Wall clock time and date at job start Wed Apr 1 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50707 * 109.47207 * 240.00488 * 2 1 3 5 5 N 1.31070 * 126.65878 * 284.95849 * 4 2 1 6 6 N 1.28839 * 107.99256 * 180.02562 * 5 4 2 7 7 N 1.28735 * 109.39252 * 359.73899 * 6 5 4 8 8 N 1.29014 * 108.81525 * 0.43278 * 7 6 5 9 9 C 1.46504 * 126.44432 * 179.83679 * 8 7 6 10 10 C 1.53006 * 109.46953 * 59.69060 * 9 8 7 11 11 C 1.52997 * 109.47048 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46897 * 59.99884 * 11 10 9 13 13 C 1.52998 * 109.47131 * 299.99931 * 12 11 10 14 14 C 1.52994 * 109.46800 * 299.69303 * 9 8 7 15 15 N 1.46897 * 109.47156 * 120.00536 * 2 1 3 16 16 C 1.47848 * 110.99839 * 301.72704 * 15 2 1 17 17 C 1.54906 * 104.79580 * 213.63521 * 16 15 2 18 18 C 1.55138 * 101.65277 * 37.07653 * 17 16 15 19 19 O 1.42903 * 110.85781 * 82.79373 * 18 17 16 20 20 C 1.50695 * 110.70460 * 205.96055 * 18 17 16 21 21 H 1.08001 * 120.00010 * 113.59566 * 20 18 17 22 22 C 1.37873 * 120.00228 * 293.59854 * 20 18 17 23 23 N 1.31516 * 119.99936 * 0.02562 * 22 20 18 24 24 Si 1.86807 * 120.00285 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46972 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47118 * 119.99938 * 24 22 20 27 27 H 1.48494 * 109.47049 * 240.00070 * 24 22 20 28 28 C 1.47447 * 110.99809 * 180.89193 * 15 2 1 29 29 H 1.09000 * 109.47266 * 305.64072 * 1 2 3 30 30 H 1.09007 * 109.47179 * 65.63359 * 1 2 3 31 31 H 1.08995 * 109.47321 * 185.63671 * 1 2 3 32 32 H 1.08992 * 109.47050 * 179.69034 * 9 8 7 33 33 H 1.08997 * 109.46883 * 59.99950 * 10 9 8 34 34 H 1.08999 * 109.46874 * 300.00430 * 10 9 8 35 35 H 1.09001 * 109.46889 * 299.99858 * 11 10 9 36 36 H 1.08999 * 109.47267 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47372 * 60.00269 * 12 11 10 38 38 H 1.09005 * 109.46646 * 180.02562 * 12 11 10 39 39 H 1.09006 * 109.46925 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.46983 * 299.99952 * 13 12 11 41 41 H 1.09007 * 109.47236 * 299.99718 * 14 9 8 42 42 H 1.09001 * 109.47479 * 59.99918 * 14 9 8 43 43 H 1.08993 * 110.37574 * 332.46942 * 16 15 2 44 44 H 1.09002 * 110.36905 * 94.81177 * 16 15 2 45 45 H 1.08993 * 110.99610 * 278.98010 * 17 16 15 46 46 H 1.09007 * 110.98800 * 155.16456 * 17 16 15 47 47 H 0.96698 * 113.99276 * 66.31743 * 19 18 17 48 48 H 0.97001 * 120.00222 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.88508 * 242.66056 * 28 15 2 50 50 H 1.08992 * 109.89282 * 3.68473 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 7 2.0373 -2.0042 -1.4401 6 7 2.5451 -2.2168 -2.6050 7 7 2.8590 -1.0917 -3.1462 8 7 2.5636 -0.1393 -2.3276 9 6 2.7630 1.2946 -2.5523 10 6 1.9761 1.7312 -3.7897 11 6 2.1848 3.2285 -4.0247 12 6 3.6733 3.5080 -4.2420 13 6 4.4601 3.0714 -3.0046 14 6 4.2513 1.5746 -2.7693 15 7 2.0196 -0.6926 1.1993 16 6 1.5119 -0.0467 2.4285 17 6 2.6509 -0.2173 3.4645 18 6 3.9108 -0.0380 2.5773 19 8 4.2070 1.3471 2.3880 20 6 5.0918 -0.7563 3.1776 21 1 5.5215 -1.6071 2.6697 22 6 5.6236 -0.3275 4.3751 23 7 5.1000 0.7082 4.9938 24 14 7.0871 -1.2183 5.1197 25 1 7.4849 -2.3424 4.2345 26 1 8.2236 -0.2727 5.2592 27 1 6.7165 -1.7476 6.4567 28 6 3.4934 -0.6937 1.2441 29 1 -0.3634 0.5988 0.8352 30 1 -0.3634 0.4240 -0.9362 31 1 -0.3634 -1.0226 0.1009 32 1 2.4115 1.8508 -1.6833 33 1 0.9157 1.5316 -3.6350 34 1 2.3275 1.1748 -4.6586 35 1 1.8336 3.7851 -3.1558 36 1 1.6246 3.5394 -4.9065 37 1 4.0245 2.9514 -5.1109 38 1 3.8220 4.5748 -4.4090 39 1 5.5205 3.2710 -3.1592 40 1 4.1089 3.6280 -2.1357 41 1 4.8119 1.2636 -1.8877 42 1 4.6028 1.0183 -3.6383 43 1 1.3174 1.0106 2.2491 44 1 0.6069 -0.5467 2.7738 45 1 2.6264 -1.2109 3.9117 46 1 2.6002 0.5557 4.2314 47 1 4.4748 1.8059 3.1961 48 1 5.4744 1.0102 5.8362 49 1 3.8649 -1.7177 1.2022 50 1 3.8903 -0.1209 0.4061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592155226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:06 Heat of formation + Delta-G solvation = 34.782043 kcal Electronic energy + Delta-G solvation = -31273.712531 eV Core-core repulsion = 27336.892905 eV Total energy + Delta-G solvation = -3936.819626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -45.28230 -40.43918 -39.82075 -37.28165 -35.94738 -34.45944 -34.14758 -32.22980 -31.91609 -30.98848 -30.20473 -29.50083 -26.35810 -25.75470 -25.68023 -23.76169 -23.44694 -22.43434 -21.55058 -21.13743 -20.72465 -19.19232 -18.73748 -18.10379 -17.12780 -16.97635 -16.83642 -16.23220 -16.13902 -15.72996 -15.34261 -15.29023 -14.85856 -14.62312 -14.26697 -14.02786 -13.95492 -13.88910 -13.73374 -13.48213 -13.35574 -13.29506 -13.13481 -12.81221 -12.68379 -12.62935 -12.55907 -12.43573 -12.32074 -12.24125 -12.19230 -12.11342 -12.11001 -11.85695 -11.56406 -11.45069 -11.26524 -11.21857 -10.94122 -10.66923 -10.11428 -9.34169 -8.26914 -6.40289 0.16300 0.92251 1.16590 1.35075 1.39455 1.49568 2.35271 2.75036 2.84615 2.98147 3.14655 3.42844 3.54448 3.68238 3.77649 3.90845 3.94725 3.98520 4.08389 4.20299 4.26127 4.30378 4.31482 4.33711 4.39964 4.41243 4.47911 4.49713 4.61257 4.68882 4.78436 4.83686 4.87918 4.90762 4.94244 5.05188 5.09652 5.11989 5.17926 5.21691 5.27101 5.27893 5.31178 5.44952 5.46350 5.55919 5.76302 5.86092 6.05308 6.13976 6.61962 7.30500 7.41630 7.55731 8.78605 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.003823 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.899305 B = 7322.081147 C = 7996.813916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.073 0.927 4 C 0.197 3.803 5 N -0.306 5.306 6 N -0.115 5.115 7 N -0.100 5.100 8 N -0.292 5.292 9 C 0.135 3.865 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.126 4.126 15 N -0.515 5.515 16 C 0.056 3.944 17 C -0.125 4.125 18 C 0.228 3.772 19 O -0.594 6.594 20 C -0.562 4.562 21 H 0.042 0.958 22 C 0.039 3.961 23 N -0.908 5.908 24 Si 0.953 3.047 25 H -0.280 1.280 26 H -0.276 1.276 27 H -0.274 1.274 28 C 0.079 3.921 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.380 0.620 48 H 0.272 0.728 49 H 0.053 0.947 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 10.851 -14.253 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.081 4.081 5 N -0.156 5.156 6 N -0.108 5.108 7 N -0.085 5.085 8 N -0.094 5.094 9 C 0.035 3.965 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.158 4.158 13 C -0.149 4.149 14 C -0.165 4.165 15 N -0.240 5.240 16 C -0.071 4.071 17 C -0.163 4.163 18 C 0.188 3.812 19 O -0.404 6.404 20 C -0.601 4.601 21 H 0.061 0.939 22 C -0.162 4.162 23 N -0.548 5.548 24 Si 0.779 3.221 25 H -0.205 1.205 26 H -0.201 1.201 27 H -0.199 1.199 28 C -0.049 4.049 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.231 0.769 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.204 9.113 -15.532 20.224 hybrid contribution 1.730 0.684 1.708 2.525 sum -7.474 9.797 -13.824 18.519 Atomic orbital electron populations 1.21869 0.89088 1.04174 1.04077 1.20421 0.98259 0.93350 0.83125 0.90921 1.26185 0.98754 0.89954 0.93250 1.74980 1.18112 1.13123 1.09340 1.78578 1.13299 1.16513 1.02459 1.78624 1.18828 0.92407 1.18679 1.49031 1.38722 1.10775 1.10904 1.22422 0.99585 0.71249 1.03280 1.21907 0.99673 0.99203 0.94947 1.21528 0.97056 0.92326 1.03822 1.21615 0.94585 1.02498 0.97134 1.21501 1.01833 0.91847 0.99748 1.21875 0.92235 1.00134 1.02208 1.63688 1.07290 1.51544 1.01510 1.23071 0.98301 0.97432 0.88277 1.22970 0.95260 1.00511 0.97601 1.19800 0.91910 0.79423 0.90097 1.86021 1.90407 1.24292 1.39696 1.21847 1.16397 1.14990 1.06832 0.93925 1.25534 0.98868 0.95491 0.96338 1.69626 1.41824 1.25647 1.17679 0.85596 0.79647 0.78633 0.78268 1.20465 1.20111 1.19943 1.22483 0.87279 0.98410 0.96703 0.88808 0.90239 0.91412 0.85626 0.90416 0.90834 0.90208 0.89065 0.91635 0.89574 0.90441 0.90814 0.93483 0.90768 0.92397 0.88603 0.93277 0.91721 0.76879 0.91868 0.92831 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.92 71.98 0.64 -2.26 16 2 C 0.16 4.70 1.99 44.17 0.09 4.79 16 3 H 0.07 2.00 6.61 -2.39 -0.02 1.98 16 4 C 0.20 6.47 5.67 138.14 0.78 7.26 16 5 N -0.31 -11.91 12.36 -50.45 -0.62 -12.54 16 6 N -0.12 -4.46 13.43 37.01 0.50 -3.96 16 7 N -0.10 -3.36 13.04 37.02 0.48 -2.87 16 8 N -0.29 -8.48 3.06 -317.81 -0.97 -9.45 16 9 C 0.13 2.79 2.91 44.99 0.13 2.92 16 10 C -0.12 -1.78 5.42 30.60 0.17 -1.61 16 11 C -0.11 -1.06 5.92 30.59 0.18 -0.88 16 12 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 13 C -0.11 -1.68 5.92 30.58 0.18 -1.50 16 14 C -0.13 -2.70 5.42 30.58 0.17 -2.53 16 15 N -0.51 -18.83 5.02 -864.74 -4.34 -23.17 16 16 C 0.06 1.90 5.47 86.77 0.47 2.37 16 17 C -0.12 -5.45 5.67 31.98 0.18 -5.27 16 18 C 0.23 11.09 0.85 -10.36 -0.01 11.08 16 19 O -0.59 -29.23 13.09 -148.98 -1.95 -31.18 16 20 C -0.56 -30.72 8.21 25.60 0.21 -30.51 16 21 H 0.04 2.43 7.53 -2.91 -0.02 2.40 16 22 C 0.04 2.02 5.28 84.65 0.45 2.46 16 23 N -0.91 -46.97 10.69 21.45 0.23 -46.74 16 24 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.08 3.55 5.65 86.65 0.49 4.04 16 29 H 0.09 1.68 7.18 -2.39 -0.02 1.66 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.13 2.33 6.48 -2.39 -0.02 2.31 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.79 7.53 -2.39 -0.02 1.77 16 44 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 46 H 0.06 2.95 7.76 -2.38 -0.02 2.93 16 47 H 0.38 19.28 6.98 -74.06 -0.52 18.76 16 48 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 49 H 0.05 2.67 7.63 -2.38 -0.02 2.65 16 50 H 0.03 1.23 7.01 -2.39 -0.02 1.21 16 Total: -1.00 -64.33 387.70 0.08 -64.25 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.42 Total: 31.88 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.31 Total: -10.76 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -4.73 Total: -98.73 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.95 Total: -31.18 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -64.33 0.08 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.033 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds