Wall clock time and date at job start Wed Apr 1 2020 01:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 C 1.50702 * 109.47456 * 174.99766 * 4 2 1 6 6 C 1.39870 * 126.03886 * 90.01950 * 5 4 2 7 7 N 1.30833 * 108.20014 * 179.97438 * 6 5 4 8 8 N 1.40082 * 108.20907 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.03849 * 180.02562 * 8 7 6 10 10 C 1.34951 * 107.92290 * 359.75290 * 8 7 6 11 11 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 12 12 C 1.34776 * 120.00057 * 275.00462 * 11 2 1 13 13 O 1.21582 * 119.99827 * 4.96546 * 12 11 2 14 14 N 1.34775 * 119.99758 * 184.96949 * 12 11 2 15 15 C 1.47077 * 120.88103 * 354.79648 * 14 12 11 16 16 C 1.53249 * 108.51989 * 231.16372 * 15 14 12 17 17 N 1.46893 * 109.33976 * 306.16979 * 16 15 14 18 18 C 1.46903 * 111.00108 * 187.25247 * 17 16 15 19 19 C 1.50703 * 109.47110 * 170.00111 * 18 17 16 20 20 H 1.07997 * 120.00154 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99658 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00503 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99863 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47040 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47316 * 119.99719 * 23 21 19 26 26 H 1.48498 * 109.47232 * 239.99700 * 23 21 19 27 27 C 1.46902 * 111.26878 * 63.10691 * 17 16 15 28 28 C 1.47084 * 120.87908 * 174.77500 * 14 12 11 29 29 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 30 30 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 31 31 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47403 * 294.99998 * 4 2 1 33 33 H 1.09002 * 109.46990 * 54.99883 * 4 2 1 34 34 H 1.08002 * 125.89622 * 359.96451 * 6 5 4 35 35 H 1.08998 * 109.47142 * 89.97637 * 9 8 7 36 36 H 1.09005 * 109.47106 * 209.97465 * 9 8 7 37 37 H 1.09003 * 109.47408 * 329.97141 * 9 8 7 38 38 H 1.07997 * 126.12428 * 180.23778 * 10 8 7 39 39 H 0.96994 * 119.99690 * 95.00210 * 11 2 1 40 40 H 1.09000 * 109.62802 * 111.45907 * 15 14 12 41 41 H 1.08996 * 109.63298 * 350.87354 * 15 14 12 42 42 H 1.08994 * 109.49086 * 186.21180 * 16 15 14 43 43 H 1.08996 * 109.49248 * 66.13016 * 16 15 14 44 44 H 1.08994 * 109.46754 * 290.00350 * 18 17 16 45 45 H 1.08997 * 109.46511 * 49.99967 * 18 17 16 46 46 H 0.96996 * 120.00824 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.49214 * 56.85202 * 27 17 16 48 48 H 1.08997 * 109.49554 * 176.93816 * 27 17 16 49 49 H 1.08989 * 109.62665 * 9.12872 * 28 14 12 50 50 H 1.08993 * 109.62864 * 248.54159 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 6 4.4550 -1.5163 -0.7559 7 7 5.6633 -1.0887 -1.0185 8 7 5.5572 0.1005 -1.7513 9 6 6.6731 0.9087 -2.2491 10 6 4.2454 0.3669 -1.9229 11 7 2.0184 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.7735 1.1362 2.4357 14 7 2.6899 -0.6254 3.4310 15 6 3.0438 -2.0525 3.3925 16 6 2.4224 -2.7412 4.6124 17 7 2.8316 -2.0323 5.8321 18 6 2.3996 -2.7591 7.0335 19 6 3.0402 -2.1434 8.2507 20 1 3.7018 -1.2967 8.1427 21 6 2.7817 -2.6612 9.5020 22 7 1.9757 -3.6920 9.6336 23 14 3.5753 -1.8976 11.0109 24 1 4.4325 -0.7582 10.5962 25 1 2.5182 -1.4121 11.9340 26 1 4.4064 -2.9159 11.7020 27 6 2.3269 -0.6528 5.8416 28 6 2.9445 0.1215 4.6722 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 4.2057 -2.4107 -0.2044 35 1 6.9503 0.5697 -3.2472 36 1 6.3730 1.9558 -2.2912 37 1 7.5263 0.8020 -1.5791 38 1 3.8313 1.2132 -2.4507 39 1 2.2491 -1.6316 1.1526 40 1 4.1279 -2.1618 3.4231 41 1 2.6532 -2.5022 2.4797 42 1 2.7648 -3.7748 4.6601 43 1 1.3359 -2.7210 4.5272 44 1 1.3151 -2.6990 7.1240 45 1 2.7002 -3.8038 6.9537 46 1 1.7935 -4.0561 10.5140 47 1 1.2418 -0.6618 5.7392 48 1 2.6002 -0.1719 6.7808 49 1 2.4882 1.1090 4.6053 50 1 4.0189 0.2211 4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601609320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:02 Heat of formation + Delta-G solvation = 63.916998 kcal Electronic energy + Delta-G solvation = -29522.136754 eV Core-core repulsion = 25586.580515 eV Total energy + Delta-G solvation = -3935.556239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.46258 -40.15187 -37.81565 -36.20388 -34.33772 -33.54253 -32.47728 -31.91129 -30.69726 -30.01628 -27.99754 -27.93629 -25.58759 -25.38529 -23.29443 -22.34483 -21.64158 -21.38544 -20.57016 -20.27508 -19.23728 -17.80979 -17.05564 -16.47633 -16.20485 -15.69339 -15.26927 -15.00199 -14.77211 -14.62009 -14.38207 -14.20942 -14.02377 -13.73999 -13.48749 -13.42761 -13.34722 -13.08490 -12.93861 -12.66372 -12.46051 -12.19946 -12.11363 -11.90933 -11.73142 -11.27375 -11.13054 -11.07353 -10.81287 -10.73367 -10.69243 -10.55293 -10.46508 -9.89856 -9.78793 -9.65631 -9.23253 -9.05565 -8.57065 -8.46099 -8.23396 -7.27915 -6.04119 -4.05573 1.65643 2.28106 2.57057 2.84667 3.31159 3.38714 3.43251 3.43782 4.01903 4.22734 4.41479 4.54418 4.73705 4.77838 4.80032 4.84301 4.87733 5.05071 5.08882 5.27291 5.28448 5.31371 5.40753 5.41625 5.50108 5.53519 5.60030 5.65250 5.72070 5.79353 5.87744 5.95311 6.05784 6.09611 6.18222 6.24932 6.41432 6.48391 6.61097 6.65500 6.74471 6.78707 7.17163 7.25879 7.31937 7.46962 7.77620 8.04279 8.11981 8.17874 8.51075 8.81419 9.02184 9.58997 11.06804 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002438 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.234239 B =11479.846285 C =12131.231801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.083 0.917 4 C -0.047 4.047 5 C -0.233 4.233 6 C 0.057 3.943 7 N -0.295 5.295 8 N -0.378 5.378 9 C 0.102 3.898 10 C 0.056 3.944 11 N -0.739 5.739 12 C 0.709 3.291 13 O -0.599 6.599 14 N -0.625 5.625 15 C 0.120 3.880 16 C 0.041 3.959 17 N -0.535 5.535 18 C 0.194 3.806 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.051 3.949 28 C 0.134 3.866 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.178 0.822 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.392 0.608 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.026 0.974 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.261 0.739 47 H 0.024 0.976 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 6.349 -27.588 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.101 0.899 4 C -0.087 4.087 5 C -0.244 4.244 6 C -0.129 4.129 7 N -0.116 5.116 8 N -0.160 5.160 9 C -0.039 4.039 10 C -0.090 4.090 11 N -0.397 5.397 12 C 0.411 3.589 13 O -0.478 6.478 14 N -0.362 5.362 15 C -0.003 4.003 16 C -0.089 4.089 17 N -0.260 5.260 18 C 0.069 3.931 19 C -0.546 4.546 20 H 0.083 0.917 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.078 4.078 28 C 0.011 3.989 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.195 0.805 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.188 0.812 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.069 6.995 -27.318 28.492 hybrid contribution -1.245 -0.164 0.836 1.509 sum 2.824 6.831 -26.482 27.494 Atomic orbital electron populations 1.22222 0.95609 1.02027 1.02521 1.20768 0.93176 0.97070 0.82858 0.89870 1.20218 0.89600 1.01466 0.97369 1.19969 0.96412 0.98796 1.09224 1.23717 0.89671 1.00000 0.99554 1.77384 1.22587 0.97529 1.14082 1.48433 1.05369 1.19526 1.42641 1.21840 0.88253 0.93803 1.00037 1.22297 0.84125 1.00658 1.01952 1.45279 1.72133 1.13459 1.08819 1.15817 0.78307 0.84518 0.80254 1.90864 1.56319 1.16859 1.83780 1.47371 1.65256 1.10581 1.13034 1.21726 1.00569 0.80328 0.97715 1.22377 0.97160 0.98221 0.91116 1.62071 1.59766 1.01730 1.02435 1.19724 0.93920 0.93898 0.85577 1.21185 1.27555 1.15475 0.90369 0.91729 1.24991 0.95349 0.95118 0.99170 1.69962 1.36400 1.23907 1.23543 0.86443 0.79108 0.79235 0.82655 1.19599 1.21125 1.21031 1.22357 0.96264 0.90875 0.98302 1.21702 1.00536 0.95318 0.81393 0.91755 0.91963 0.92601 0.90608 0.89845 0.80487 0.90861 0.89548 0.89268 0.81173 0.77206 0.90806 0.91370 0.90192 0.95592 0.99148 0.95094 0.92965 0.95772 0.88606 0.89426 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.17 1.60 2.53 -67.93 -0.17 1.43 16 3 H 0.08 0.98 7.65 -51.93 -0.40 0.58 16 4 C -0.05 -0.32 5.24 -27.88 -0.15 -0.47 16 5 C -0.23 -2.03 5.09 -105.05 -0.53 -2.56 16 6 C 0.06 0.57 11.91 -17.37 -0.21 0.36 16 7 N -0.29 -3.49 12.57 30.62 0.39 -3.11 16 8 N -0.38 -3.55 4.01 -68.16 -0.27 -3.82 16 9 C 0.10 0.55 11.47 59.85 0.69 1.24 16 10 C 0.06 0.46 11.40 -17.22 -0.20 0.26 16 11 N -0.74 -8.47 4.66 -58.68 -0.27 -8.75 16 12 C 0.71 11.21 8.27 -86.92 -0.72 10.49 16 13 O -0.60 -11.51 15.47 5.29 0.08 -11.43 16 14 N -0.63 -9.89 3.01 -178.19 -0.54 -10.43 16 15 C 0.12 1.66 6.54 -3.60 -0.02 1.63 16 16 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 17 N -0.53 -11.29 4.62 -235.76 -1.09 -12.38 16 18 C 0.19 4.97 4.72 -4.97 -0.02 4.95 16 19 C -0.51 -14.07 8.41 -34.44 -0.29 -14.36 16 20 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 23 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 28 C 0.13 2.31 6.61 -3.60 -0.02 2.28 16 29 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.39 3.71 6.14 -40.82 -0.25 3.46 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.71 5.74 -51.93 -0.30 0.41 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 49 H 0.09 1.54 7.04 -51.94 -0.37 1.17 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -35.62 403.23 -9.68 -45.30 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.33 Total: 0.57 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.43 Total: 7.24 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -1.05 Total: -64.32 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.62 -9.68 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601609320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.222 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds