Wall clock time and date at job start Tue Mar 31 2020 19:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 N 1.46494 * 109.47418 * 180.02562 * 3 2 1 5 5 C 1.34814 * 126.59698 * 124.99427 * 4 3 2 6 6 C 1.36594 * 106.84199 * 180.02562 * 5 4 3 7 7 C 1.47524 * 125.76962 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99991 * 7.14058 * 7 6 5 9 9 N 1.34772 * 120.00092 * 187.13165 * 7 6 5 10 10 C 1.46927 * 120.62999 * 6.27493 * 9 7 6 11 11 C 1.53189 * 108.77888 * 233.60553 * 10 9 7 12 12 C 1.53039 * 109.31217 * 305.36739 * 11 10 9 13 13 C 1.53041 * 109.54254 * 61.36091 * 12 11 10 14 14 H 1.09007 * 109.49660 * 58.58499 * 13 12 11 15 15 C 1.53000 * 109.52644 * 178.66711 * 13 12 11 16 16 C 1.46932 * 120.63317 * 186.27422 * 9 7 6 17 17 H 1.09002 * 109.58387 * 246.18056 * 16 9 7 18 18 C 1.52991 * 109.58496 * 6.60545 * 16 9 7 19 19 N 1.46501 * 109.47276 * 286.45295 * 18 16 9 20 20 C 1.36939 * 120.00304 * 175.64095 * 19 18 16 21 21 H 1.08004 * 119.99365 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00296 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99736 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99718 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 90.00363 * 24 22 20 26 26 H 1.48502 * 109.46983 * 210.00137 * 24 22 20 27 27 H 1.48495 * 109.47392 * 330.00046 * 24 22 20 28 28 N 1.34398 * 108.45701 * 0.24671 * 6 5 4 29 29 N 1.28760 * 109.52249 * 359.58605 * 28 6 5 30 30 H 1.09002 * 109.46735 * 299.99343 * 1 2 3 31 31 H 1.08993 * 109.47530 * 59.99726 * 1 2 3 32 32 H 1.09000 * 109.46852 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47134 * 240.00641 * 2 1 3 34 34 H 1.08999 * 109.47696 * 119.99864 * 2 1 3 35 35 H 1.09001 * 109.46957 * 59.99979 * 3 2 1 36 36 H 1.09005 * 109.47063 * 300.00745 * 3 2 1 37 37 H 1.08010 * 126.58031 * 0.02562 * 5 4 3 38 38 H 1.09001 * 109.58420 * 113.81681 * 10 9 7 39 39 H 1.08998 * 109.70363 * 353.46421 * 10 9 7 40 40 H 1.08995 * 109.50307 * 185.41007 * 11 10 9 41 41 H 1.09001 * 109.49682 * 65.31242 * 11 10 9 42 42 H 1.09003 * 109.45733 * 301.34025 * 12 11 10 43 43 H 1.09003 * 109.46085 * 181.38409 * 12 11 10 44 44 H 1.08998 * 109.46821 * 179.85797 * 15 13 12 45 45 H 1.08997 * 109.46947 * 299.85771 * 15 13 12 46 46 H 1.09000 * 109.46772 * 59.85767 * 15 13 12 47 47 H 1.09002 * 109.47547 * 46.45164 * 18 16 9 48 48 H 1.09000 * 109.46937 * 166.45378 * 18 16 9 49 49 H 0.96998 * 119.99923 * 355.63841 * 19 18 16 50 50 H 0.97007 * 119.99624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3082 2.0636 -0.8875 6 6 5.5939 1.7984 -0.5102 7 6 6.8097 2.2769 -1.1952 8 8 6.7191 3.0756 -2.1077 9 7 8.0210 1.8291 -0.8095 10 6 8.1401 0.7643 0.1959 11 6 9.0647 1.2467 1.3179 12 6 10.3985 1.6956 0.7168 13 6 10.1597 2.8604 -0.2467 14 1 9.6842 3.6830 0.2877 15 6 11.4971 3.3306 -0.8222 16 6 9.2475 2.3963 -1.3865 17 1 9.7588 1.6362 -1.9773 18 6 8.8917 3.5886 -2.2767 19 7 8.2847 3.1061 -3.5197 20 6 7.8010 3.9999 -4.4375 21 1 7.8666 5.0605 -4.2448 22 6 7.2254 3.5427 -5.6150 23 7 6.7610 4.4018 -6.4973 24 14 7.1112 1.7081 -5.9479 25 1 5.8290 1.1863 -5.4103 26 1 7.1692 1.4662 -7.4119 27 1 8.2447 1.0135 -5.2861 28 7 5.5640 1.0229 0.5870 29 7 4.3412 0.7964 0.9207 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8935 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.9952 2.6569 -1.7341 38 1 8.5610 -0.1288 -0.2659 39 1 7.1567 0.5345 0.6061 40 1 9.2383 0.4327 2.0216 41 1 8.5996 2.0845 1.8376 42 1 10.8513 0.8643 0.1763 43 1 11.0673 2.0164 1.5156 44 1 11.3256 4.1585 -1.5101 45 1 12.1457 3.6607 -0.0108 46 1 11.9726 2.5074 -1.3555 47 1 8.1856 4.2342 -1.7544 48 1 9.7958 4.1515 -2.5085 49 1 8.2254 2.1535 -3.6926 50 1 6.3584 4.0823 -7.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753810788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:05 Heat of formation + Delta-G solvation = 118.764532 kcal Electronic energy + Delta-G solvation = -30772.409430 eV Core-core repulsion = 26839.231558 eV Total energy + Delta-G solvation = -3933.177872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18071 -39.99484 -37.17348 -36.24627 -34.67365 -33.50189 -32.66017 -32.03287 -30.78247 -30.35524 -27.69301 -26.86557 -25.92608 -24.27094 -23.14829 -22.65831 -22.03955 -21.52932 -20.84494 -20.11296 -19.21412 -17.58613 -16.97854 -16.26351 -16.11041 -15.67018 -15.32750 -14.88433 -14.79820 -14.55325 -14.13638 -13.96992 -13.91202 -13.82638 -13.23643 -13.14467 -12.83893 -12.70521 -12.57791 -12.44119 -12.33235 -12.10004 -12.06500 -11.88608 -11.69524 -11.60342 -11.36985 -11.22013 -10.90811 -10.85357 -10.72595 -10.52631 -10.38046 -10.12179 -9.92946 -9.71692 -9.35155 -9.14677 -8.63867 -8.60671 -8.02714 -6.74309 -5.50906 -2.76165 1.21631 1.92756 1.99764 3.35155 3.50455 3.55093 3.57196 3.78998 4.07590 4.32371 4.37064 4.63160 4.77313 4.81985 4.84770 4.89133 4.92379 4.99295 5.08413 5.12799 5.17203 5.19698 5.37028 5.44526 5.51470 5.55444 5.63205 5.66431 5.73990 5.77104 5.79223 5.81835 5.88134 5.92620 5.92979 6.02249 6.13882 6.25128 6.28973 6.36996 6.39380 6.50149 6.56004 6.75840 6.93768 7.26330 7.86381 8.06293 8.24998 8.67098 8.83630 9.48921 10.22516 10.44335 11.69490 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.004987 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.005850 B = 5613.783953 C = 8306.580038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.361 5.361 5 C 0.089 3.911 6 C -0.084 4.084 7 C 0.556 3.444 8 O -0.439 6.439 9 N -0.602 5.602 10 C 0.074 3.926 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.147 4.147 16 C 0.144 3.856 17 H 0.067 0.933 18 C 0.165 3.835 19 N -0.723 5.723 20 C -0.195 4.195 21 H 0.085 0.915 22 C -0.007 4.007 23 N -0.948 5.948 24 Si 0.882 3.118 25 H -0.291 1.291 26 H -0.297 1.297 27 H -0.283 1.283 28 N -0.213 5.213 29 N -0.077 5.077 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.205 0.795 38 H 0.052 0.948 39 H 0.137 0.863 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.355 0.645 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 -8.792 18.957 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.147 5.147 5 C -0.067 4.067 6 C -0.224 4.224 7 C 0.339 3.661 8 O -0.306 6.306 9 N -0.337 5.337 10 C -0.050 4.050 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.118 4.118 14 H 0.092 0.908 15 C -0.204 4.204 16 C 0.041 3.959 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.366 5.366 20 C -0.326 4.326 21 H 0.103 0.897 22 C -0.200 4.200 23 N -0.599 5.599 24 Si 0.714 3.286 25 H -0.219 1.219 26 H -0.224 1.224 27 H -0.209 1.209 28 N -0.085 5.085 29 N -0.057 5.057 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.222 0.778 38 H 0.071 0.929 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.043 0.957 49 H 0.188 0.812 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.403 -8.981 19.565 22.195 hybrid contribution -0.378 -0.905 -1.142 1.505 sum -5.782 -9.886 18.423 21.693 Atomic orbital electron populations 1.21703 0.93940 1.02756 1.02367 1.21826 0.96884 0.94736 1.04144 1.22127 0.72815 0.99906 1.05123 1.50432 1.08568 1.35547 1.20192 1.23489 0.90217 0.97118 0.95866 1.21935 0.95355 1.06682 0.98388 1.17131 0.81407 0.84132 0.83430 1.91404 1.84619 1.30668 1.23945 1.47685 1.04791 1.38645 1.42626 1.22608 1.04633 0.88960 0.88830 1.21830 0.95768 1.01185 0.97803 1.21606 0.97119 0.98023 0.98434 1.21453 0.96082 0.98060 0.96156 0.90810 1.21862 0.95894 1.01827 1.00865 1.21570 0.84107 0.96801 0.93437 0.91493 1.20890 0.95356 0.92997 0.87003 1.42554 1.71671 1.04471 1.17943 1.18977 1.28296 0.90400 0.94925 0.89686 1.24500 1.02009 0.96071 0.97422 1.69701 1.47607 1.31931 1.10660 0.86557 0.77473 0.88089 0.76433 1.21875 1.22379 1.20948 1.74075 1.11833 1.11251 1.11375 1.81867 0.93858 1.17765 1.12170 0.92150 0.92125 0.91738 0.91013 0.90150 0.88513 0.87649 0.77785 0.92928 0.84601 0.91400 0.91795 0.92070 0.92118 0.91455 0.92848 0.92671 0.93543 0.95675 0.81246 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.96 6.14 -26.73 -0.16 -1.13 16 3 C 0.12 0.90 6.54 -4.04 -0.03 0.88 16 4 N -0.36 -4.27 3.69 -61.06 -0.23 -4.50 16 5 C 0.09 1.25 11.28 -16.84 -0.19 1.06 16 6 C -0.08 -1.38 6.74 -83.55 -0.56 -1.95 16 7 C 0.56 10.58 7.41 -12.48 -0.09 10.48 16 8 O -0.44 -10.07 10.34 5.28 0.05 -10.02 16 9 N -0.60 -10.14 2.97 -166.45 -0.49 -10.64 16 10 C 0.07 1.03 6.31 -3.71 -0.02 1.00 16 11 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 12 C -0.11 -1.30 5.17 -26.69 -0.14 -1.44 16 13 C -0.10 -1.31 2.34 -90.50 -0.21 -1.52 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 15 C -0.15 -1.79 8.99 37.16 0.33 -1.46 16 16 C 0.14 2.43 2.37 -67.60 -0.16 2.27 16 17 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 18 C 0.16 3.44 4.85 -4.05 -0.02 3.42 16 19 N -0.72 -18.32 3.08 -59.91 -0.18 -18.51 16 20 C -0.20 -5.81 9.69 -15.06 -0.15 -5.95 16 21 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.95 -31.06 13.97 55.49 0.78 -30.28 16 24 Si 0.88 23.77 27.73 -169.99 -4.71 19.06 16 25 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 26 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 27 H -0.28 -7.30 6.52 56.52 0.37 -6.93 16 28 N -0.21 -3.24 8.71 32.85 0.29 -2.95 16 29 N -0.08 -1.08 13.65 60.35 0.82 -0.26 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.21 2.63 8.06 -52.48 -0.42 2.20 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.14 1.97 3.68 -119.91 -0.44 1.53 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.05 1.06 6.37 -51.93 -0.33 0.73 16 48 H 0.03 0.53 6.13 -51.93 -0.32 0.21 16 49 H 0.36 9.12 5.47 -40.82 -0.22 8.89 16 50 H 0.25 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -35.99 386.84 -7.56 -43.55 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.42 Total: 5.38 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.29 Total: 3.33 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.98 Total: -67.13 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.05 Total: -10.02 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.71 Total: 19.06 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.99 -7.56 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753810788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.316 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds