Wall clock time and date at job start Wed Apr 1 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 C 1.50702 * 109.47456 * 174.99766 * 4 2 1 6 6 C 1.39870 * 126.03886 * 90.01950 * 5 4 2 7 7 N 1.30833 * 108.20014 * 179.97438 * 6 5 4 8 8 N 1.40082 * 108.20907 * 0.02562 * 7 6 5 9 9 C 1.46499 * 126.03849 * 180.02562 * 8 7 6 10 10 C 1.34951 * 107.92290 * 359.75290 * 8 7 6 11 11 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 12 12 C 1.34776 * 120.00057 * 275.00462 * 11 2 1 13 13 O 1.21582 * 119.99827 * 4.96546 * 12 11 2 14 14 N 1.34775 * 119.99758 * 184.96949 * 12 11 2 15 15 C 1.47077 * 120.88103 * 354.79648 * 14 12 11 16 16 C 1.53249 * 108.51989 * 231.16372 * 15 14 12 17 17 N 1.46893 * 109.33976 * 306.16979 * 16 15 14 18 18 C 1.46903 * 111.00108 * 187.25247 * 17 16 15 19 19 C 1.50703 * 109.47110 * 170.00111 * 18 17 16 20 20 H 1.07997 * 120.00154 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99658 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00503 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99863 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47040 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47316 * 119.99719 * 23 21 19 26 26 H 1.48498 * 109.47232 * 239.99700 * 23 21 19 27 27 C 1.46902 * 111.26878 * 63.10691 * 17 16 15 28 28 C 1.47084 * 120.87908 * 174.77500 * 14 12 11 29 29 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 30 30 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 31 31 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47403 * 294.99998 * 4 2 1 33 33 H 1.09002 * 109.46990 * 54.99883 * 4 2 1 34 34 H 1.08002 * 125.89622 * 359.96451 * 6 5 4 35 35 H 1.08998 * 109.47142 * 89.97637 * 9 8 7 36 36 H 1.09005 * 109.47106 * 209.97465 * 9 8 7 37 37 H 1.09003 * 109.47408 * 329.97141 * 9 8 7 38 38 H 1.07997 * 126.12428 * 180.23778 * 10 8 7 39 39 H 0.96994 * 119.99690 * 95.00210 * 11 2 1 40 40 H 1.09000 * 109.62802 * 111.45907 * 15 14 12 41 41 H 1.08996 * 109.63298 * 350.87354 * 15 14 12 42 42 H 1.08994 * 109.49086 * 186.21180 * 16 15 14 43 43 H 1.08996 * 109.49248 * 66.13016 * 16 15 14 44 44 H 1.08994 * 109.46754 * 290.00350 * 18 17 16 45 45 H 1.08997 * 109.46511 * 49.99967 * 18 17 16 46 46 H 0.96996 * 120.00824 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.49214 * 56.85202 * 27 17 16 48 48 H 1.08997 * 109.49554 * 176.93816 * 27 17 16 49 49 H 1.08989 * 109.62665 * 9.12872 * 28 14 12 50 50 H 1.08993 * 109.62864 * 248.54159 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 6 4.4550 -1.5163 -0.7559 7 7 5.6633 -1.0887 -1.0185 8 7 5.5572 0.1005 -1.7513 9 6 6.6731 0.9087 -2.2491 10 6 4.2454 0.3669 -1.9229 11 7 2.0184 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.7735 1.1362 2.4357 14 7 2.6899 -0.6254 3.4310 15 6 3.0438 -2.0525 3.3925 16 6 2.4224 -2.7412 4.6124 17 7 2.8316 -2.0323 5.8321 18 6 2.3996 -2.7591 7.0335 19 6 3.0402 -2.1434 8.2507 20 1 3.7018 -1.2967 8.1427 21 6 2.7817 -2.6612 9.5020 22 7 1.9757 -3.6920 9.6336 23 14 3.5753 -1.8976 11.0109 24 1 4.4325 -0.7582 10.5962 25 1 2.5182 -1.4121 11.9340 26 1 4.4064 -2.9159 11.7020 27 6 2.3269 -0.6528 5.8416 28 6 2.9445 0.1215 4.6722 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 4.2057 -2.4107 -0.2044 35 1 6.9503 0.5697 -3.2472 36 1 6.3730 1.9558 -2.2912 37 1 7.5263 0.8020 -1.5791 38 1 3.8313 1.2132 -2.4507 39 1 2.2491 -1.6316 1.1526 40 1 4.1279 -2.1618 3.4231 41 1 2.6532 -2.5022 2.4797 42 1 2.7648 -3.7748 4.6601 43 1 1.3359 -2.7210 4.5272 44 1 1.3151 -2.6990 7.1240 45 1 2.7002 -3.8038 6.9537 46 1 1.7935 -4.0561 10.5140 47 1 1.2418 -0.6618 5.7392 48 1 2.6002 -0.1719 6.7808 49 1 2.4882 1.1090 4.6053 50 1 4.0189 0.2211 4.8257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601609320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:58 Heat of formation + Delta-G solvation = 38.919015 kcal Electronic energy + Delta-G solvation = -29523.220748 eV Core-core repulsion = 25586.580515 eV Total energy + Delta-G solvation = -3936.640233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.10564 -41.37018 -39.22474 -37.20149 -35.94941 -34.45515 -34.13167 -32.93678 -31.90066 -30.96153 -29.70475 -28.50365 -27.17986 -26.14286 -24.71577 -23.98972 -22.82882 -22.11324 -21.68570 -21.02324 -20.48476 -19.04048 -18.49097 -17.64218 -17.43687 -16.75122 -16.47869 -16.27144 -16.05490 -15.89450 -15.48577 -15.36399 -15.32535 -15.00406 -14.86148 -14.39831 -14.12618 -14.02347 -13.95825 -13.62459 -13.50809 -13.29193 -13.10188 -13.02793 -12.76616 -12.74180 -12.59910 -12.42205 -12.34509 -12.30230 -12.15337 -11.83936 -11.73178 -11.38992 -11.32516 -11.08784 -10.62436 -10.32610 -10.14583 -9.54337 -9.19259 -9.02990 -8.20987 -6.30572 1.04470 1.41381 1.42123 1.55580 1.68740 1.77143 1.92992 2.19624 2.40484 2.96599 3.11392 3.23572 3.72311 3.96263 4.02964 4.07021 4.09650 4.18250 4.25015 4.26089 4.32409 4.43718 4.44239 4.46689 4.56814 4.65063 4.69282 4.71793 4.75383 4.85060 4.93913 4.95116 4.96465 5.02446 5.05393 5.16663 5.17461 5.23767 5.32261 5.44501 5.49200 5.64188 5.75549 5.80426 6.00332 6.04170 6.22618 6.27029 6.58886 6.82441 6.85150 7.03374 7.39159 7.62065 8.90366 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002438 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.234239 B =11479.846285 C =12131.231801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.061 0.939 4 C -0.034 4.034 5 C -0.245 4.245 6 C 0.045 3.955 7 N -0.343 5.343 8 N -0.386 5.386 9 C 0.094 3.906 10 C 0.054 3.946 11 N -0.723 5.723 12 C 0.705 3.295 13 O -0.637 6.637 14 N -0.630 5.630 15 C 0.130 3.870 16 C 0.038 3.962 17 N -0.539 5.539 18 C 0.209 3.791 19 C -0.522 4.522 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.934 5.934 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.278 1.278 27 C 0.059 3.941 28 C 0.146 3.854 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.192 0.808 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.201 0.799 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.018 0.982 44 H -0.042 1.042 45 H 0.011 0.989 46 H 0.264 0.736 47 H 0.008 0.992 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 6.712 -29.735 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.073 4.073 5 C -0.257 4.257 6 C -0.140 4.140 7 N -0.165 5.165 8 N -0.168 5.168 9 C -0.046 4.046 10 C -0.093 4.093 11 N -0.380 5.380 12 C 0.407 3.593 13 O -0.519 6.519 14 N -0.367 5.367 15 C 0.007 3.993 16 C -0.091 4.091 17 N -0.263 5.263 18 C 0.083 3.917 19 C -0.560 4.560 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.575 5.575 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.203 1.203 27 C -0.071 4.071 28 C 0.022 3.978 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.209 0.791 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.218 0.782 39 H 0.242 0.758 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.037 0.963 44 H -0.024 1.024 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.027 0.973 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.559 7.332 -29.522 30.758 hybrid contribution -1.416 -0.264 1.411 2.017 sum 3.143 7.067 -28.111 29.155 Atomic orbital electron populations 1.22169 0.95059 1.02637 1.01959 1.20915 0.93498 0.96267 0.83145 0.92093 1.20180 0.88376 1.02275 0.96446 1.20221 0.97227 0.98759 1.09458 1.24092 0.89647 1.00703 0.99550 1.77306 1.23942 0.99271 1.15960 1.48761 1.06644 1.19154 1.42291 1.22107 0.87368 0.94741 1.00415 1.22899 0.83786 1.01205 1.01364 1.45239 1.70907 1.13870 1.07976 1.16001 0.78016 0.84243 0.81058 1.90838 1.57848 1.18703 1.84485 1.47384 1.65425 1.11279 1.12642 1.21785 1.00921 0.78963 0.97650 1.22523 0.97063 0.98899 0.90608 1.61998 1.59763 1.02145 1.02439 1.19372 0.91636 0.93258 0.87432 1.21489 1.27569 1.15517 0.91452 0.91771 1.25893 0.95802 0.95511 1.02421 1.70081 1.37672 1.25242 1.24483 0.85350 0.78243 0.78572 0.78555 1.18695 1.20625 1.20342 1.22258 0.95416 0.90466 0.98910 1.21431 1.00420 0.94771 0.81176 0.95324 0.89524 0.91351 0.88962 0.87356 0.79135 0.89414 0.87203 0.90006 0.78192 0.75815 0.90059 0.87234 0.89218 0.96341 1.02425 0.97045 0.92697 0.97336 0.90336 0.89822 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.48 71.98 0.68 -1.89 16 2 C 0.17 2.82 2.53 44.99 0.11 2.94 16 3 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 4 C -0.03 -0.34 5.24 29.85 0.16 -0.19 16 5 C -0.25 -3.63 5.09 -20.14 -0.10 -3.74 16 6 C 0.05 0.83 11.91 85.24 1.02 1.85 16 7 N -0.34 -7.79 12.57 -57.02 -0.72 -8.50 16 8 N -0.39 -6.65 4.01 -369.56 -1.48 -8.13 16 9 C 0.09 0.88 11.47 127.77 1.47 2.34 16 10 C 0.05 0.75 11.40 83.54 0.95 1.70 16 11 N -0.72 -15.06 4.66 -457.82 -2.13 -17.19 16 12 C 0.71 21.59 8.27 179.06 1.48 23.07 16 13 O -0.64 -24.47 15.47 -3.97 -0.06 -24.53 16 14 N -0.63 -19.34 3.01 -835.94 -2.52 -21.85 16 15 C 0.13 3.32 6.54 86.35 0.56 3.88 16 16 C 0.04 1.28 5.62 86.39 0.49 1.77 16 17 N -0.54 -23.10 4.62 -899.82 -4.16 -27.26 16 18 C 0.21 11.12 4.72 85.56 0.40 11.52 16 19 C -0.52 -29.55 8.41 25.60 0.22 -29.33 16 20 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 21 C 0.00 0.10 5.46 84.65 0.46 0.56 16 22 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 23 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 27 C 0.06 2.39 5.46 86.39 0.47 2.86 16 28 C 0.15 5.05 6.61 86.35 0.57 5.62 16 29 H 0.03 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.19 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.40 6.38 6.14 -92.71 -0.57 5.81 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.11 1.89 5.74 -2.39 -0.01 1.88 16 42 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 45 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 46 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.08 3.43 6.67 -2.39 -0.02 3.42 16 49 H 0.08 2.98 7.04 -2.39 -0.02 2.97 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -80.09 403.23 0.54 -79.55 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.36 Total: 14.41 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 8.94 Total: 22.97 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -10.72 Total: -138.93 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -80.09 0.54 -79.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601609320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.467 kcal (2) G-P(sol) polarization free energy of solvation -80.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds