Wall clock time and date at job start Wed Apr 1 2020 01:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50707 * 109.47207 * 240.00488 * 2 1 3 5 5 N 1.31070 * 126.65878 * 284.95849 * 4 2 1 6 6 N 1.28839 * 107.99256 * 180.02562 * 5 4 2 7 7 N 1.28735 * 109.39252 * 359.73899 * 6 5 4 8 8 N 1.29014 * 108.81525 * 0.43278 * 7 6 5 9 9 C 1.46504 * 126.44432 * 179.83679 * 8 7 6 10 10 C 1.53006 * 109.46953 * 59.69060 * 9 8 7 11 11 C 1.52997 * 109.47048 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46897 * 59.99884 * 11 10 9 13 13 C 1.52998 * 109.47131 * 299.99931 * 12 11 10 14 14 C 1.52994 * 109.46800 * 299.69303 * 9 8 7 15 15 N 1.46897 * 109.47156 * 120.00536 * 2 1 3 16 16 C 1.47848 * 110.99839 * 301.72704 * 15 2 1 17 17 C 1.54906 * 104.79580 * 213.63521 * 16 15 2 18 18 C 1.55138 * 101.65277 * 37.07653 * 17 16 15 19 19 O 1.42903 * 110.85781 * 82.79373 * 18 17 16 20 20 C 1.50695 * 110.70460 * 205.96055 * 18 17 16 21 21 H 1.08001 * 120.00010 * 113.59566 * 20 18 17 22 22 C 1.37873 * 120.00228 * 293.59854 * 20 18 17 23 23 N 1.31516 * 119.99936 * 0.02562 * 22 20 18 24 24 Si 1.86807 * 120.00285 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46972 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47118 * 119.99938 * 24 22 20 27 27 H 1.48494 * 109.47049 * 240.00070 * 24 22 20 28 28 C 1.47447 * 110.99809 * 180.89193 * 15 2 1 29 29 H 1.09000 * 109.47266 * 305.64072 * 1 2 3 30 30 H 1.09007 * 109.47179 * 65.63359 * 1 2 3 31 31 H 1.08995 * 109.47321 * 185.63671 * 1 2 3 32 32 H 1.08992 * 109.47050 * 179.69034 * 9 8 7 33 33 H 1.08997 * 109.46883 * 59.99950 * 10 9 8 34 34 H 1.08999 * 109.46874 * 300.00430 * 10 9 8 35 35 H 1.09001 * 109.46889 * 299.99858 * 11 10 9 36 36 H 1.08999 * 109.47267 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47372 * 60.00269 * 12 11 10 38 38 H 1.09005 * 109.46646 * 180.02562 * 12 11 10 39 39 H 1.09006 * 109.46925 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.46983 * 299.99952 * 13 12 11 41 41 H 1.09007 * 109.47236 * 299.99718 * 14 9 8 42 42 H 1.09001 * 109.47479 * 59.99918 * 14 9 8 43 43 H 1.08993 * 110.37574 * 332.46942 * 16 15 2 44 44 H 1.09002 * 110.36905 * 94.81177 * 16 15 2 45 45 H 1.08993 * 110.99610 * 278.98010 * 17 16 15 46 46 H 1.09007 * 110.98800 * 155.16456 * 17 16 15 47 47 H 0.96698 * 113.99276 * 66.31743 * 19 18 17 48 48 H 0.97001 * 120.00222 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.88508 * 242.66056 * 28 15 2 50 50 H 1.08992 * 109.89282 * 3.68473 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 7 2.0373 -2.0042 -1.4401 6 7 2.5451 -2.2168 -2.6050 7 7 2.8590 -1.0917 -3.1462 8 7 2.5636 -0.1393 -2.3276 9 6 2.7630 1.2946 -2.5523 10 6 1.9761 1.7312 -3.7897 11 6 2.1848 3.2285 -4.0247 12 6 3.6733 3.5080 -4.2420 13 6 4.4601 3.0714 -3.0046 14 6 4.2513 1.5746 -2.7693 15 7 2.0196 -0.6926 1.1993 16 6 1.5119 -0.0467 2.4285 17 6 2.6509 -0.2173 3.4645 18 6 3.9108 -0.0380 2.5773 19 8 4.2070 1.3471 2.3880 20 6 5.0918 -0.7563 3.1776 21 1 5.5215 -1.6071 2.6697 22 6 5.6236 -0.3275 4.3751 23 7 5.1000 0.7082 4.9938 24 14 7.0871 -1.2183 5.1197 25 1 7.4849 -2.3424 4.2345 26 1 8.2236 -0.2727 5.2592 27 1 6.7165 -1.7476 6.4567 28 6 3.4934 -0.6937 1.2441 29 1 -0.3634 0.5988 0.8352 30 1 -0.3634 0.4240 -0.9362 31 1 -0.3634 -1.0226 0.1009 32 1 2.4115 1.8508 -1.6833 33 1 0.9157 1.5316 -3.6350 34 1 2.3275 1.1748 -4.6586 35 1 1.8336 3.7851 -3.1558 36 1 1.6246 3.5394 -4.9065 37 1 4.0245 2.9514 -5.1109 38 1 3.8220 4.5748 -4.4090 39 1 5.5205 3.2710 -3.1592 40 1 4.1089 3.6280 -2.1357 41 1 4.8119 1.2636 -1.8877 42 1 4.6028 1.0183 -3.6383 43 1 1.3174 1.0106 2.2491 44 1 0.6069 -0.5467 2.7738 45 1 2.6264 -1.2109 3.9117 46 1 2.6002 0.5557 4.2314 47 1 4.4748 1.8059 3.1961 48 1 5.4744 1.0102 5.8362 49 1 3.8649 -1.7177 1.2022 50 1 3.8903 -0.1209 0.4061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592155226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:08 Heat of formation + Delta-G solvation = 54.804882 kcal Electronic energy + Delta-G solvation = -31272.844275 eV Core-core repulsion = 27336.892905 eV Total energy + Delta-G solvation = -3935.951370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.97856 -39.04810 -38.79237 -35.62712 -34.84191 -32.92765 -32.13793 -31.22012 -30.94053 -30.01226 -28.62313 -27.81274 -24.65751 -24.48298 -24.40403 -23.06602 -22.30780 -21.18354 -19.99057 -19.93044 -19.49030 -17.67854 -17.19050 -16.81126 -15.81054 -15.62663 -15.12229 -14.95101 -14.61762 -14.59984 -14.52854 -14.00294 -13.71503 -13.33266 -13.16711 -12.94368 -12.65063 -12.60143 -12.42823 -12.23339 -12.02408 -11.81685 -11.61244 -11.55398 -11.48363 -11.32038 -11.24476 -11.11035 -11.03874 -10.98992 -10.78407 -10.73928 -10.67764 -10.48788 -10.44862 -10.27622 -10.00601 -9.72551 -9.37257 -8.68125 -8.18836 -7.82609 -6.27406 -4.33688 1.43833 2.03934 2.54512 3.19094 3.28114 3.33831 3.98272 4.04042 4.20166 4.22820 4.30092 4.45345 4.59614 4.73745 4.78600 4.86982 4.99106 4.99673 5.08717 5.10383 5.17855 5.25673 5.38088 5.49570 5.56880 5.60773 5.65863 5.67123 5.73395 5.75004 5.78690 5.84137 5.89108 5.93742 5.97647 6.00658 6.08746 6.14695 6.18615 6.27395 6.36593 6.43384 6.87734 6.95834 7.30887 7.40239 7.50305 7.55105 7.76718 8.06873 8.68174 8.90286 9.33293 9.42685 10.80056 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003823 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.899305 B = 7322.081147 C = 7996.813916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.161 3.839 3 H 0.062 0.938 4 C 0.201 3.799 5 N -0.276 5.276 6 N -0.087 5.087 7 N -0.102 5.102 8 N -0.304 5.304 9 C 0.145 3.855 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.129 4.129 15 N -0.509 5.509 16 C 0.044 3.956 17 C -0.130 4.130 18 C 0.239 3.761 19 O -0.594 6.594 20 C -0.531 4.531 21 H 0.062 0.938 22 C 0.071 3.929 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.063 3.937 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.385 0.615 48 H 0.267 0.733 49 H 0.082 0.918 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 8.726 -13.726 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 H 0.079 0.921 4 C -0.077 4.077 5 N -0.125 5.125 6 N -0.080 5.080 7 N -0.087 5.087 8 N -0.106 5.106 9 C 0.043 3.957 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.167 4.167 15 N -0.234 5.234 16 C -0.083 4.083 17 C -0.169 4.169 18 C 0.198 3.802 19 O -0.405 6.405 20 C -0.569 4.569 21 H 0.081 0.919 22 C -0.130 4.130 23 N -0.541 5.541 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.064 4.064 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.237 0.763 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.751 6.968 -14.998 18.264 hybrid contribution 1.218 1.303 1.561 2.370 sum -6.533 8.271 -13.437 17.078 Atomic orbital electron populations 1.21857 0.92049 1.04133 1.01833 1.20202 0.96112 0.93605 0.85212 0.92067 1.26002 0.98804 0.90372 0.92543 1.75072 1.17040 1.11431 1.08943 1.78614 1.11942 1.15466 1.02015 1.78715 1.19268 0.92355 1.18374 1.48721 1.40248 1.09777 1.11822 1.21947 0.99060 0.73294 1.01379 1.21901 0.99953 0.97698 0.96889 1.21509 0.97072 0.94189 1.02524 1.21618 0.94716 1.01507 0.98319 1.21493 1.01162 0.94080 0.98590 1.21900 0.92665 0.98148 1.04020 1.63750 1.09687 1.50160 0.99846 1.23105 0.99146 0.96006 0.90042 1.23178 0.94429 1.02067 0.97253 1.19686 0.91798 0.79973 0.88739 1.86037 1.90337 1.24087 1.40010 1.21635 1.14674 1.14700 1.05916 0.91941 1.24977 0.96953 0.94846 0.96248 1.69582 1.41387 1.25503 1.17582 0.86411 0.82079 0.79769 0.79043 1.19595 1.20869 1.20752 1.22845 0.84910 1.00598 0.98059 0.90830 0.92670 0.90373 0.86767 0.91072 0.89953 0.91254 0.90869 0.91541 0.91310 0.90668 0.91098 0.90383 0.90075 0.94187 0.91273 0.91460 0.90580 0.76302 0.92305 0.89963 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.92 37.16 0.33 -1.41 16 2 C 0.16 2.50 1.99 -68.86 -0.14 2.36 16 3 H 0.06 0.92 6.61 -51.93 -0.34 0.58 16 4 C 0.20 3.35 5.67 -155.43 -0.88 2.47 16 5 N -0.28 -5.30 12.36 32.70 0.40 -4.89 16 6 N -0.09 -1.65 13.43 60.35 0.81 -0.83 16 7 N -0.10 -1.70 13.04 60.35 0.79 -0.92 16 8 N -0.30 -4.47 3.06 -51.80 -0.16 -4.63 16 9 C 0.15 1.59 2.91 -67.93 -0.20 1.40 16 10 C -0.13 -1.09 5.42 -26.73 -0.14 -1.23 16 11 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 12 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 13 C -0.12 -0.96 5.92 -26.76 -0.16 -1.11 16 14 C -0.13 -1.39 5.42 -26.76 -0.15 -1.54 16 15 N -0.51 -9.50 5.02 -224.68 -1.13 -10.63 16 16 C 0.04 0.79 5.47 -2.30 -0.01 0.78 16 17 C -0.13 -2.86 5.67 -24.59 -0.14 -3.00 16 18 C 0.24 5.70 0.85 -89.95 -0.08 5.63 16 19 O -0.59 -14.55 13.09 -35.23 -0.46 -15.01 16 20 C -0.53 -14.09 8.21 -34.44 -0.28 -14.37 16 21 H 0.06 1.69 7.53 -52.49 -0.40 1.30 16 22 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 23 N -0.90 -23.31 10.69 55.43 0.59 -22.72 16 24 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.06 1.38 5.65 -2.83 -0.02 1.36 16 29 H 0.07 0.82 7.18 -51.93 -0.37 0.44 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.18 6.48 -51.93 -0.34 0.84 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.68 7.53 -51.93 -0.39 0.29 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 46 H 0.08 1.74 7.76 -51.93 -0.40 1.34 16 47 H 0.39 9.71 6.98 45.56 0.32 10.03 16 48 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 49 H 0.08 1.95 7.63 -51.93 -0.40 1.55 16 50 H 0.04 0.78 7.01 -51.93 -0.36 0.42 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -29.00 387.70 -8.34 -37.33 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.73 Total: 9.71 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.27 Total: -8.81 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 1.31 Total: -44.62 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.46 Total: -15.01 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.00 -8.34 -37.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.138 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds