Wall clock time and date at job start Tue Mar 31 2020 19:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46869 * 2 1 4 4 N 1.46494 * 109.47418 * 180.02562 * 3 2 1 5 5 C 1.34814 * 126.59698 * 124.99427 * 4 3 2 6 6 C 1.36594 * 106.84199 * 180.02562 * 5 4 3 7 7 C 1.47524 * 125.76962 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99991 * 7.14058 * 7 6 5 9 9 N 1.34772 * 120.00092 * 187.13165 * 7 6 5 10 10 C 1.46927 * 120.62999 * 6.27493 * 9 7 6 11 11 C 1.53189 * 108.77888 * 233.60553 * 10 9 7 12 12 C 1.53039 * 109.31217 * 305.36739 * 11 10 9 13 13 C 1.53041 * 109.54254 * 61.36091 * 12 11 10 14 14 H 1.09007 * 109.49660 * 58.58499 * 13 12 11 15 15 C 1.53000 * 109.52644 * 178.66711 * 13 12 11 16 16 C 1.46932 * 120.63317 * 186.27422 * 9 7 6 17 17 H 1.09002 * 109.58387 * 246.18056 * 16 9 7 18 18 C 1.52991 * 109.58496 * 6.60545 * 16 9 7 19 19 N 1.46501 * 109.47276 * 286.45295 * 18 16 9 20 20 C 1.36939 * 120.00304 * 175.64095 * 19 18 16 21 21 H 1.08004 * 119.99365 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00296 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99736 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99718 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 90.00363 * 24 22 20 26 26 H 1.48502 * 109.46983 * 210.00137 * 24 22 20 27 27 H 1.48495 * 109.47392 * 330.00046 * 24 22 20 28 28 N 1.34398 * 108.45701 * 0.24671 * 6 5 4 29 29 N 1.28760 * 109.52249 * 359.58605 * 28 6 5 30 30 H 1.09002 * 109.46735 * 299.99343 * 1 2 3 31 31 H 1.08993 * 109.47530 * 59.99726 * 1 2 3 32 32 H 1.09000 * 109.46852 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47134 * 240.00641 * 2 1 3 34 34 H 1.08999 * 109.47696 * 119.99864 * 2 1 3 35 35 H 1.09001 * 109.46957 * 59.99979 * 3 2 1 36 36 H 1.09005 * 109.47063 * 300.00745 * 3 2 1 37 37 H 1.08010 * 126.58031 * 0.02562 * 5 4 3 38 38 H 1.09001 * 109.58420 * 113.81681 * 10 9 7 39 39 H 1.08998 * 109.70363 * 353.46421 * 10 9 7 40 40 H 1.08995 * 109.50307 * 185.41007 * 11 10 9 41 41 H 1.09001 * 109.49682 * 65.31242 * 11 10 9 42 42 H 1.09003 * 109.45733 * 301.34025 * 12 11 10 43 43 H 1.09003 * 109.46085 * 181.38409 * 12 11 10 44 44 H 1.08998 * 109.46821 * 179.85797 * 15 13 12 45 45 H 1.08997 * 109.46947 * 299.85771 * 15 13 12 46 46 H 1.09000 * 109.46772 * 59.85767 * 15 13 12 47 47 H 1.09002 * 109.47547 * 46.45164 * 18 16 9 48 48 H 1.09000 * 109.46937 * 166.45378 * 18 16 9 49 49 H 0.96998 * 119.99923 * 355.63841 * 19 18 16 50 50 H 0.97007 * 119.99624 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3082 2.0636 -0.8875 6 6 5.5939 1.7984 -0.5102 7 6 6.8097 2.2769 -1.1952 8 8 6.7191 3.0756 -2.1077 9 7 8.0210 1.8291 -0.8095 10 6 8.1401 0.7643 0.1959 11 6 9.0647 1.2467 1.3179 12 6 10.3985 1.6956 0.7168 13 6 10.1597 2.8604 -0.2467 14 1 9.6842 3.6830 0.2877 15 6 11.4971 3.3306 -0.8222 16 6 9.2475 2.3963 -1.3865 17 1 9.7588 1.6362 -1.9773 18 6 8.8917 3.5886 -2.2767 19 7 8.2847 3.1061 -3.5197 20 6 7.8010 3.9999 -4.4375 21 1 7.8666 5.0605 -4.2448 22 6 7.2254 3.5427 -5.6150 23 7 6.7610 4.4018 -6.4973 24 14 7.1112 1.7081 -5.9479 25 1 5.8290 1.1863 -5.4103 26 1 7.1692 1.4662 -7.4119 27 1 8.2447 1.0135 -5.2861 28 7 5.5640 1.0229 0.5870 29 7 4.3412 0.7964 0.9207 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8935 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.9952 2.6569 -1.7341 38 1 8.5610 -0.1288 -0.2659 39 1 7.1567 0.5345 0.6061 40 1 9.2383 0.4327 2.0216 41 1 8.5996 2.0845 1.8376 42 1 10.8513 0.8643 0.1763 43 1 11.0673 2.0164 1.5156 44 1 11.3256 4.1585 -1.5101 45 1 12.1457 3.6607 -0.0108 46 1 11.9726 2.5074 -1.3555 47 1 8.1856 4.2342 -1.7544 48 1 9.7958 4.1515 -2.5085 49 1 8.2254 2.1535 -3.6926 50 1 6.3584 4.0823 -7.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753810788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:04 Heat of formation + Delta-G solvation = 94.902892 kcal Electronic energy + Delta-G solvation = -30773.444148 eV Core-core repulsion = 26839.231558 eV Total energy + Delta-G solvation = -3934.212590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.30187 -41.34480 -38.48001 -37.08843 -36.42668 -34.80302 -33.74683 -33.53966 -32.30364 -31.78946 -28.87093 -27.93695 -27.05517 -25.84136 -24.31027 -23.81724 -23.46905 -22.42554 -22.23034 -21.23127 -20.50037 -19.48219 -18.28395 -17.32227 -17.20962 -16.95021 -16.63619 -16.20624 -15.89805 -15.87281 -15.77829 -15.37219 -15.09836 -14.71490 -14.66040 -14.40529 -14.10887 -14.08531 -13.79233 -13.63820 -13.46094 -13.21828 -13.08657 -13.01840 -12.90869 -12.81598 -12.67103 -12.40998 -12.19474 -12.12271 -11.89094 -11.79320 -11.74337 -11.62843 -11.32434 -11.16830 -10.92695 -10.84299 -10.30357 -10.15338 -9.44597 -8.86244 -7.88471 -5.10423 0.12986 0.67549 1.06788 1.33653 1.36987 1.44352 2.06517 2.39982 2.56200 3.16926 3.30395 3.43604 3.62662 3.68628 3.79391 3.85473 3.98448 4.03197 4.11459 4.12944 4.16974 4.25493 4.27971 4.35175 4.43634 4.50172 4.55547 4.61768 4.74851 4.77739 4.82888 4.90573 4.94256 5.00941 5.08073 5.12365 5.12695 5.24895 5.26367 5.28705 5.29438 5.41883 5.44695 5.49219 5.56360 5.86121 5.89490 6.33791 6.53153 6.89351 7.22272 7.42320 8.00783 8.20568 9.35485 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.004987 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.005850 B = 5613.783953 C = 8306.580038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.345 5.345 5 C 0.092 3.908 6 C -0.110 4.110 7 C 0.556 3.444 8 O -0.495 6.495 9 N -0.600 5.600 10 C 0.069 3.931 11 C -0.121 4.121 12 C -0.108 4.108 13 C -0.091 4.091 14 H 0.065 0.935 15 C -0.144 4.144 16 C 0.148 3.852 17 H 0.067 0.933 18 C 0.168 3.832 19 N -0.721 5.721 20 C -0.178 4.178 21 H 0.048 0.952 22 C -0.072 4.072 23 N -0.995 5.995 24 Si 0.950 3.050 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.265 1.265 28 N -0.215 5.215 29 N -0.081 5.081 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.213 0.787 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.355 0.645 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -11.115 21.327 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.130 5.130 5 C -0.065 4.065 6 C -0.249 4.249 7 C 0.340 3.660 8 O -0.367 6.367 9 N -0.335 5.335 10 C -0.054 4.054 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.111 4.111 14 H 0.083 0.917 15 C -0.201 4.201 16 C 0.045 3.955 17 H 0.085 0.915 18 C 0.042 3.958 19 N -0.364 5.364 20 C -0.309 4.309 21 H 0.066 0.934 22 C -0.261 4.261 23 N -0.650 5.650 24 Si 0.780 3.220 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.190 1.190 28 N -0.087 5.087 29 N -0.060 5.060 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.046 0.954 49 H 0.187 0.813 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.253 -11.352 22.028 25.332 hybrid contribution -0.512 -0.134 -1.727 1.806 sum -5.765 -11.487 20.301 24.027 Atomic orbital electron populations 1.21680 0.92166 1.03199 1.03244 1.21778 0.98275 0.93991 1.03014 1.22643 0.70131 1.00845 1.07333 1.50714 1.09869 1.33814 1.18653 1.23613 0.89958 0.96819 0.96142 1.21694 0.95180 1.08515 0.99543 1.17504 0.82585 0.83086 0.82816 1.91369 1.85501 1.33238 1.26575 1.47859 1.04171 1.38807 1.42641 1.22814 1.05401 0.88337 0.88871 1.21801 0.95198 1.01764 0.97174 1.21587 0.97361 0.97111 0.98465 1.21416 0.95646 0.98838 0.95182 0.91684 1.21838 0.95581 1.01348 1.01365 1.21514 0.84784 0.94965 0.94226 0.91507 1.20907 0.94211 0.94727 0.85962 1.42477 1.71620 1.03658 1.18643 1.18882 1.27030 0.89475 0.95556 0.93435 1.25178 1.02729 1.00739 0.97467 1.69878 1.49562 1.34186 1.11345 0.85453 0.77942 0.82535 0.76045 1.21608 1.22460 1.19011 1.74062 1.12501 1.11203 1.10965 1.81786 0.93791 1.17860 1.12594 0.91014 0.91509 0.91559 0.92387 0.91048 0.86317 0.85483 0.77049 0.92062 0.84897 0.88729 0.92625 0.91234 0.89694 0.93352 0.90387 0.92061 0.95707 0.95386 0.81269 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.61 6.14 30.60 0.19 -1.42 16 3 C 0.11 1.38 6.54 86.38 0.56 1.95 16 4 N -0.34 -7.67 3.69 -347.10 -1.28 -8.95 16 5 C 0.09 2.54 11.28 83.85 0.95 3.48 16 6 C -0.11 -3.59 6.74 40.82 0.28 -3.32 16 7 C 0.56 21.41 7.41 86.69 0.64 22.05 16 8 O -0.50 -23.52 10.34 -4.03 -0.04 -23.56 16 9 N -0.60 -19.89 2.97 -798.77 -2.37 -22.26 16 10 C 0.07 1.78 6.31 86.36 0.54 2.32 16 11 C -0.12 -2.46 6.08 30.67 0.19 -2.27 16 12 C -0.11 -2.07 5.17 30.62 0.16 -1.91 16 13 C -0.09 -2.28 2.34 -10.72 -0.03 -2.30 16 14 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 15 C -0.14 -3.22 8.99 71.98 0.65 -2.58 16 16 C 0.15 4.92 2.37 44.97 0.11 5.02 16 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.17 7.22 4.85 86.38 0.42 7.63 16 19 N -0.72 -37.34 3.08 -343.46 -1.06 -38.40 16 20 C -0.18 -10.96 9.69 84.03 0.81 -10.15 16 21 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 22 C -0.07 -4.54 5.50 84.86 0.47 -4.08 16 23 N -1.00 -67.47 13.97 21.65 0.30 -67.17 16 24 Si 0.95 50.06 27.73 68.60 1.90 51.96 16 25 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 26 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 27 H -0.26 -12.96 6.52 99.48 0.65 -12.31 16 28 N -0.21 -6.34 8.71 -50.00 -0.44 -6.77 16 29 N -0.08 -2.14 13.65 37.02 0.51 -1.64 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 1.11 8.08 -2.38 -0.02 1.09 16 37 H 0.21 5.45 8.06 -2.91 -0.02 5.43 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.13 3.65 3.68 -90.35 -0.33 3.31 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.26 6.36 -2.39 -0.02 1.24 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 47 H 0.03 1.19 6.37 -2.39 -0.02 1.18 16 48 H 0.03 1.20 6.13 -2.39 -0.01 1.19 16 49 H 0.36 18.23 5.47 -92.71 -0.51 17.72 16 50 H 0.25 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -81.12 386.84 4.22 -76.90 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.05 Total: 25.88 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.65 Total: 14.01 kcal Atomic # 7 Polarization: -140.85 SS G_CDS: -4.34 Total: -145.19 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.96 kcal Total: -81.12 4.22 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753810788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.804 kcal (2) G-P(sol) polarization free energy of solvation -81.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds