Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47102 * 2 1 4 4 N 1.46498 * 109.47375 * 179.97438 * 3 2 1 5 5 C 1.34809 * 126.59536 * 125.26703 * 4 3 2 6 6 C 1.36595 * 106.84242 * 180.15371 * 5 4 3 7 7 C 1.47525 * 125.77191 * 179.90049 * 6 5 4 8 8 O 1.21589 * 119.99711 * 7.26143 * 7 6 5 9 9 N 1.34774 * 119.99715 * 187.26332 * 7 6 5 10 10 C 1.46921 * 120.63332 * 6.52798 * 9 7 6 11 11 C 1.53197 * 108.77906 * 233.58581 * 10 9 7 12 12 C 1.53041 * 109.31221 * 305.36809 * 11 10 9 13 13 C 1.52997 * 109.46243 * 181.38361 * 12 11 10 14 14 C 1.53000 * 109.47225 * 60.63029 * 13 12 11 15 15 N 1.46506 * 109.45576 * 301.35596 * 12 11 10 16 16 C 1.36944 * 119.99582 * 184.82763 * 15 12 11 17 17 H 1.08000 * 120.00050 * 354.96854 * 16 15 12 18 18 C 1.38806 * 119.99536 * 174.96504 * 16 15 12 19 19 N 1.31616 * 120.00395 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99865 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47291 * 90.00075 * 20 18 16 22 22 H 1.48494 * 109.46910 * 210.00312 * 20 18 16 23 23 H 1.48509 * 109.46788 * 330.00048 * 20 18 16 24 24 C 1.53037 * 109.52760 * 61.36269 * 12 11 10 25 25 C 1.46929 * 120.62911 * 186.50510 * 9 7 6 26 26 N 1.34405 * 108.45794 * 359.64124 * 6 5 4 27 27 N 1.28762 * 109.51774 * 0.22281 * 26 6 5 28 28 H 1.08997 * 109.46935 * 300.00033 * 1 2 3 29 29 H 1.09001 * 109.46915 * 60.00068 * 1 2 3 30 30 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47083 * 240.00443 * 2 1 3 32 32 H 1.09001 * 109.46915 * 119.99932 * 2 1 3 33 33 H 1.09009 * 109.46928 * 59.99937 * 3 2 1 34 34 H 1.08997 * 109.47148 * 300.00531 * 3 2 1 35 35 H 1.08002 * 126.57991 * 0.02562 * 5 4 3 36 36 H 1.09005 * 109.59017 * 113.79742 * 10 9 7 37 37 H 1.09000 * 109.58652 * 353.37424 * 10 9 7 38 38 H 1.08994 * 109.49985 * 185.41447 * 11 10 9 39 39 H 1.09000 * 109.49684 * 65.31484 * 11 10 9 40 40 H 1.08998 * 109.47439 * 180.63768 * 13 12 11 41 41 H 1.09003 * 109.46504 * 300.63630 * 13 12 11 42 42 H 1.08997 * 109.46962 * 304.75931 * 14 13 12 43 43 H 1.09001 * 109.46744 * 64.75734 * 14 13 12 44 44 H 1.08995 * 109.47060 * 184.75236 * 14 13 12 45 45 H 0.96995 * 120.00537 * 4.82435 * 15 12 11 46 46 H 0.97005 * 120.00491 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.49523 * 58.58735 * 24 12 11 48 48 H 1.09003 * 109.50115 * 178.67371 * 24 12 11 49 49 H 1.09003 * 109.58628 * 246.20255 * 25 9 7 50 50 H 1.09001 * 109.58695 * 6.62431 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0674 -0.8828 6 6 5.5945 1.7982 -0.5074 7 6 6.8109 2.2775 -1.1907 8 8 6.7214 3.0821 -2.0979 9 7 8.0212 1.8236 -0.8093 10 6 8.1382 0.7482 0.1849 11 6 9.0637 1.2172 1.3120 12 6 10.3985 1.6698 0.7156 13 6 11.3379 2.1065 1.8415 14 6 11.5887 0.9268 2.7830 15 7 11.0047 0.5590 -0.0227 16 6 12.2555 0.6977 -0.5628 17 1 12.7616 1.6505 -0.5153 18 6 12.8727 -0.3866 -1.1712 19 7 12.2557 -1.5477 -1.2294 20 14 14.5792 -0.1977 -1.9074 21 1 15.6007 -0.5117 -0.8763 22 1 14.7298 -1.1300 -3.0534 23 1 14.7635 1.1988 -2.3778 24 6 10.1615 2.8450 -0.2355 25 6 9.2488 2.3944 -1.3803 26 7 5.5637 1.0273 0.5932 27 7 4.3405 0.7966 0.9228 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9968 2.6645 -1.7269 36 1 8.5575 -0.1409 -0.2860 37 1 7.1536 0.5185 0.5923 38 1 9.2358 0.3955 2.0072 39 1 8.6002 2.0503 1.8404 40 1 12.2846 2.4395 1.4161 41 1 10.8818 2.9251 2.3982 42 1 10.6352 0.5400 3.1426 43 1 12.1207 0.1409 2.2469 44 1 12.1887 1.2592 3.6300 45 1 10.5203 -0.2746 -0.1289 46 1 12.6872 -2.3056 -1.6543 47 1 9.6876 3.6627 0.3076 48 1 11.1151 3.1822 -0.6419 49 1 9.7587 1.6395 -1.9790 50 1 8.9970 3.2509 -2.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755071674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = 60.489746 kcal Electronic energy + Delta-G solvation = -30124.835763 eV Core-core repulsion = 26189.130907 eV Total energy + Delta-G solvation = -3935.704856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.30816 -41.09004 -39.32499 -36.97214 -36.19640 -34.41274 -33.64068 -32.63366 -31.57484 -31.46862 -30.65986 -28.03018 -26.66324 -25.65925 -24.49461 -24.24243 -23.63753 -22.62224 -22.16183 -20.93687 -19.71934 -18.91341 -18.51459 -17.51991 -17.21775 -16.93132 -16.54472 -16.22229 -15.94042 -15.73748 -15.56224 -15.42585 -15.17349 -14.81822 -14.61741 -14.40719 -14.23993 -14.11104 -13.63583 -13.47536 -13.10321 -13.01662 -12.99282 -12.86186 -12.82642 -12.58931 -12.43212 -12.34277 -12.19417 -12.08171 -11.88169 -11.74357 -11.67018 -11.45956 -11.41498 -11.25728 -11.12640 -10.73840 -10.56755 -10.34970 -9.55407 -8.81355 -7.81675 -5.05884 0.16446 0.58407 1.11844 1.49140 1.49906 1.56781 2.01630 2.21568 2.63352 3.11476 3.33705 3.52123 3.70301 3.85435 3.88796 3.96096 3.98434 4.08852 4.17559 4.21816 4.28459 4.32536 4.42727 4.50252 4.52995 4.58735 4.63986 4.70739 4.79608 4.80685 4.84625 4.86706 5.10255 5.13906 5.16040 5.17477 5.18670 5.27870 5.31040 5.34802 5.43342 5.44989 5.52267 5.58565 5.66238 5.74620 5.78451 6.40896 6.43865 6.85653 7.12456 7.48057 8.25557 8.49538 9.42077 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002725 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.816283 B =10273.665992 C =10403.100445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.345 5.345 5 C 0.113 3.887 6 C -0.121 4.121 7 C 0.597 3.403 8 O -0.576 6.576 9 N -0.585 5.585 10 C 0.083 3.917 11 C -0.116 4.116 12 C 0.193 3.807 13 C -0.117 4.117 14 C -0.134 4.134 15 N -0.715 5.715 16 C -0.202 4.202 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.953 3.047 21 H -0.294 1.294 22 H -0.304 1.304 23 H -0.273 1.273 24 C -0.127 4.127 25 C 0.129 3.871 26 N -0.222 5.222 27 N -0.084 5.084 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.238 0.762 36 H 0.043 0.957 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.371 0.629 46 H 0.244 0.756 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.504 8.494 4.841 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.130 5.130 5 C -0.045 4.045 6 C -0.260 4.260 7 C 0.384 3.616 8 O -0.456 6.456 9 N -0.315 5.315 10 C -0.041 4.041 11 C -0.154 4.154 12 C 0.103 3.897 13 C -0.156 4.156 14 C -0.191 4.191 15 N -0.355 5.355 16 C -0.334 4.334 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.785 3.215 21 H -0.222 1.222 22 H -0.232 1.232 23 H -0.198 1.198 24 C -0.168 4.168 25 C 0.007 3.993 26 N -0.094 5.094 27 N -0.064 5.064 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.255 0.745 36 H 0.061 0.939 37 H 0.161 0.839 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.204 0.796 46 H 0.053 0.947 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.406 8.110 5.602 27.251 hybrid contribution 1.427 -0.231 -1.550 2.119 sum -23.979 7.879 4.053 25.563 Atomic orbital electron populations 1.21674 0.92221 1.03021 1.03354 1.21794 0.98232 0.94472 1.02939 1.22676 0.69801 1.00461 1.07806 1.50835 1.10077 1.33337 1.18768 1.23800 0.88754 0.95883 0.96074 1.21380 0.94952 1.09686 0.99987 1.17139 0.82195 0.80401 0.81865 1.90731 1.86659 1.36886 1.31345 1.47930 1.05116 1.36710 1.41740 1.22665 1.04593 0.87938 0.88878 1.21984 0.94218 1.01924 0.97264 1.19856 0.91634 0.87813 0.90414 1.21799 0.99328 0.97792 0.96705 1.21577 1.01000 0.98430 0.98072 1.42573 1.16518 1.13350 1.63081 1.19357 0.93190 0.94832 1.26046 0.90972 1.25288 1.01220 0.95912 1.04368 1.69797 1.39045 1.01399 1.51939 0.85415 0.81872 0.76900 0.77304 1.22179 1.23174 1.19835 1.22246 0.98656 0.98671 0.97194 1.21380 0.83715 0.98096 0.96107 1.74125 1.12851 1.11200 1.11271 1.81910 0.93607 1.18036 1.12800 0.91291 0.90885 0.92045 0.92010 0.91860 0.86600 0.84085 0.74543 0.93884 0.83939 0.90377 0.90371 0.93770 0.91296 0.92493 0.94791 0.92928 0.79578 0.94699 0.91339 0.91885 0.92979 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.91 71.98 0.71 0.15 16 2 C -0.14 -1.09 6.14 30.60 0.19 -0.90 16 3 C 0.11 0.70 6.54 86.38 0.56 1.26 16 4 N -0.35 -5.59 3.69 -347.09 -1.28 -6.87 16 5 C 0.11 2.06 11.28 83.85 0.95 3.00 16 6 C -0.12 -3.32 6.74 40.82 0.27 -3.05 16 7 C 0.60 20.20 7.68 86.69 0.67 20.86 16 8 O -0.58 -21.39 16.32 -4.00 -0.07 -21.45 16 9 N -0.59 -20.90 2.97 -822.67 -2.44 -23.35 16 10 C 0.08 2.88 6.04 86.37 0.52 3.40 16 11 C -0.12 -3.84 4.68 30.67 0.14 -3.70 16 12 C 0.19 7.24 0.44 3.63 0.00 7.24 16 13 C -0.12 -4.10 4.73 30.59 0.14 -3.95 16 14 C -0.13 -4.69 9.47 71.98 0.68 -4.01 16 15 N -0.72 -33.71 3.48 -303.22 -1.05 -34.76 16 16 C -0.20 -10.63 8.57 84.03 0.72 -9.91 16 17 H 0.07 3.72 6.73 -2.91 -0.02 3.70 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -59.05 13.06 21.65 0.28 -58.76 16 20 Si 0.95 46.76 29.55 68.60 2.03 48.78 16 21 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.13 -4.59 4.78 30.67 0.15 -4.44 16 25 C 0.13 4.94 6.16 86.36 0.53 5.47 16 26 N -0.22 -6.34 8.73 -49.99 -0.44 -6.77 16 27 N -0.08 -2.05 13.65 37.02 0.51 -1.54 16 28 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.14 -0.06 8.08 -2.39 -0.02 -0.08 16 35 H 0.24 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.04 1.74 6.85 -2.38 -0.02 1.72 16 37 H 0.14 4.69 3.69 -87.69 -0.32 4.36 16 38 H 0.08 2.59 6.27 -2.39 -0.01 2.57 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.04 1.69 7.14 -2.39 -0.02 1.67 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.83 6.18 -2.39 -0.01 1.81 16 43 H 0.03 1.45 7.63 -2.39 -0.02 1.43 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.37 19.38 6.34 -92.71 -0.59 18.79 16 46 H 0.24 14.71 8.31 -92.70 -0.77 13.94 16 47 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 48 H 0.06 2.39 7.49 -2.39 -0.02 2.37 16 49 H 0.05 2.33 7.74 -2.39 -0.02 2.31 16 50 H 0.08 2.93 7.05 -2.39 -0.02 2.91 16 Total: -1.00 -71.37 390.38 4.29 -67.08 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.05 Total: 30.07 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.71 Total: 7.58 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -4.43 Total: -132.06 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -71.37 4.29 -67.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755071674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.566 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds