175.56890 * 19 18 16 21 21 H 1.07998 * 119.99886 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00378 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99613 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00277 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46921 * 60.00045 * 24 22 20 26 26 H 1.48496 * 109.47406 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47566 * 300.00318 * 24 22 20 28 28 N 1.34406 * 108.45510 * 0.24065 * 6 5 4 29 29 N 1.28759 * 109.52439 * 359.58656 * 28 6 5 30 30 H 1.09004 * 109.46995 * 60.00082 * 1 2 3 31 31 H 1.09001 * 109.47754 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47640 * 300.00306 * 1 2 3 33 33 H 1.09005 * 109.47122 * 239.99603 * 2 1 3 34 34 H 1.09004 * 109.46995 * 119.99918 * 2 1 3 35 35 H 1.08997 * 109.47075 * 59.99925 * 3 2 1 36 36 H 1.08992 * 109.47351 * 299.99794 * 3 2 1 37 37 H 1.08010 * 126.57861 * 359.97438 * 5 4 3 38 38 H 1.09004 * 109.58700 * 6.57194 * 10 9 7 39 39 H 1.09005 * 109.57990 * 246.15080 * 10 9 7 40 40 H 1.09005 * 109.49654 * 174.58386 * 11 10 9 41 41 H 1.09002 * 109.49770 * 294.67610 * 11 10 9 42 42 H 1.08996 * 109.45717 * 58.65674 * 12 11 10 43 43 H 1.09003 * 109.45616 * 178.61442 * 12 11 10 44 44 H 1.09008 * 109.46747 * 59.99612 * 15 13 12 45 45 H 1.08997 * 109.47714 * 179.97438 * 15 13 12 46 46 H 1.09001 * 109.47082 * 300.00872 * 15 13 12 47 47 H 1.09002 * 109.46720 * 187.16834 * 18 16 9 48 48 H 1.08995 * 109.46924 * 307.17002 * 18 16 9 49 49 H 0.97001 * 120.00381 * 355.56241 * 19 18 16 50 50 H 0.97004 * 119.99891 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.3091 2.0631 -0.8858 6 6 5.5945 1.7987 -0.5068 7 6 6.8109 2.2773 -1.1905 8 8 6.7210 3.0746 -2.1041 9 7 8.0219 1.8309 -0.8025 10 6 8.1402 0.7598 0.1963 11 6 9.0162 -0.3571 -0.3797 12 6 10.3547 0.2315 -0.8316 13 6 10.1126 1.2701 -1.9291 14 1 9.5981 0.8004 -2.7675 15 6 11.4534 1.8343 -2.4032 16 6 9.2489 2.4055 -1.3706 17 1 9.7992 2.9343 -0.5923 18 6 8.8871 3.3762 -2.4966 19 7 8.1941 4.5385 -1.9354 20 6 7.8517 5.5884 -2.7452 21 1 8.0930 5.5597 -3.7975 22 6 7.1946 6.6895 -2.2136 23 7 6.9002 6.7243 -0.9312 24 14 6.7283 8.1219 -3.3181 25 1 5.8185 7.6444 -4.3904 26 1 6.0407 9.1638 -2.5139 27 1 7.9542 8.6960 -3.9286 28 7 5.5636 1.0240 0.5911 29 7 4.3405 0.7972 0.9235 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9968 2.6557 -1.7330 38 1 7.1507 0.3655 0.4281 39 1 8.6001 1.1544 1.1024 40 1 9.1912 -1.1135 0.3854 41 1 8.5121 -0.8116 -1.2327 42 1 10.8469 0.7074 0.0166 43 1 10.9894 -0.5654 -1.2193 44 1 12.0687 1.0256 -2.7978 45 1 11.2806 2.5736 -3.1852 46 1 11.9665 2.3050 -1.5645 47 1 9.7967 3.7037 -3.0002 48 1 8.2355 2.8754 -3.2126 49 1 7.9777 4.5645 -0.9902 50 1 6.4413 7.4939 -0.5596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753810786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:55 Heat of formation + Delta-G solvation = 92.436716 kcal Electronic energy + Delta-G solvation = -30700.698590 eV Core-core repulsion = 26766.379059 eV Total energy + Delta-G solvation = -3934.319532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.22539 -41.29279 -38.41317 -37.02481 -36.25973 -34.75998 -33.65135 -33.48750 -32.01927 -31.61957 -28.69785 -27.81956 -27.01532 -25.87205 -24.46345 -23.80350 -23.47015 -22.38960 -22.14511 -21.22329 -20.37105 -19.12312 -18.18578 -17.23411 -17.14698 -16.90090 -16.62380 -16.18860 -15.87906 -15.67338 -15.47310 -15.30266 -15.18757 -14.93847 -14.57064 -14.35533 -14.02353 -13.85527 -13.68170 -13.60848 -13.33904 -13.13600 -12.97114 -12.91750 -12.77573 -12.71594 -12.64854 -12.39142 -12.26381 -12.07200 -11.90517 -11.76730 -11.74148 -11.58375 -11.30967 -11.11687 -10.90314 -10.84844 -10.24087 -10.00589 -9.40327 -8.55223 -7.79515 -4.98528 0.19212 0.76577 1.12756 1.46178 1.50384 1.55883 2.14590 2.50496 2.65028 3.25946 3.35048 3.53639 3.72536 3.79348 3.81470 3.89039 4.03129 4.07441 4.15265 4.18699 4.21957 4.33500 4.38044 4.45394 4.46431 4.54960 4.58997 4.67787 4.77331 4.81932 4.87249 4.92574 4.96326 5.03206 5.09568 5.13424 5.15174 5.25949 5.29234 5.32137 5.34216 5.41186 5.44413 5.52448 5.55500 5.59063 5.93597 6.40103 6.62226 6.94686 7.45551 7.51648 8.25168 8.49122 9.44918 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.004871 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.837597 B = 5746.373810 C = 8866.633988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.109 3.891 4 N -0.346 5.346 5 C 0.092 3.908 6 C -0.107 4.107 7 C 0.555 3.445 8 O -0.492 6.492 9 N -0.602 5.602 10 C 0.084 3.916 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.090 4.090 14 H 0.067 0.933 15 C -0.142 4.142 16 C 0.152 3.848 17 H 0.056 0.944 18 C 0.165 3.835 19 N -0.702 5.702 20 C -0.209 4.209 21 H 0.064 0.936 22 C -0.082 4.082 23 N -0.975 5.975 24 Si 0.967 3.033 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.280 1.280 28 N -0.219 5.219 29 N -0.086 5.086 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.214 0.786 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.024 0.976 49 H 0.365 0.635 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -19.545 2.060 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.010 4.010 4 N -0.132 5.132 5 C -0.065 4.065 6 C -0.246 4.246 7 C 0.339 3.661 8 O -0.363 6.363 9 N -0.337 5.337 10 C -0.039 4.039 11 C -0.163 4.163 12 C -0.145 4.145 13 C -0.110 4.110 14 H 0.085 0.915 15 C -0.200 4.200 16 C 0.049 3.951 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.343 5.343 20 C -0.341 4.341 21 H 0.082 0.918 22 C -0.273 4.273 23 N -0.628 5.628 24 Si 0.797 3.203 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.207 1.207 28 N -0.093 5.093 29 N -0.066 5.066 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.230 0.770 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.041 0.959 49 H 0.197 0.803 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.916 -19.885 2.629 20.913 hybrid contribution -0.616 1.911 -0.851 2.180 sum -6.532 -17.975 1.778 19.207 Atomic orbital electron populations 1.21683 0.92191 1.03250 1.03154 1.21760 0.98180 0.93622 1.03173 1.22624 0.70245 1.01093 1.07057 1.50693 1.09809 1.34079 1.18595 1.23556 0.89880 0.96449 0.96599 1.21716 0.95389 1.08208 0.99287 1.17294 0.82574 0.81505 0.84727 1.91199 1.85361 1.30963 1.28737 1.47704 1.04175 1.38581 1.43236 1.22534 1.04315 0.87304 0.89773 1.21883 0.95687 0.97289 1.01423 1.21575 0.97210 0.97959 0.97749 1.21419 0.96001 0.94985 0.98610 0.91486 1.21818 0.95533 1.01371 1.01263 1.21453 0.84798 0.93874 0.94980 0.92560 1.20963 0.93172 0.87342 0.94650 1.42385 1.67760 1.16428 1.07710 1.19460 1.27775 0.94984 0.91917 0.91790 1.25339 1.03394 1.01335 0.97239 1.69845 1.49256 1.31056 1.12643 0.85286 0.77886 0.79377 0.77725 1.21050 1.22387 1.20692 1.74294 1.12653 1.11573 1.10732 1.81750 0.93850 1.18477 1.12490 0.91303 0.91315 0.91481 0.91720 0.91329 0.87221 0.85293 0.76976 0.86129 0.92466 0.88613 0.92364 0.91540 0.89446 0.90216 0.93324 0.92399 0.95990 0.95870 0.80335 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.66 6.14 30.59 0.19 -1.48 16 3 C 0.11 1.64 6.54 86.38 0.56 2.20 16 4 N -0.35 -8.79 3.69 -347.10 -1.28 -10.07 16 5 C 0.09 2.84 11.28 83.85 0.95 3.79 16 6 C -0.11 -3.92 6.70 40.81 0.27 -3.65 16 7 C 0.55 23.47 6.96 86.69 0.60 24.08 16 8 O -0.49 -24.75 10.55 -4.01 -0.04 -24.79 16 9 N -0.60 -22.11 2.97 -798.76 -2.37 -24.49 16 10 C 0.08 2.46 6.10 86.36 0.53 2.99 16 11 C -0.12 -2.76 6.08 30.67 0.19 -2.58 16 12 C -0.11 -2.27 5.17 30.62 0.16 -2.11 16 13 C -0.09 -2.43 2.34 -10.72 -0.03 -2.46 16 14 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.14 -3.39 8.97 71.98 0.65 -2.74 16 16 C 0.15 5.56 2.41 44.98 0.11 5.66 16 17 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 18 C 0.16 7.48 4.76 86.38 0.41 7.89 16 19 N -0.70 -39.26 3.17 -343.45 -1.09 -40.35 16 20 C -0.21 -12.63 9.63 84.03 0.81 -11.82 16 21 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 23 N -0.97 -63.52 13.06 21.65 0.28 -63.24 16 24 Si 0.97 49.22 29.55 68.60 2.03 51.25 16 25 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 28 N -0.22 -7.47 8.77 -50.00 -0.44 -7.91 16 29 N -0.09 -2.62 13.65 37.02 0.51 -2.12 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.21 5.91 8.06 -2.91 -0.02 5.88 16 38 H 0.12 3.72 4.08 -42.34 -0.17 3.55 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 40 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.05 1.31 6.48 -2.39 -0.02 1.29 16 46 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.02 0.99 6.34 -2.39 -0.02 0.97 16 48 H 0.02 1.15 6.45 -2.39 -0.02 1.13 16 49 H 0.37 22.17 6.91 -92.71 -0.64 21.53 16 50 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.96 389.89 4.30 -74.66 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.13 Total: 32.37 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.58 Total: 14.69 kcal Atomic # 7 Polarization: -143.78 SS G_CDS: -4.40 Total: -148.17 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -78.96 4.30 -74.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753810786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.095 kcal (2) G-P(sol) polarization free energy of solvation -78.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds